CsaV3_1G045400 (gene) Cucumber (Chinese Long) v3

Overview


Name	CsaV3_1G045400
Type	gene
Organism	Cucumis sativus L. var. sativus cv. Chinese Long (Cucumber (Chinese Long) v3)
Description	Pectin lyase-like superfamily protein
Location	chr1: 31188125 .. 31189675 (-)
RNA-Seq Expression	CsaV3_1G045400
Synteny	CsaV3_1G045400

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCCAACCCAACCAAAAGTCTAGTCTTCATCGTCTTCTTCCATTTGTTCATTCAAATCTCAACTGCTGCCAACTACAATGTGATATCATTTGGTGCAAAACCCGATGGAAAAACGGACTCGACCCAATCATTTCTTAAGGCGTGGACGTCTGCATGTAGCTCCTCCACACGATCCACCATCAACGTCCCTAAGGGAAGGTTCTTGCTCACACCCATCACGTTTAGAGGTCCATGTAAGAACAAAATTACATTTTTGTTGAACGGAACACTTGTTGCACCTCTTGACTATCGTGCCCTTGGAGATTCTGGGTATTGGATTTTGTTCATCAAAGTCGATGGAGTTTCTTTCGTCGGTGGCACTATTGATGGAAAAGGCACTGCCTATTGGGCTTGCAAGAACTCTGCAAAAAACTGTCCTCCAGGAGCTAGGGTATGTGTTTACTTCAAGTTCCACCCATCCTTTCGAGTCTATCTCAAAATTATATTTCAAATACATCCTAATTAAGTTGGCAACTAGAAAATGGGTGTTTTTTAAAAGAAAAATTATTGTGACTTGTTTAAAATATATATATGGTAACATGTTCTGTGTTCTTTCTATTTTAACAAATGAAATACAGTCAATAACGTTCAATTGGGCGAACAACATAATACTTAGTGGGTTAACATCAATCAATAGTCAACAAACTCATGTTGTGATCAATAGCTGCAACAATGTGGTGGTGAAGAATGTGAAGATAATGGCTCCAGACCAAAGCCCCAATACTGATGGTATTCATGTGCAATCCTCCACTAACGTAACCATCACTGGAAGTACCATTAAAACTGGAGATGATTGCATTTCTATTGGTGATGGAACAAAGAATTTGTTTATGAGTGATATCAAATGTGGGCCTGGCCATGGCGTAAGGTAACAAAACTACATTTACATATACTTCCTGAAATGGTGGTTTTCGTATGTATTTCGAGCTAGTAAACTAATATTATCTAACTTCAATTAATGGACAGCATCGGAAGCTTAGGAAAAGAGGCCAACGAAAACGGAGTTGAAAATGTAACATTGATAAATGCAGTGTTCACGAAATCCGATAATGGTGTTAGGATAAAGACATGGCCTACACCTAGCAATGGTTTCGTTAGACATGTTATCTTTCAAAATATCGTCATGATCAATGTTAAAAATCCTATCTTAATCGATCAAAATTATTGTCCCAACCACCAAAGTTGTTCTCTCCAGGTAATTAATTGACCAACTTTTCTTTTAGAGATACGTAGTTTTTTTTTTTTTCTTGCCATTCTAATATTTGTTTTTTAATTGTTTTTGTTATTAAAGAGTTCTGGAGTGAAGATTAATGATGTGACATACAAAAGTATTGAAGGAACATCCGCAACGTCAGAAGCTGTAACATTTGATTGTAGTTCTAGTAGTCCGTGCAGTGATATAAAATTGGAAGACATAAAGCTTACGTACAAAAACAAGACAACAATTTCATCATGCAAGAACATTGGTGGATCGAGTATCGGACTTGTGGTGCCCGAGACTTGCTTTTGA

mRNA sequence

ATGGCCAACCCAACCAAAAGTCTAGTCTTCATCGTCTTCTTCCATTTGTTCATTCAAATCTCAACTGCTGCCAACTACAATGTGATATCATTTGGTGCAAAACCCGATGGAAAAACGGACTCGACCCAATCATTTCTTAAGGCGTGGACGTCTGCATGTAGCTCCTCCACACGATCCACCATCAACGTCCCTAAGGGAAGGTTCTTGCTCACACCCATCACGTTTAGAGGTCCATGTAAGAACAAAATTACATTTTTGTTGAACGGAACACTTGTTGCACCTCTTGACTATCGTGCCCTTGGAGATTCTGGGTATTGGATTTTGTTCATCAAAGTCGATGGAGTTTCTTTCGTCGGTGGCACTATTGATGGAAAAGGCACTGCCTATTGGGCTTGCAAGAACTCTGCAAAAAACTGTCCTCCAGGAGCTAGGATTAATGATGTGACATACAAAAGTATTGAAGGAACATCCGCAACGTCAGAAGCTGTAACATTTGATTGTAGTTCTAGTAGTCCGTGCAGTGATATAAAATTGGAAGACATAAAGCTTACGTACAAAAACAAGACAACAATTTCATCATGCAAGAACATTGGTGGATCGAGTATCGGACTTGTGGTGCCCGAGACTTGCTTTTGA

Coding sequence (CDS)

ATGGCCAACCCAACCAAAAGTCTAGTCTTCATCGTCTTCTTCCATTTGTTCATTCAAATCTCAACTGCTGCCAACTACAATGTGATATCATTTGGTGCAAAACCCGATGGAAAAACGGACTCGACCCAATCATTTCTTAAGGCGTGGACGTCTGCATGTAGCTCCTCCACACGATCCACCATCAACGTCCCTAAGGGAAGGTTCTTGCTCACACCCATCACGTTTAGAGGTCCATGTAAGAACAAAATTACATTTTTGTTGAACGGAACACTTGTTGCACCTCTTGACTATCGTGCCCTTGGAGATTCTGGGTATTGGATTTTGTTCATCAAAGTCGATGGAGTTTCTTTCGTCGGTGGCACTATTGATGGAAAAGGCACTGCCTATTGGGCTTGCAAGAACTCTGCAAAAAACTGTCCTCCAGGAGCTAGGATTAATGATGTGACATACAAAAGTATTGAAGGAACATCCGCAACGTCAGAAGCTGTAACATTTGATTGTAGTTCTAGTAGTCCGTGCAGTGATATAAAATTGGAAGACATAAAGCTTACGTACAAAAACAAGACAACAATTTCATCATGCAAGAACATTGGTGGATCGAGTATCGGACTTGTGGTGCCCGAGACTTGCTTTTGA

Protein sequence

MANPTKSLVFIVFFHLFIQISTAANYNVISFGAKPDGKTDSTQSFLKAWTSACSSSTRSTINVPKGRFLLTPITFRGPCKNKITFLLNGTLVAPLDYRALGDSGYWILFIKVDGVSFVGGTIDGKGTAYWACKNSAKNCPPGARINDVTYKSIEGTSATSEAVTFDCSSSSPCSDIKLEDIKLTYKNKTTISSCKNIGGSSIGLVVPETCF*

Homology

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BLAST of CsaV3_1G045400 vs. NCBI nr
Match: KAE8653617.1 (hypothetical protein Csa_007133 [Cucumis sativus])

HSP 1 Score: 429.1 bits (1102), Expect = 2.2e-116
Identity = 211/211 (100.00%), Postives = 211/211 (100.00%), Query Frame = 0


Query: 1   MANPTKSLVFIVFFHLFIQISTAANYNVISFGAKPDGKTDSTQSFLKAWTSACSSSTRST 60
           MANPTKSLVFIVFFHLFIQISTAANYNVISFGAKPDGKTDSTQSFLKAWTSACSSSTRST
Sbjct: 1   MANPTKSLVFIVFFHLFIQISTAANYNVISFGAKPDGKTDSTQSFLKAWTSACSSSTRST 60

Query: 61  INVPKGRFLLTPITFRGPCKNKITFLLNGTLVAPLDYRALGDSGYWILFIKVDGVSFVGG 120
           INVPKGRFLLTPITFRGPCKNKITFLLNGTLVAPLDYRALGDSGYWILFIKVDGVSFVGG
Sbjct: 61  INVPKGRFLLTPITFRGPCKNKITFLLNGTLVAPLDYRALGDSGYWILFIKVDGVSFVGG 120

Query: 121 TIDGKGTAYWACKNSAKNCPPGARINDVTYKSIEGTSATSEAVTFDCSSSSPCSDIKLED 180
           TIDGKGTAYWACKNSAKNCPPGARINDVTYKSIEGTSATSEAVTFDCSSSSPCSDIKLED
Sbjct: 121 TIDGKGTAYWACKNSAKNCPPGARINDVTYKSIEGTSATSEAVTFDCSSSSPCSDIKLED 180

Query: 181 IKLTYKNKTTISSCKNIGGSSIGLVVPETCF 212
           IKLTYKNKTTISSCKNIGGSSIGLVVPETCF
Sbjct: 181 IKLTYKNKTTISSCKNIGGSSIGLVVPETCF 211

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BLAST of CsaV3_1G045400 vs. NCBI nr
Match: XP_031736043.1 (polygalacturonase-like [Cucumis sativus])

HSP 1 Score: 356.3 bits (913), Expect = 1.8e-94
Identity = 211/389 (54.24%), Postives = 211/389 (54.24%), Query Frame = 0


Query: 1   MANPTKSLVFIVFFHLFIQISTAANYNVISFGAKPDGKTDSTQSFLKAWTSACSSSTRST 60
           MANPTKSLVFIVFFHLFIQISTAANYNVISFGAKPDGKTDSTQSFLKAWTSACSSSTRST
Sbjct: 1   MANPTKSLVFIVFFHLFIQISTAANYNVISFGAKPDGKTDSTQSFLKAWTSACSSSTRST 60

Query: 61  INVPKGRFLLTPITFRGPCKNKITFLLNGTLVAPLDYRALGDSGYWILFIKVDGVSFVGG 120
           INVPKGRFLLTPITFRGPCKNKITFLLNGTLVAPLDYRALGDSGYWILFIKVDGVSFVGG
Sbjct: 61  INVPKGRFLLTPITFRGPCKNKITFLLNGTLVAPLDYRALGDSGYWILFIKVDGVSFVGG 120

Query: 121 TIDGKGTAYWACKNSAKNCPPGAR------------------------------------ 180
           TIDGKGTAYWACKNSAKNCPPGAR                                    
Sbjct: 121 TIDGKGTAYWACKNSAKNCPPGARSITFNWANNIILSGLTSINSQQTHVVINSCNNVVVK 180

Query: 181 ------------------------------------------------------------ 212
                                                                       
Sbjct: 181 NVKIMAPDQSPNTDGIHVQSSTNVTITGSTIKTGDDCISIGDGTKNLFMSDIKCGPGHGV 240

[Close]

BLAST of CsaV3_1G045400 vs. NCBI nr
Match: XP_004142576.2 (polygalacturonase [Cucumis sativus] >XP_031745382.1 polygalacturonase-like [Cucumis sativus] >KGN66774.1 hypothetical protein Csa_007167 [Cucumis sativus])

HSP 1 Score: 353.2 bits (905), Expect = 1.5e-93
Identity = 209/389 (53.73%), Postives = 210/389 (53.98%), Query Frame = 0


Query: 1   MANPTKSLVFIVFFHLFIQISTAANYNVISFGAKPDGKTDSTQSFLKAWTSACSSSTRST 60
           MANPTKSLVFIVFFHLFIQISTAANYNVISFGAKPDGKTDSTQSFLKAWTSACSSSTRST
Sbjct: 1   MANPTKSLVFIVFFHLFIQISTAANYNVISFGAKPDGKTDSTQSFLKAWTSACSSSTRST 60

Query: 61  INVPKGRFLLTPITFRGPCKNKITFLLNGTLVAPLDYRALGDSGYWILFIKVDGVSFVGG 120
           INVPKGRFLLTPITFRGPCKNKITFLLNGTLVAPLDYRALGDSGYWILFIKVDGVSFVGG
Sbjct: 61  INVPKGRFLLTPITFRGPCKNKITFLLNGTLVAPLDYRALGDSGYWILFIKVDGVSFVGG 120

Query: 121 TIDGKGTAYWACKNSAKNCPPGAR------------------------------------ 180
           TIDGKGTAYWACKNSAKNCPPGAR                                    
Sbjct: 121 TIDGKGTAYWACKNSAKNCPPGARSITFNWANNIILSGLTSINSQQTHVVINSCNNVVVK 180

Query: 181 ------------------------------------------------------------ 212
                                                                       
Sbjct: 181 NVKIMAPDQSPNTDGIHVQSSTNVTITGSTIKTGDDCISIGDGTKNLFMSDIKCGPGHGV 240

[Close]

BLAST of CsaV3_1G045400 vs. NCBI nr
Match: KAE8637259.1 (hypothetical protein CSA_017675, partial [Cucumis sativus])

HSP 1 Score: 297.7 bits (761), Expect = 7.7e-77
Identity = 144/144 (100.00%), Postives = 144/144 (100.00%), Query Frame = 0


Query: 1   MANPTKSLVFIVFFHLFIQISTAANYNVISFGAKPDGKTDSTQSFLKAWTSACSSSTRST 60
           MANPTKSLVFIVFFHLFIQISTAANYNVISFGAKPDGKTDSTQSFLKAWTSACSSSTRST
Sbjct: 1   MANPTKSLVFIVFFHLFIQISTAANYNVISFGAKPDGKTDSTQSFLKAWTSACSSSTRST 60

Query: 61  INVPKGRFLLTPITFRGPCKNKITFLLNGTLVAPLDYRALGDSGYWILFIKVDGVSFVGG 120
           INVPKGRFLLTPITFRGPCKNKITFLLNGTLVAPLDYRALGDSGYWILFIKVDGVSFVGG
Sbjct: 61  INVPKGRFLLTPITFRGPCKNKITFLLNGTLVAPLDYRALGDSGYWILFIKVDGVSFVGG 120

Query: 121 TIDGKGTAYWACKNSAKNCPPGAR 145
           TIDGKGTAYWACKNSAKNCPPGAR
Sbjct: 121 TIDGKGTAYWACKNSAKNCPPGAR 144

[Close]

BLAST of CsaV3_1G045400 vs. NCBI nr
Match: XP_008460791.1 (PREDICTED: polygalacturonase-like [Cucumis melo] >KAA0063115.1 polygalacturonase-like [Cucumis melo var. makuwa] >TYK00161.1 polygalacturonase-like [Cucumis melo var. makuwa])

HSP 1 Score: 288.9 bits (738), Expect = 3.6e-74
Identity = 176/390 (45.13%), Postives = 190/390 (48.72%), Query Frame = 0


Query: 1   MANPTKSLVFIVFFHLFIQISTAANYNVISFGAKPDGKTDSTQSFLKAWTSACSSSTRST 60
           MAN  KSLVFIVFFHLFIQIS+A +YNVI+FGAKPDGKTDSTQSFLKAW SACSS TRST
Sbjct: 1   MANSRKSLVFIVFFHLFIQISSAGSYNVITFGAKPDGKTDSTQSFLKAWKSACSSLTRST 60

Query: 61  INVPKGRFLLTPITFRGPCK-NKITFLLNGTLVAPLDYRALGDSGYWILFIKVDGVSFVG 120
           INVPKGRFLLT ITFRGPCK N I FLLNGTLVAPLDY ALGDSGYWILF KV+GVSF+G
Sbjct: 61  INVPKGRFLLTAITFRGPCKNNNIIFLLNGTLVAPLDYNALGDSGYWILFTKVNGVSFIG 120

Query: 121 GTIDGKGTAYWACKNSAKNCPPGAR----------------------------------- 180
           G IDGKGTAYWACK S K CPPGAR                                   
Sbjct: 121 GNIDGKGTAYWACKGSGKKCPPGARSITFNWASNIIISGLTSINSRQTHIVINSCNNVVV 180

Query: 181 ------------------------------------------------------------ 212
                                                                       
Sbjct: 181 KNVKIMAPDQSPNTDGIHVQSSTGVTISGTTIKTGDDCISIGDGTKNLFMSDIKCGPGHG 240

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BLAST of CsaV3_1G045400 vs. ExPASy Swiss-Prot
Match: P48979 (Polygalacturonase OS=Prunus persica OX=3760 PE=2 SV=1)

HSP 1 Score: 144.8 bits (364), Expect = 1.1e-33
Identity = 112/384 (29.17%), Postives = 138/384 (35.94%), Query Frame = 0


Query: 7   SLVFIVFFHLFIQISTAANYNVISFGAKPDGKTDSTQSFLKAWTSACSSSTRSTINVPKG 66
           SL  I  F +   I++   YNV S GAK DGKTDST++FL AW  AC+S     I VP G
Sbjct: 9   SLSLIFVFMINSAIASPLTYNVASLGAKADGKTDSTKAFLSAWAKACASMNPGVIYVPAG 68

Query: 67  RFLLTPITFRGPCKNK-ITFLLNGTLVAPLDYRALGDSGYWILFIKVDGVSFVGGTIDGK 126
            F L  + F GPCKN  ITF + GTLVAP DYR +G++  WI F  V+GV+  GG +DG+
Sbjct: 69  TFFLRDVVFSGPCKNNAITFRIAGTLVAPSDYRVIGNAANWIFFHHVNGVTISGGILDGQ 128

Query: 127 GTAYWACK---------------------------------------------------- 186
           GTA WACK                                                    
Sbjct: 129 GTALWACKACHGESCPSGATTLGFSDSNNIVVSGLASLNSQMFHIVINDFQNVQMQGVRV 188

Query: 187 -----------------------NSA---------------------------------- 211
                                  NS                                   
Sbjct: 189 SRSGNSPNTDGIHVQMSSGVTILNSKIATGDDCVSIGPGTSNLWIEGVACGPGHGISIGS 248

[Close]

BLAST of CsaV3_1G045400 vs. ExPASy Swiss-Prot
Match: O22818 (Probable polygalacturonase At2g43860 OS=Arabidopsis thaliana OX=3702 GN=At2g43860 PE=2 SV=1)

HSP 1 Score: 119.8 bits (299), Expect = 3.8e-26
Identity = 60/121 (49.59%), Postives = 81/121 (66.94%), Query Frame = 0


Query: 27  NVISFGAKPDGKTDSTQSFLKAWTSACSSSTRSTINVPKGRFLLTPITFRG-PCKN-KIT 86
           NV+S+GAKPDG  DST++FL AW  AC+S+  +TI VPKGRFL+  + F G  CK   I+
Sbjct: 34  NVLSYGAKPDGSKDSTKAFLAAWDVACASANPTTIIVPKGRFLVGNLVFHGNECKQAPIS 93

Query: 87  FLLNGTLVAPLDYRALGDSGYWILFIKVDGVSFVGGTIDGKGTAYWACKNS-AKNCPPGA 145
             + G++VAP D+R +  S +WI F  V  VS  GG +D +GT+ W CKN+   NCP GA
Sbjct: 94  IRIAGSIVAPEDFRIIASSKHWIWFEDVTDVSIYGGILDAQGTSLWKCKNNGGHNCPTGA 153

[Close]

BLAST of CsaV3_1G045400 vs. ExPASy Swiss-Prot
Match: P35339 (Exopolygalacturonase OS=Zea mays OX=4577 GN=PG2C PE=2 SV=1)

HSP 1 Score: 104.0 bits (258), Expect = 2.1e-21
Identity = 62/192 (32.29%), Postives = 101/192 (52.60%), Query Frame = 0


Query: 25  NYNVISFGAKPDGKTDSTQSFLKAWTSACSSSTRSTINVPKGRFLLTPITFRGPCKNKIT 84
           ++++   GA  +GKTDST++  +AW SAC  + + TI +PKG FL+ P+ F GPCK  +T
Sbjct: 40  SFDITKLGASGNGKTDSTKAVQEAWASACGGTGKQTILIPKGDFLVGPLNFTGPCKGDVT 99

Query: 85  FLLNGTLVAPLDYRALGDSGYWILFIKVDGVSFVG-GTIDGKGTAYWACKNS------AK 144
             +NG L+A  D     D G WI  ++VD +   G G +DG+G A W+ KNS       K
Sbjct: 100 IQVNGNLLATTDLSQYKDHGNWIEILRVDNLVITGKGKLDGQGPAVWS-KNSCVKKYDCK 159

Query: 145 NCPPGARINDVTYKSIEGTSATSEAVTFDCSSSSPCSDIKLEDIKLTYKNKTTISSCKNI 204
             P    ++ V    + G +  +    F   +   C D+ ++D+ +T    +  +   ++
Sbjct: 160 ILPNSLVMDFVNNGEVSGITLLNS--KFFHMNMYKCKDMLIKDVNVTAPGDSPNTDGIHM 219

Query: 205 GGSSIGLVVPET 210
           G SS G+ +  T
Sbjct: 220 GDSS-GVTITNT 227

[Close]

BLAST of CsaV3_1G045400 vs. ExPASy Swiss-Prot
Match: P26216 (Exopolygalacturonase OS=Zea mays OX=4577 GN=PG1 PE=1 SV=1)

HSP 1 Score: 99.4 bits (246), Expect = 5.3e-20
Identity = 60/192 (31.25%), Postives = 100/192 (52.08%), Query Frame = 0


Query: 25  NYNVISFGAKPDGKTDSTQSFLKAWTSACSSSTRSTINVPKGRFLLTPITFRGPCKNKIT 84
           ++++   GA  +GKTDST++  +AW SAC  + + TI +PKG FL+  + F GPCK  +T
Sbjct: 40  SFDITKLGASGNGKTDSTKAVQEAWASACGGTGKQTILIPKGDFLVGQLNFTGPCKGDVT 99

Query: 85  FLLNGTLVAPLDYRALGDSGYWILFIKVDGVSFVG-GTIDGKGTAYWACKNS------AK 144
             ++G L+A  D     D G WI  ++VD +   G G +DG+G A W+ KNS       K
Sbjct: 100 IQVDGNLLATTDLSQYKDHGNWIEILRVDNLVITGKGNLDGQGPAVWS-KNSCTKKYDCK 159

Query: 145 NCPPGARINDVTYKSIEGTSATSEAVTFDCSSSSPCSDIKLEDIKLTYKNKTTISSCKNI 204
             P    ++ V    + G +  +    F   +   C D+ ++D+ +T    +  +   ++
Sbjct: 160 ILPNSLVMDFVNNGEVSGVTLLNS--KFFHMNMYRCKDMLIKDVTVTAPGDSPNTDGIHM 219

Query: 205 GGSSIGLVVPET 210
           G SS G+ +  T
Sbjct: 220 GDSS-GITITNT 227

[Close]

BLAST of CsaV3_1G045400 vs. ExPASy Swiss-Prot
Match: P48978 (Polygalacturonase OS=Malus domestica OX=3750 PE=2 SV=1)

HSP 1 Score: 96.7 bits (239), Expect = 3.4e-19
Identity = 64/187 (34.22%), Postives = 99/187 (52.94%), Query Frame = 0


Query: 23  AANYNVISFGAKPDGKTDSTQSFLKAWTSACSSSTRSTINVPKGRFLLTPITFRGPCKNK 82
           A   +V  FGAK +G  D TQ+F+KAW +ACSSS    + VP+  +L+ PI F GPCK++
Sbjct: 96  AKTISVDDFGAKGNG-ADDTQAFVKAWKAACSSSGAMVLVVPQKNYLVRPIEFSGPCKSQ 155

Query: 83  ITFLLNGTLVAPLDYRALGDSGYWILFIKVDGVSFVG-GTIDGKGTAYWACKNSAKNCPP 142
           +T  + GT+ A  D     D  +W++F  V  +  VG GTI+G G  +W  KNS K  P 
Sbjct: 156 LTLQIYGTIEASEDRSIYKDIDHWLIFDNVQNLLVVGPGTINGNGNIWW--KNSCKIKP- 215

Query: 143 GARINDVTYKSIEGTSATSEAVTFDCSSSSPCSDIKLEDIKLTYKNKTTISSCKNIGGSS 202
                    +   GT A + AVTF+  ++    ++ ++D +  +       +C N+  S 
Sbjct: 216 ---------QPPCGTYAPT-AVTFNRCNNLVVKNLNIQDAQQIH---VIFQNCINVQASC 265

Query: 203 IGLVVPE 209
           + +  PE
Sbjct: 276 LTVTAPE 265

[Close]

BLAST of CsaV3_1G045400 vs. ExPASy TrEMBL
Match: A0A0A0M0F3 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G689640 PE=3 SV=1)

HSP 1 Score: 353.2 bits (905), Expect = 7.5e-94
Identity = 209/389 (53.73%), Postives = 210/389 (53.98%), Query Frame = 0


Query: 1   MANPTKSLVFIVFFHLFIQISTAANYNVISFGAKPDGKTDSTQSFLKAWTSACSSSTRST 60
           MANPTKSLVFIVFFHLFIQISTAANYNVISFGAKPDGKTDSTQSFLKAWTSACSSSTRST
Sbjct: 1   MANPTKSLVFIVFFHLFIQISTAANYNVISFGAKPDGKTDSTQSFLKAWTSACSSSTRST 60

Query: 61  INVPKGRFLLTPITFRGPCKNKITFLLNGTLVAPLDYRALGDSGYWILFIKVDGVSFVGG 120
           INVPKGRFLLTPITFRGPCKNKITFLLNGTLVAPLDYRALGDSGYWILFIKVDGVSFVGG
Sbjct: 61  INVPKGRFLLTPITFRGPCKNKITFLLNGTLVAPLDYRALGDSGYWILFIKVDGVSFVGG 120

Query: 121 TIDGKGTAYWACKNSAKNCPPGAR------------------------------------ 180
           TIDGKGTAYWACKNSAKNCPPGAR                                    
Sbjct: 121 TIDGKGTAYWACKNSAKNCPPGARSITFNWANNIILSGLTSINSQQTHVVINSCNNVVVK 180

Query: 181 ------------------------------------------------------------ 212
                                                                       
Sbjct: 181 NVKIMAPDQSPNTDGIHVQSSTNVTITGSTIKTGDDCISIGDGTKNLFMSDIKCGPGHGV 240

[Close]

BLAST of CsaV3_1G045400 vs. ExPASy TrEMBL
Match: A0A5A7VB33 (Polygalacturonase-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold2510G00550 PE=3 SV=1)

HSP 1 Score: 288.9 bits (738), Expect = 1.7e-74
Identity = 176/390 (45.13%), Postives = 190/390 (48.72%), Query Frame = 0


Query: 1   MANPTKSLVFIVFFHLFIQISTAANYNVISFGAKPDGKTDSTQSFLKAWTSACSSSTRST 60
           MAN  KSLVFIVFFHLFIQIS+A +YNVI+FGAKPDGKTDSTQSFLKAW SACSS TRST
Sbjct: 1   MANSRKSLVFIVFFHLFIQISSAGSYNVITFGAKPDGKTDSTQSFLKAWKSACSSLTRST 60

Query: 61  INVPKGRFLLTPITFRGPCK-NKITFLLNGTLVAPLDYRALGDSGYWILFIKVDGVSFVG 120
           INVPKGRFLLT ITFRGPCK N I FLLNGTLVAPLDY ALGDSGYWILF KV+GVSF+G
Sbjct: 61  INVPKGRFLLTAITFRGPCKNNNIIFLLNGTLVAPLDYNALGDSGYWILFTKVNGVSFIG 120

Query: 121 GTIDGKGTAYWACKNSAKNCPPGAR----------------------------------- 180
           G IDGKGTAYWACK S K CPPGAR                                   
Sbjct: 121 GNIDGKGTAYWACKGSGKKCPPGARSITFNWASNIIISGLTSINSRQTHIVINSCNNVVV 180

Query: 181 ------------------------------------------------------------ 212
                                                                       
Sbjct: 181 KNVKIMAPDQSPNTDGIHVQSSTGVTISGTTIKTGDDCISIGDGTKNLFMSDIKCGPGHG 240

[Close]

BLAST of CsaV3_1G045400 vs. ExPASy TrEMBL
Match: A0A1S3CD98 (polygalacturonase-like OS=Cucumis melo OX=3656 GN=LOC103499553 PE=3 SV=1)

HSP 1 Score: 288.9 bits (738), Expect = 1.7e-74
Identity = 176/390 (45.13%), Postives = 190/390 (48.72%), Query Frame = 0


Query: 1   MANPTKSLVFIVFFHLFIQISTAANYNVISFGAKPDGKTDSTQSFLKAWTSACSSSTRST 60
           MAN  KSLVFIVFFHLFIQIS+A +YNVI+FGAKPDGKTDSTQSFLKAW SACSS TRST
Sbjct: 1   MANSRKSLVFIVFFHLFIQISSAGSYNVITFGAKPDGKTDSTQSFLKAWKSACSSLTRST 60

Query: 61  INVPKGRFLLTPITFRGPCK-NKITFLLNGTLVAPLDYRALGDSGYWILFIKVDGVSFVG 120
           INVPKGRFLLT ITFRGPCK N I FLLNGTLVAPLDY ALGDSGYWILF KV+GVSF+G
Sbjct: 61  INVPKGRFLLTAITFRGPCKNNNIIFLLNGTLVAPLDYNALGDSGYWILFTKVNGVSFIG 120

Query: 121 GTIDGKGTAYWACKNSAKNCPPGAR----------------------------------- 180
           G IDGKGTAYWACK S K CPPGAR                                   
Sbjct: 121 GNIDGKGTAYWACKGSGKKCPPGARSITFNWASNIIISGLTSINSRQTHIVINSCNNVVV 180

Query: 181 ------------------------------------------------------------ 212
                                                                       
Sbjct: 181 KNVKIMAPDQSPNTDGIHVQSSTGVTISGTTIKTGDDCISIGDGTKNLFMSDIKCGPGHG 240

[Close]

BLAST of CsaV3_1G045400 vs. ExPASy TrEMBL
Match: A0A6J1JKS6 (polygalacturonase-like OS=Cucurbita maxima OX=3661 GN=LOC111486681 PE=3 SV=1)

HSP 1 Score: 256.5 bits (654), Expect = 9.6e-65
Identity = 155/389 (39.85%), Postives = 186/389 (47.81%), Query Frame = 0


Query: 1   MANPTKSLVFIV-FFHLFIQISTAANYNVISFGAKPDGKTDSTQSFLKAWTSACSSSTRS 60
           MAN  K+L+ I+  F+ FIQ+S+AA YNVI++GAKPDGKTDST+ FLKAWTSAC+SST S
Sbjct: 1   MANTIKTLLLIISSFYFFIQLSSAATYNVITYGAKPDGKTDSTRPFLKAWTSACTSSTPS 60

Query: 61  TINVPKGRFLLTPITFRGPCKNKITFLLNGTLVAPLDYRALGDSGYWILFIKVDGVSFVG 120
           TINVPKGRFLL PITFRGPCKNKITF LNGTLVAPLD+RALG SGYWILFIKV+ VSF G
Sbjct: 61  TINVPKGRFLLKPITFRGPCKNKITFRLNGTLVAPLDFRALGSSGYWILFIKVNDVSFFG 120

Query: 121 GTIDGKGTAYWACKNSAKNCPPGAR----------------------------------- 180
           G ID KG +YWACK+S K+CPPGAR                                   
Sbjct: 121 GNIDAKGASYWACKDSGKDCPPGARSLTFNWANNIYLSGLTSINSRQSHITINSCNNVLV 180

Query: 181 ------------------------------------------------------------ 211
                                                                       
Sbjct: 181 KNVKIMAPDQSPNTDGIHVQSSTDVTITGTTIQTGDDCISIGDGTKNLFMAHIKCGPGHG 240

[Close]

BLAST of CsaV3_1G045400 vs. ExPASy TrEMBL
Match: A0A0A0KZM5 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G153300 PE=3 SV=1)

HSP 1 Score: 255.4 bits (651), Expect = 2.1e-64
Identity = 123/145 (84.83%), Postives = 130/145 (89.66%), Query Frame = 0


Query: 1   MANPTKSLVFIVFFHLFIQISTAANYNVISFGAKPDGKTDSTQSFLKAWTSACSSSTRST 60
           MANPTKSLVF++FFHLFIQIS+A NYNVI+FGAKPDGKTDSTQSFLKAW SACSS TRST
Sbjct: 1   MANPTKSLVFVLFFHLFIQISSAGNYNVITFGAKPDGKTDSTQSFLKAWMSACSSLTRST 60

Query: 61  INVPKGRFLLTPITFRGPCKN-KITFLLNGTLVAPLDYRALGDSGYWILFIKVDGVSFVG 120
           INVPKGRFLLT ITFRGPCKN  ITF LNGTLVAPLDY ALGDS YWILF KV+G+SF+G
Sbjct: 61  INVPKGRFLLTSITFRGPCKNSNITFQLNGTLVAPLDYNALGDSRYWILFTKVNGISFIG 120

Query: 121 GTIDGKGTAYWACKNSAKNCPPGAR 145
           G IDGKGT YWACK S K CPPGAR
Sbjct: 121 GNIDGKGTDYWACKGSGKKCPPGAR 145

[Close]

BLAST of CsaV3_1G045400 vs. TAIR 10
Match: AT2G43890.1 (Pectin lyase-like superfamily protein )

HSP 1 Score: 188.0 bits (476), Expect = 8.0e-48
Identity = 96/220 (43.64%), Postives = 144/220 (65.45%), Query Frame = 0


Query: 1   MANPTKSLVFIVFFHLFIQI---STAANYNVISFGAKPDGKTDSTQSFLKAWTSACSSST 60
           M N     V ++FF  F+ +   + A+NYNV+SFGAKPDG+TDST++FL AW +AC S+ 
Sbjct: 1   MDNNKLVAVLLMFFSSFLLMKSSTAASNYNVVSFGAKPDGRTDSTKAFLGAWQAACRSAA 60

Query: 61  RSTINVPKGRFLLTPITFRGPCKNKITFLLNGTLVAPLDYRALGDSGYWILFIKVDGVSF 120
             T+ VP+G FLL P+ FRGPC+++ITF + GT+VAP DYR LG+SGYWILF+KV+ +S 
Sbjct: 61  AVTVTVPRGSFLLKPVEFRGPCRSRITFQIYGTIVAPSDYRGLGNSGYWILFVKVNRISI 120

Query: 121 VGGTIDGKGTAYWACKNSAKNCPPGAR------INDVTYKSIEGTSATSEAVTFDCSSSS 180
           +GGT+D +G ++WAC+ S K+CP GAR       NDV    +  TS  S+      +S  
Sbjct: 121 IGGTLDARGASFWACRKSGKSCPVGARSMTFNWANDVVVSGL--TSINSQTTHLVINS-- 180

Query: 181 PCSDIKLEDIKLTYKNKTTISSCKNIGGSSIGLVVPETCF 212
            C+++ +  +KL   +++  +   ++ GS+ G+ V +  F
Sbjct: 181 -CNNVIVRKVKLVAPDQSPNTDGLHVQGSA-GVTVTDGTF 214

[Close]

BLAST of CsaV3_1G045400 vs. TAIR 10
Match: AT1G05660.1 (Pectin lyase-like superfamily protein )

HSP 1 Score: 171.8 bits (434), Expect = 6.0e-43
Identity = 87/201 (43.28%), Postives = 126/201 (62.69%), Query Frame = 0


Query: 7   SLVFIVFFHLFIQISTAANYNVISFGAKPDGKTDSTQSFLKAWTSACSSSTRSTINVPKG 66
           SL+F +   + + IS +  +NV+SFGAKPDG TDST +FLKAW  AC S++ +T+ VPKG
Sbjct: 9   SLLFTLLTFIDVSISASNVFNVVSFGAKPDGVTDSTGAFLKAWQGACVSASSATVVVPKG 68

Query: 67  RFLLTPITFRGPCKNKITFLLNGTLVAPLDYRALGDSGYWILFIKVDGVSFVGGTIDGKG 126
            FLL  ITF GPCK+KITF + GT++AP DYR  G+SG+WILF KV+  S VGGT D + 
Sbjct: 69  TFLLKVITFGGPCKSKITFQVAGTVIAPEDYRTFGNSGFWILFNKVNRFSLVGGTFDARA 128

Query: 127 TAYWACKNSAKNCPPGARINDVTYKSIEGTSATSEAVTFDCSSSSPCSDIKLEDIKLTYK 186
             +W+C+ S +NCPPG R                 +++F+ +     S +K  + ++T+ 
Sbjct: 129 NGFWSCRKSGQNCPPGVR-----------------SISFNSAKDVIISGVKSMNSQVTH- 188

Query: 187 NKTTISSCKNIGGSSIGLVVP 208
              T++ C N+   ++ LV P
Sbjct: 189 --MTLNGCTNVVVRNVKLVAP 189

[Close]

BLAST of CsaV3_1G045400 vs. TAIR 10
Match: AT1G05650.1 (Pectin lyase-like superfamily protein )

HSP 1 Score: 171.0 bits (432), Expect = 1.0e-42
Identity = 93/208 (44.71%), Postives = 131/208 (62.98%), Query Frame = 0


Query: 5   TKS-LVFIVFFHL--FIQISTAAN--YNVISFGAKPDGKTDSTQSFLKAWTSACSSSTRS 64
           TKS + F + F L  FI +S++A+  +NV+SFGAKPDG TDST +FLKAW  AC S+  +
Sbjct: 2   TKSAITFPLIFTLLTFIDVSSSASIVFNVVSFGAKPDGVTDSTAAFLKAWQGACGSAASA 61

Query: 65  TINVPKGRFLLTPITFRGPCKNKITFLLNGTLVAPLDYRALGDSGYWILFIKVDGVSFVG 124
           T+ VP G FLL  ITF GPCK+KITF + GT+VAP DYR  G+SG WILF KV+  S VG
Sbjct: 62  TVVVPTGTFLLKVITFGGPCKSKITFQVTGTVVAPEDYRTFGNSGSWILFNKVNRFSLVG 121

Query: 125 GTIDGKGTAYWACKNSAKNCPPGARINDVTYKSIEGTSATSEAVTFDCSSSSPCSDIKLE 184
           GT D +G+ +W+C+ S +NCPPG R                 +++F+ +     S +K  
Sbjct: 122 GTFDARGSGFWSCRKSGQNCPPGVR-----------------SISFNSAKDVIISGVKSM 181

Query: 185 DIKLTYKNKTTISSCKNIGGSSIGLVVP 208
           + ++++    T++ C N+   +I LV P
Sbjct: 182 NSQVSH---MTLNGCTNVAVRNIRLVAP 189

[Close]

BLAST of CsaV3_1G045400 vs. TAIR 10
Match: AT3G59850.1 (Pectin lyase-like superfamily protein )

HSP 1 Score: 157.1 bits (396), Expect = 1.5e-38
Identity = 83/181 (45.86%), Postives = 116/181 (64.09%), Query Frame = 0


Query: 7   SLVFIVFFHLFIQISTAANYNVISFGAKPDGKTDSTQSFLKAWTSACSSSTRSTINVPKG 66
           SL+ ++ F L +  S+A  YN++S+GAKPDGKTDST++F   W  AC+S    TI VPKG
Sbjct: 4   SLLIVLLFLLSVSSSSAQTYNILSYGAKPDGKTDSTKAFTVLWAKACASVKPVTILVPKG 63

Query: 67  RFLLTPITFRG-PCKNK-ITFLLNGTLVAPLDYRALGDSGYWILFIKVDGVSFVGGTIDG 126
           RFLL  I F G  CK K +TF + GTLVAP DYR +G   YWILF  +DG+S  GG +D 
Sbjct: 64  RFLLRSIIFDGSKCKRKSVTFRIQGTLVAPSDYRVIGKENYWILFQHLDGISVYGGVLDA 123

Query: 127 KGTAYWACKNSAKNCPPGA-RINDVTYKSIEGTSATSEAVTFDCSSSSPCSDIKLEDIKL 185
           +G + W+CK S KNCP GA  I   + +++  +  TS        + + CS++KL+ +K+
Sbjct: 124 QGASLWSCKKSGKNCPSGATSIGFQSSRNVVISGLTSLNSQMFHVAINGCSNVKLDGVKV 183

[Close]

BLAST of CsaV3_1G045400 vs. TAIR 10
Match: AT2G43870.1 (Pectin lyase-like superfamily protein )

HSP 1 Score: 156.0 bits (393), Expect = 3.4e-38
Identity = 84/179 (46.93%), Postives = 116/179 (64.80%), Query Frame = 0


Query: 8   LVFIVFFHLFIQISTAANYNVISFGAKPDGKTDSTQSFLKAWTSACSSSTRSTINVPKGR 67
           LV  VFF  FI   +A +YNV+SFGAKPDGKTD+T++F+  W +AC+SS   TI VPKGR
Sbjct: 5   LVLFVFF--FISSCSAQSYNVLSFGAKPDGKTDATKAFMAVWQTACASSRPVTIVVPKGR 64

Query: 68  FLLTPITFRG-PCKNK-ITFLLNGTLVAPLDYRALGDSGYWILFIKVDGVSFVGGTIDGK 127
           FLL  +TF G  CK K +TF ++GTLVAP DYR +G+  YWI F  +DG++  GG +D +
Sbjct: 65  FLLRSVTFDGSKCKPKPVTFRIDGTLVAPADYRVIGNEDYWIFFQHLDGITVYGGVLDAR 124

Query: 128 GTAYWACKNSAKNCPPGA-RINDVTYKSIEGTSATSEAVTFDCSSSSPCSDIKLEDIKL 184
           G + W CK S KNCP GA  I   +  ++  +  TS          + C+++KL+ +K+
Sbjct: 125 GASLWDCKKSGKNCPSGATTIGFQSSSNVVVSGLTSLNSQMFHVVINGCNNVKLQGVKV 181

The following BLAST results are available for this feature:

BLAST of CsaV3_1G045400 vs. NCBI nr


Match Name	E-value	Identity	Description
KAE8653617.1	2.2e-116	100.00	hypothetical protein Csa_007133 [Cucumis sativus]	[more]
XP_031736043.1	1.8e-94	54.24	polygalacturonase-like [Cucumis sativus]	[more]
XP_004142576.2	1.5e-93	53.73	polygalacturonase [Cucumis sativus] >XP_031745382.1 polygalacturonase-like [Cucu...	[more]
KAE8637259.1	7.7e-77	100.00	hypothetical protein CSA_017675, partial [Cucumis sativus]	[more]
XP_008460791.1	3.6e-74	45.13	PREDICTED: polygalacturonase-like [Cucumis melo] >KAA0063115.1 polygalacturonase...	[more]

BLAST of CsaV3_1G045400 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
P48979	1.1e-33	29.17	Polygalacturonase OS=Prunus persica OX=3760 PE=2 SV=1	[more]
O22818	3.8e-26	49.59	Probable polygalacturonase At2g43860 OS=Arabidopsis thaliana OX=3702 GN=At2g4386...	[more]
P35339	2.1e-21	32.29	Exopolygalacturonase OS=Zea mays OX=4577 GN=PG2C PE=2 SV=1	[more]
P26216	5.3e-20	31.25	Exopolygalacturonase OS=Zea mays OX=4577 GN=PG1 PE=1 SV=1	[more]
P48978	3.4e-19	34.22	Polygalacturonase OS=Malus domestica OX=3750 PE=2 SV=1	[more]

BLAST of CsaV3_1G045400 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0M0F3	7.5e-94	53.73	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G689640 PE=3 SV=1	[more]
A0A5A7VB33	1.7e-74	45.13	Polygalacturonase-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold2...	[more]
A0A1S3CD98	1.7e-74	45.13	polygalacturonase-like OS=Cucumis melo OX=3656 GN=LOC103499553 PE=3 SV=1	[more]
A0A6J1JKS6	9.6e-65	39.85	polygalacturonase-like OS=Cucurbita maxima OX=3661 GN=LOC111486681 PE=3 SV=1	[more]
A0A0A0KZM5	2.1e-64	84.83	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G153300 PE=3 SV=1	[more]

BLAST of CsaV3_1G045400 vs. TAIR 10


Match Name	E-value	Identity	Description
AT2G43890.1	8.0e-48	43.64	Pectin lyase-like superfamily protein	[more]
AT1G05660.1	6.0e-43	43.28	Pectin lyase-like superfamily protein	[more]
AT1G05650.1	1.0e-42	44.71	Pectin lyase-like superfamily protein	[more]
AT3G59850.1	1.5e-38	45.86	Pectin lyase-like superfamily protein	[more]
AT2G43870.1	3.4e-38	46.93	Pectin lyase-like superfamily protein	[more]

InterPro

Analysis Name: InterPro Annotations of Cucumber (Chinese Long) v3
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR012334	Pectin lyase fold	GENE3D	2.160.20.10		coord: 17..136 e-value: 3.1E-27 score: 97.5 coord: 137..209 e-value: 3.5E-14 score: 54.5
IPR000743	Glycoside hydrolase, family 28	PFAM	PF00295	Glyco_hydro_28	coord: 53..137 e-value: 1.3E-12 score: 47.5
None	No IPR available	PANTHER	PTHR31375:SF31	PECTIN LYASE-LIKE SUPERFAMILY PROTEIN	coord: 142..210
None	No IPR available	PANTHER	PTHR31375	FAMILY NOT NAMED	coord: 142..210
None	No IPR available	PANTHER	PTHR31375	FAMILY NOT NAMED	coord: 9..141
None	No IPR available	PANTHER	PTHR31375:SF31	PECTIN LYASE-LIKE SUPERFAMILY PROTEIN	coord: 9..141
IPR011050	Pectin lyase fold/virulence factor	SUPERFAMILY	51126	Pectin lyase-like	coord: 136..211
IPR011050	Pectin lyase fold/virulence factor	SUPERFAMILY	51126	Pectin lyase-like	coord: 10..131

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CsaV3_1G045400.1	CsaV3_1G045400.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0005975	carbohydrate metabolic process
molecular_function	GO:0004650	polygalacturonase activity