CsaV3_1G044300 (gene) Cucumber (Chinese Long) v3

Overview


Name	CsaV3_1G044300
Type	gene
Organism	Cucumis sativus L. var. sativus cv. Chinese Long (Cucumber (Chinese Long) v3)
Description	ycf20-like protein
Location	chr1: 29560199 .. 29561718 (+)
RNA-Seq Expression	CsaV3_1G044300
Synteny	CsaV3_1G044300

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGAAGTGGGCATCTTCCAGATGGGTGCAGTAATTTTGCACTCCAGATTATTGACAACAGCGAATTATAGCCCTCAAGTATCATGTCTTACCAATATGCCCTGCCTAATCCACTACTGGGGCTATGAGGCTATCTTTAATGGACGCAGTTCAAGCTTTCTCCTGAAATCTGCACCATTTCCTCGAAAAAGGTACAAGTGGAGTTTTTAAACTTGTATCACGCCTTGTTAAGAGGCCTGCGCTATTTTTCTTGCGTATATTTCCATTTTAATTGTTGAATCCTTGGGTAATTAGATAACTGCTTATATTATATTGAGAACTAGAGAGGAATATTAGTTCTTAGAGAGATTGGAAGATCTTGGGTGGAGGTCAGAGCCGTCGCTAGGTTTAAAGCATCTGTGCGGGTGTATCCACTCTTTGTTTGTAATTACCAGCTTGGTTTCATTCTTTTGGATTGGTGTCGGCTCTTCTAATTATTGTTAGAATCAGTGTTTCAAAAGCCCGCTTGGAGGCGCACGCCTAGGCTCAAGGCTCAAGGCTCAAGTTTAGCGCCTTGGATTGAAAAAGCAAGCCTCATGAAATAAGGCATGCCTTAGGTGCACGCCTTTTGTGATGTCCCATGGCTCAAAGCCCTGGCCCTTGGGGCTTTTTCATTATTTCTAATAAAAGTAATAATTAGGGTTTTTTCCTTCTTTATTAACTAAAATGATTAAATTTAGTAAGCCCAAATGCAAAATTTGTTGTGTTTAGTGGGTTTCCGTTTCCTATATGTCCACTTTAACCATGCTTTCTCATGAATGTAGTATGTTTATATATAATGCGCCTCATTGAAGAACTATTGCGTTGAGCCCTAAAAACTATTGCGCTAAGCCCTAAAGAGTATTGCGTTTTCTTGTGGGTTGAGGTTTAAGAAACACTGGTTGGGACTTTGACTCCTTATGTCATGTGAAATTGTTCTTTTGTATCTTCTTGTGCATTCTTTCATTTTTCTCAACAAAAGCTCGGTTTCGTATGAAAGGAAGTTTATATATAAATGCTGTTATGAACCTGTTTGTGATGTTACTTGTTACAGTCTCCAGACGAGTAGACATGTCAATAAATTAGCCTTTGCATTAGATACAGGTGGGGTATCTAGTAGTGGTGGGGGAGACAACATCGACGATGGTGATGAGTCCAATCTGGGTCGTACTCGATTAGGCAGGCTAGTTAGTTCAGGTGCCAGACAGTTGCTGGAAAAACTGAACTCAGCGAGAAAAAACTTTCCTACAAAGATATTTTTGCTTCTTTTGGGTTTCTATACAGCAAATGCACTTGCTACAATTCTTGGACAGACGGGTGATTGGGATGTTTTGGTTGCTGGTGTGGTGGTTGCTGCTATAGAATGGATTGGTATACTCATGTACAGGAAGCCTCCACCTCTATTAACTAGGAGGCTGAAATCATTTATTGTAATGGTTAACTATTGGAAAGCTGGTGTGTGCTTGGGCCTCTTTGTCGATGCGTTCAAATTAGGGAGTTGA

mRNA sequence

ATGGAAGTGGGCATCTTCCAGATGGGTGCAGTAATTTTGCACTCCAGATTATTGACAACAGCGAATTATAGCCCTCAAGTATCATGTCTTACCAATATGCCCTGCCTAATCCACTACTGGGGCTATGAGGCTATCTTTAATGGACGCAGTTCAAGCTTTCTCCTGAAATCTGCACCATTTCCTCGAAAAAGTCTCCAGACGAGTAGACATGTCAATAAATTAGCCTTTGCATTAGATACAGGTGGGGTATCTAGTAGTGGTGGGGGAGACAACATCGACGATGGTGATGAGTCCAATCTGGGTCGTACTCGATTAGGCAGGCTAGTTAGTTCAGGTGCCAGACAGTTGCTGGAAAAACTGAACTCAGCGAGAAAAAACTTTCCTACAAAGATATTTTTGCTTCTTTTGGGTTTCTATACAGCAAATGCACTTGCTACAATTCTTGGACAGACGGGTGATTGGGATGTTTTGGTTGCTGGTGTGGTGGTTGCTGCTATAGAATGGATTGGTATACTCATGTACAGGAAGCCTCCACCTCTATTAACTAGGAGGCTGAAATCATTTATTGTAATGGTTAACTATTGGAAAGCTGGTGTGTGCTTGGGCCTCTTTGTCGATGCGTTCAAATTAGGGAGTTGA

Coding sequence (CDS)

ATGGAAGTGGGCATCTTCCAGATGGGTGCAGTAATTTTGCACTCCAGATTATTGACAACAGCGAATTATAGCCCTCAAGTATCATGTCTTACCAATATGCCCTGCCTAATCCACTACTGGGGCTATGAGGCTATCTTTAATGGACGCAGTTCAAGCTTTCTCCTGAAATCTGCACCATTTCCTCGAAAAAGTCTCCAGACGAGTAGACATGTCAATAAATTAGCCTTTGCATTAGATACAGGTGGGGTATCTAGTAGTGGTGGGGGAGACAACATCGACGATGGTGATGAGTCCAATCTGGGTCGTACTCGATTAGGCAGGCTAGTTAGTTCAGGTGCCAGACAGTTGCTGGAAAAACTGAACTCAGCGAGAAAAAACTTTCCTACAAAGATATTTTTGCTTCTTTTGGGTTTCTATACAGCAAATGCACTTGCTACAATTCTTGGACAGACGGGTGATTGGGATGTTTTGGTTGCTGGTGTGGTGGTTGCTGCTATAGAATGGATTGGTATACTCATGTACAGGAAGCCTCCACCTCTATTAACTAGGAGGCTGAAATCATTTATTGTAATGGTTAACTATTGGAAAGCTGGTGTGTGCTTGGGCCTCTTTGTCGATGCGTTCAAATTAGGGAGTTGA

Protein sequence

MEVGIFQMGAVILHSRLLTTANYSPQVSCLTNMPCLIHYWGYEAIFNGRSSSFLLKSAPFPRKSLQTSRHVNKLAFALDTGGVSSSGGGDNIDDGDESNLGRTRLGRLVSSGARQLLEKLNSARKNFPTKIFLLLLGFYTANALATILGQTGDWDVLVAGVVVAAIEWIGILMYRKPPPLLTRRLKSFIVMVNYWKAGVCLGLFVDAFKLGS*

Homology

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BLAST of CsaV3_1G044300 vs. NCBI nr
Match: XP_011660206.1 (ycf20-like protein [Cucumis sativus] >XP_011660207.1 ycf20-like protein [Cucumis sativus] >KGN66645.1 hypothetical protein Csa_007230 [Cucumis sativus])

HSP 1 Score: 421.8 bits (1083), Expect = 3.6e-114
Identity = 212/212 (100.00%), Postives = 212/212 (100.00%), Query Frame = 0


Query: 1   MEVGIFQMGAVILHSRLLTTANYSPQVSCLTNMPCLIHYWGYEAIFNGRSSSFLLKSAPF 60
           MEVGIFQMGAVILHSRLLTTANYSPQVSCLTNMPCLIHYWGYEAIFNGRSSSFLLKSAPF
Sbjct: 1   MEVGIFQMGAVILHSRLLTTANYSPQVSCLTNMPCLIHYWGYEAIFNGRSSSFLLKSAPF 60

Query: 61  PRKSLQTSRHVNKLAFALDTGGVSSSGGGDNIDDGDESNLGRTRLGRLVSSGARQLLEKL 120
           PRKSLQTSRHVNKLAFALDTGGVSSSGGGDNIDDGDESNLGRTRLGRLVSSGARQLLEKL
Sbjct: 61  PRKSLQTSRHVNKLAFALDTGGVSSSGGGDNIDDGDESNLGRTRLGRLVSSGARQLLEKL 120

Query: 121 NSARKNFPTKIFLLLLGFYTANALATILGQTGDWDVLVAGVVVAAIEWIGILMYRKPPPL 180
           NSARKNFPTKIFLLLLGFYTANALATILGQTGDWDVLVAGVVVAAIEWIGILMYRKPPPL
Sbjct: 121 NSARKNFPTKIFLLLLGFYTANALATILGQTGDWDVLVAGVVVAAIEWIGILMYRKPPPL 180

Query: 181 LTRRLKSFIVMVNYWKAGVCLGLFVDAFKLGS 213
           LTRRLKSFIVMVNYWKAGVCLGLFVDAFKLGS
Sbjct: 181 LTRRLKSFIVMVNYWKAGVCLGLFVDAFKLGS 212

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BLAST of CsaV3_1G044300 vs. NCBI nr
Match: XP_038878602.1 (ycf20-like protein [Benincasa hispida] >XP_038878603.1 ycf20-like protein [Benincasa hispida] >XP_038878605.1 ycf20-like protein [Benincasa hispida] >XP_038878606.1 ycf20-like protein [Benincasa hispida])

HSP 1 Score: 368.6 bits (945), Expect = 3.6e-98
Identity = 186/212 (87.74%), Postives = 195/212 (91.98%), Query Frame = 0


Query: 1   MEVGIFQMGAVILHSRLLTTANYSPQVSCLTNMPCLIHYWGYEAIFNGRSSSFLLKSAPF 60
           M++ I QM AVIL SRLLT ANYS + SCLTNMPCL+HYWG EA FNG +SS  LKSA F
Sbjct: 1   MQMSICQMEAVILQSRLLTIANYSSKGSCLTNMPCLLHYWGREAFFNGHNSSPFLKSALF 60

Query: 61  PRKSLQTSRHVNKLAFALDTGGVSSSGGGDNIDDGDESNLGRTRLGRLVSSGARQLLEKL 120
           PRKS QTSRH+ KLAFALDTGGVSS+GGGD +DDGD+SNLGRTRLGRLVSSGARQLLEKL
Sbjct: 61  PRKSFQTSRHLKKLAFALDTGGVSSNGGGDKVDDGDDSNLGRTRLGRLVSSGARQLLEKL 120

Query: 121 NSARKNFPTKIFLLLLGFYTANALATILGQTGDWDVLVAGVVVAAIEWIGILMYRKPPPL 180
           NSARKNFPTKIFLLLLGFYTANALATILGQTGDWDVLVAGVVVAAIEWIGILMYRKPPPL
Sbjct: 121 NSARKNFPTKIFLLLLGFYTANALATILGQTGDWDVLVAGVVVAAIEWIGILMYRKPPPL 180

Query: 181 LTRRLKSFIVMVNYWKAGVCLGLFVDAFKLGS 213
           LTRRLKSFI MVNYWKAGVCLGLFVDAFKLGS
Sbjct: 181 LTRRLKSFIAMVNYWKAGVCLGLFVDAFKLGS 212

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BLAST of CsaV3_1G044300 vs. NCBI nr
Match: XP_022924878.1 (ycf20-like protein [Cucurbita moschata] >XP_022924885.1 ycf20-like protein [Cucurbita moschata] >XP_022924895.1 ycf20-like protein [Cucurbita moschata] >XP_022924902.1 ycf20-like protein [Cucurbita moschata] >XP_022924910.1 ycf20-like protein [Cucurbita moschata] >XP_022924918.1 ycf20-like protein [Cucurbita moschata] >KAG7022187.1 Ycf20-like protein [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 343.2 bits (879), Expect = 1.6e-90
Identity = 172/205 (83.90%), Postives = 187/205 (91.22%), Query Frame = 0


Query: 8   MGAVILHSRLLTTANYSPQVSCLTNMPCLIHYWGYEAIFNGRSSSFLLKSAPFPRKSLQT 67
           M A+I+ SRLLT ANY  +  CLT MPCLIH  GY AI NG +S+  LKSAPFPRKS +T
Sbjct: 1   MEAMIMQSRLLTIANYISKGLCLTYMPCLIHNMGYVAILNGHNSTLCLKSAPFPRKSFRT 60

Query: 68  SRHVNKLAFALDTGGVSSSGGGDNIDDGDESNLGRTRLGRLVSSGARQLLEKLNSARKNF 127
           SRH+ +LAFALDTGGVSS+GGGDN+DDG+ESNLGRTRLGRLVS+GARQLLEKLNSARKNF
Sbjct: 61  SRHLQQLAFALDTGGVSSNGGGDNLDDGNESNLGRTRLGRLVSAGARQLLEKLNSARKNF 120

Query: 128 PTKIFLLLLGFYTANALATILGQTGDWDVLVAGVVVAAIEWIGILMYRKPPPLLTRRLKS 187
           PTKIFLLLLGFYTANALATILGQTGDWDVLVAGVVVAAIEWIGILMY+KPPPLLTRRLKS
Sbjct: 121 PTKIFLLLLGFYTANALATILGQTGDWDVLVAGVVVAAIEWIGILMYKKPPPLLTRRLKS 180

Query: 188 FIVMVNYWKAGVCLGLFVDAFKLGS 213
            IV++NYWKAGVCLGLFVDAFKLGS
Sbjct: 181 LIVLINYWKAGVCLGLFVDAFKLGS 205

[Close]

BLAST of CsaV3_1G044300 vs. NCBI nr
Match: XP_023520636.1 (ycf20-like protein [Cucurbita pepo subsp. pepo] >XP_023520637.1 ycf20-like protein [Cucurbita pepo subsp. pepo] >XP_023520638.1 ycf20-like protein [Cucurbita pepo subsp. pepo] >XP_023520639.1 ycf20-like protein [Cucurbita pepo subsp. pepo] >XP_023520640.1 ycf20-like protein [Cucurbita pepo subsp. pepo])

HSP 1 Score: 341.7 bits (875), Expect = 4.7e-90
Identity = 171/205 (83.41%), Postives = 186/205 (90.73%), Query Frame = 0


Query: 8   MGAVILHSRLLTTANYSPQVSCLTNMPCLIHYWGYEAIFNGRSSSFLLKSAPFPRKSLQT 67
           M A+I+ SRLLT ANY  +  CLT MPCLIH  GY AI NG +S+  LKS PFPRKS +T
Sbjct: 1   MEAMIMQSRLLTIANYISKGLCLTYMPCLIHNMGYVAILNGHNSTLCLKSVPFPRKSFRT 60

Query: 68  SRHVNKLAFALDTGGVSSSGGGDNIDDGDESNLGRTRLGRLVSSGARQLLEKLNSARKNF 127
           SRH+ +LAFALDTGGVSS+GGGDN+DDG+ESNLGRTRLGRLVS+GARQLLEKLNSARKNF
Sbjct: 61  SRHLQQLAFALDTGGVSSNGGGDNLDDGNESNLGRTRLGRLVSAGARQLLEKLNSARKNF 120

Query: 128 PTKIFLLLLGFYTANALATILGQTGDWDVLVAGVVVAAIEWIGILMYRKPPPLLTRRLKS 187
           PTKIFLLLLGFYTANALATILGQTGDWDVLVAGVVVAAIEWIGILMY+KPPPLLTRRLKS
Sbjct: 121 PTKIFLLLLGFYTANALATILGQTGDWDVLVAGVVVAAIEWIGILMYKKPPPLLTRRLKS 180

Query: 188 FIVMVNYWKAGVCLGLFVDAFKLGS 213
            IV++NYWKAGVCLGLFVDAFKLGS
Sbjct: 181 LIVLINYWKAGVCLGLFVDAFKLGS 205

[Close]

BLAST of CsaV3_1G044300 vs. NCBI nr
Match: XP_022973215.1 (ycf20-like protein [Cucurbita maxima] >XP_022973224.1 ycf20-like protein [Cucurbita maxima] >XP_022973228.1 ycf20-like protein [Cucurbita maxima] >XP_022973233.1 ycf20-like protein [Cucurbita maxima] >XP_022973241.1 ycf20-like protein [Cucurbita maxima] >XP_022973250.1 ycf20-like protein [Cucurbita maxima])

HSP 1 Score: 340.5 bits (872), Expect = 1.0e-89
Identity = 171/205 (83.41%), Postives = 186/205 (90.73%), Query Frame = 0


Query: 8   MGAVILHSRLLTTANYSPQVSCLTNMPCLIHYWGYEAIFNGRSSSFLLKSAPFPRKSLQT 67
           M A+I+ SRLLT ANY  +  CLT MPCLIH   Y AI NG +S+  LKSAPFPRKS +T
Sbjct: 1   MEAMIMQSRLLTIANYISKGLCLTYMPCLIHNMDYVAILNGHNSTLCLKSAPFPRKSFRT 60

Query: 68  SRHVNKLAFALDTGGVSSSGGGDNIDDGDESNLGRTRLGRLVSSGARQLLEKLNSARKNF 127
           SRH+ +LAFALDTGGVSS+GGGDN+DDG+ESNLGRTRLGRLVS+GARQLLEKLNSARKNF
Sbjct: 61  SRHLQQLAFALDTGGVSSNGGGDNLDDGNESNLGRTRLGRLVSAGARQLLEKLNSARKNF 120

Query: 128 PTKIFLLLLGFYTANALATILGQTGDWDVLVAGVVVAAIEWIGILMYRKPPPLLTRRLKS 187
           PTKIFLLLLGFYTANALATILGQTGDWDVLVAGVVVAAIEWIGILMY+KPPPLLTRRLKS
Sbjct: 121 PTKIFLLLLGFYTANALATILGQTGDWDVLVAGVVVAAIEWIGILMYKKPPPLLTRRLKS 180

Query: 188 FIVMVNYWKAGVCLGLFVDAFKLGS 213
            IV++NYWKAGVCLGLFVDAFKLGS
Sbjct: 181 LIVLINYWKAGVCLGLFVDAFKLGS 205

[Close]

BLAST of CsaV3_1G044300 vs. ExPASy Swiss-Prot
Match: O80813 (Ycf20-like protein OS=Arabidopsis thaliana OX=3702 GN=At1g65420 PE=2 SV=2)

HSP 1 Score: 206.5 bits (524), Expect = 3.1e-52
Identity = 108/166 (65.06%), Postives = 130/166 (78.31%), Query Frame = 0


Query: 49  RSSSFLLKSAPFPRKSLQTSRHVNKLAFALDTGGVSSSGGGDNID-DGDESNLGRTRLGR 108
           ++SS  L S P+P KS Q  R   K+AFALDTG       G+  + +GD + LG TRLGR
Sbjct: 32  KASSITLTSFPYPMKSFQIRRPNRKIAFALDTGSSIPGDSGEGQEMNGDRTGLGSTRLGR 91

Query: 109 LVSSGARQLLEKLNSARKNFPTKIFLLLLGFYTANALATILGQTGDWDVLVAGVVVAAIE 168
           +  +G +QLL K+NSARKNFP KIFLLLLGFYTANALATILGQTGDWDVLVAG+VVAAIE
Sbjct: 92  IAIAGGKQLLGKINSARKNFPMKIFLLLLGFYTANALATILGQTGDWDVLVAGIVVAAIE 151

Query: 169 WIGILMYRKP-PPLLTRRLKSFIVMVNYWKAGVCLGLFVDAFKLGS 213
            IG+LMY+KP   + + +L+SF+V +N+WKAGVCLGLFVDAFKLGS
Sbjct: 152 GIGMLMYKKPSSSMFSGKLQSFVVFMNFWKAGVCLGLFVDAFKLGS 197

[Close]

BLAST of CsaV3_1G044300 vs. ExPASy Swiss-Prot
Match: Q9MUL5 (Uncharacterized protein ycf20 OS=Mesostigma viride OX=41882 GN=ycf20 PE=3 SV=1)

HSP 1 Score: 95.5 bits (236), Expect = 7.7e-19
Identity = 57/118 (48.31%), Postives = 76/118 (64.41%), Query Frame = 0


Query: 100 LGRTRLGRLVSSGARQLLEKLNSARKNFPTKIFLLLLGFYTANALATILGQTGDWDVLVA 159
           +  TRL    ++  + L  K+ +   NFP KI LLLLGF+ A  LAT+ GQTGDWDVLVA
Sbjct: 1   MSNTRLTLFFTNIFQLLDSKIQNYSINFPIKILLLLLGFFIATVLATVFGQTGDWDVLVA 60

Query: 160 GVVVAAIEWIGILMYRKPPPLLTRRLK---SF--IVMVNYWKAGVCLGLFVDAFKLGS 213
           G++VA IE +G  MY K    ++++     SF  ++ +NY K G+  GLFVDAFKLGS
Sbjct: 61  GILVAMIEILGNKMYSK--KYISKKQVFDISFLSLIGINYIKIGLIFGLFVDAFKLGS 116

[Close]

BLAST of CsaV3_1G044300 vs. ExPASy Swiss-Prot
Match: Q1XDS2 (Uncharacterized protein ycf20 OS=Pyropia yezoensis OX=2788 GN=ycf20 PE=3 SV=1)

HSP 1 Score: 74.3 bits (181), Expect = 1.8e-12
Identity = 43/111 (38.74%), Postives = 62/111 (55.86%), Query Frame = 0


Query: 102 RTRLGRLVSSGARQLLEKLNSARKNFPTKIFLLLLGFYTANALATILGQTGDWDVLVAGV 161
           +TRL    +   + L  KL  +     T +  LLLGF+ +  L+TI GQTGDW ++ A +
Sbjct: 3   KTRLSTFFAYLIKNLNNKLYYSLSELTTGLISLLLGFFISTGLSTIPGQTGDWGIIAASL 62

Query: 162 VVAAIEWIGILMYRKPPPLLTRRLKSFIVMVNYWKAGVCLGLFVDAFKLGS 213
           +VAA E    ++Y        ++L   I + N +K G+  GLFVDAFKLGS
Sbjct: 63  IVAATELTSKIVYSS-----HKQLNIKINLFNNFKIGITYGLFVDAFKLGS 108

[Close]

BLAST of CsaV3_1G044300 vs. ExPASy Swiss-Prot
Match: P51214 (Uncharacterized protein ycf20 OS=Porphyra purpurea OX=2787 GN=ycf20 PE=3 SV=1)

HSP 1 Score: 73.9 bits (180), Expect = 2.4e-12
Identity = 43/111 (38.74%), Postives = 61/111 (54.95%), Query Frame = 0


Query: 102 RTRLGRLVSSGARQLLEKLNSARKNFPTKIFLLLLGFYTANALATILGQTGDWDVLVAGV 161
           RT+L    S   + L  +L  +       +  LLLGF+ +  L+TI GQTGDW ++ A +
Sbjct: 3   RTKLSIFFSYFVQNLSSRLYYSLNELTAGLISLLLGFFISTGLSTIPGQTGDWGIIAASL 62

Query: 162 VVAAIEWIGILMYRKPPPLLTRRLKSFIVMVNYWKAGVCLGLFVDAFKLGS 213
           +VAAIE +  ++Y        R     I ++N  K G+  GLFVDAFKLGS
Sbjct: 63  IVAAIELVSKIVYSNKKKYGVR-----INLLNNLKIGITYGLFVDAFKLGS 108

[Close]

BLAST of CsaV3_1G044300 vs. ExPASy Swiss-Prot
Match: P72983 (Ycf20-like protein OS=Synechocystis sp. (strain PCC 6803 / Kazusa) OX=1111708 GN=sll1509 PE=3 SV=1)

HSP 1 Score: 59.3 bits (142), Expect = 6.1e-08
Identity = 34/111 (30.63%), Postives = 55/111 (49.55%), Query Frame = 0


Query: 102 RTRLGRLVSSGARQLLEKLNSARKNFPTKIFLLLLGFYTANALATILGQTGDWDVLVAGV 161
           RTRL  +V    +QL +   +  +     +   L GF+   A+AT  GQ   WDV+ A  
Sbjct: 3   RTRLNTIVEVRGQQLSQFFRNPWRRISLSLLSFLFGFFVGTAVATTAGQNSQWDVVCAAF 62

Query: 162 VVAAIEWIGILMYRKPPPLLTRRLKSFIVMVNYWKAGVCLGLFVDAFKLGS 213
           ++   E +    YR+   +   + +    ++N +K GV   LF++AFKLGS
Sbjct: 63  ILLFCELVNRWFYRRGVKMGDLQAE----VLNIFKMGVSYSLFLEAFKLGS 109

[Close]

BLAST of CsaV3_1G044300 vs. ExPASy TrEMBL
Match: A0A0A0LXR2 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G652280 PE=3 SV=1)

HSP 1 Score: 421.8 bits (1083), Expect = 1.7e-114
Identity = 212/212 (100.00%), Postives = 212/212 (100.00%), Query Frame = 0


Query: 1   MEVGIFQMGAVILHSRLLTTANYSPQVSCLTNMPCLIHYWGYEAIFNGRSSSFLLKSAPF 60
           MEVGIFQMGAVILHSRLLTTANYSPQVSCLTNMPCLIHYWGYEAIFNGRSSSFLLKSAPF
Sbjct: 1   MEVGIFQMGAVILHSRLLTTANYSPQVSCLTNMPCLIHYWGYEAIFNGRSSSFLLKSAPF 60

Query: 61  PRKSLQTSRHVNKLAFALDTGGVSSSGGGDNIDDGDESNLGRTRLGRLVSSGARQLLEKL 120
           PRKSLQTSRHVNKLAFALDTGGVSSSGGGDNIDDGDESNLGRTRLGRLVSSGARQLLEKL
Sbjct: 61  PRKSLQTSRHVNKLAFALDTGGVSSSGGGDNIDDGDESNLGRTRLGRLVSSGARQLLEKL 120

Query: 121 NSARKNFPTKIFLLLLGFYTANALATILGQTGDWDVLVAGVVVAAIEWIGILMYRKPPPL 180
           NSARKNFPTKIFLLLLGFYTANALATILGQTGDWDVLVAGVVVAAIEWIGILMYRKPPPL
Sbjct: 121 NSARKNFPTKIFLLLLGFYTANALATILGQTGDWDVLVAGVVVAAIEWIGILMYRKPPPL 180

Query: 181 LTRRLKSFIVMVNYWKAGVCLGLFVDAFKLGS 213
           LTRRLKSFIVMVNYWKAGVCLGLFVDAFKLGS
Sbjct: 181 LTRRLKSFIVMVNYWKAGVCLGLFVDAFKLGS 212

[Close]

BLAST of CsaV3_1G044300 vs. ExPASy TrEMBL
Match: A0A6J1EGC6 (ycf20-like protein OS=Cucurbita moschata OX=3662 GN=LOC111432291 PE=3 SV=1)

HSP 1 Score: 343.2 bits (879), Expect = 7.8e-91
Identity = 172/205 (83.90%), Postives = 187/205 (91.22%), Query Frame = 0


Query: 8   MGAVILHSRLLTTANYSPQVSCLTNMPCLIHYWGYEAIFNGRSSSFLLKSAPFPRKSLQT 67
           M A+I+ SRLLT ANY  +  CLT MPCLIH  GY AI NG +S+  LKSAPFPRKS +T
Sbjct: 1   MEAMIMQSRLLTIANYISKGLCLTYMPCLIHNMGYVAILNGHNSTLCLKSAPFPRKSFRT 60

Query: 68  SRHVNKLAFALDTGGVSSSGGGDNIDDGDESNLGRTRLGRLVSSGARQLLEKLNSARKNF 127
           SRH+ +LAFALDTGGVSS+GGGDN+DDG+ESNLGRTRLGRLVS+GARQLLEKLNSARKNF
Sbjct: 61  SRHLQQLAFALDTGGVSSNGGGDNLDDGNESNLGRTRLGRLVSAGARQLLEKLNSARKNF 120

Query: 128 PTKIFLLLLGFYTANALATILGQTGDWDVLVAGVVVAAIEWIGILMYRKPPPLLTRRLKS 187
           PTKIFLLLLGFYTANALATILGQTGDWDVLVAGVVVAAIEWIGILMY+KPPPLLTRRLKS
Sbjct: 121 PTKIFLLLLGFYTANALATILGQTGDWDVLVAGVVVAAIEWIGILMYKKPPPLLTRRLKS 180

Query: 188 FIVMVNYWKAGVCLGLFVDAFKLGS 213
            IV++NYWKAGVCLGLFVDAFKLGS
Sbjct: 181 LIVLINYWKAGVCLGLFVDAFKLGS 205

[Close]

BLAST of CsaV3_1G044300 vs. ExPASy TrEMBL
Match: A0A6J1ICF7 (ycf20-like protein OS=Cucurbita maxima OX=3661 GN=LOC111471783 PE=3 SV=1)

HSP 1 Score: 340.5 bits (872), Expect = 5.1e-90
Identity = 171/205 (83.41%), Postives = 186/205 (90.73%), Query Frame = 0


Query: 8   MGAVILHSRLLTTANYSPQVSCLTNMPCLIHYWGYEAIFNGRSSSFLLKSAPFPRKSLQT 67
           M A+I+ SRLLT ANY  +  CLT MPCLIH   Y AI NG +S+  LKSAPFPRKS +T
Sbjct: 1   MEAMIMQSRLLTIANYISKGLCLTYMPCLIHNMDYVAILNGHNSTLCLKSAPFPRKSFRT 60

Query: 68  SRHVNKLAFALDTGGVSSSGGGDNIDDGDESNLGRTRLGRLVSSGARQLLEKLNSARKNF 127
           SRH+ +LAFALDTGGVSS+GGGDN+DDG+ESNLGRTRLGRLVS+GARQLLEKLNSARKNF
Sbjct: 61  SRHLQQLAFALDTGGVSSNGGGDNLDDGNESNLGRTRLGRLVSAGARQLLEKLNSARKNF 120

Query: 128 PTKIFLLLLGFYTANALATILGQTGDWDVLVAGVVVAAIEWIGILMYRKPPPLLTRRLKS 187
           PTKIFLLLLGFYTANALATILGQTGDWDVLVAGVVVAAIEWIGILMY+KPPPLLTRRLKS
Sbjct: 121 PTKIFLLLLGFYTANALATILGQTGDWDVLVAGVVVAAIEWIGILMYKKPPPLLTRRLKS 180

Query: 188 FIVMVNYWKAGVCLGLFVDAFKLGS 213
            IV++NYWKAGVCLGLFVDAFKLGS
Sbjct: 181 LIVLINYWKAGVCLGLFVDAFKLGS 205

[Close]

BLAST of CsaV3_1G044300 vs. ExPASy TrEMBL
Match: A0A6J1D763 (ycf20-like protein OS=Momordica charantia OX=3673 GN=LOC111018246 PE=3 SV=1)

HSP 1 Score: 324.7 bits (831), Expect = 2.9e-85
Identity = 167/207 (80.68%), Postives = 183/207 (88.41%), Query Frame = 0


Query: 8   MGAVILHSRLLTTANYSPQVSCLTNMPCLIHYWGYEAIFNGRSSSFLLKSAPFPRKSLQT 67
           MGA+IL SRLL   +YS + SCLTN+ CL++YWGY A+FN ++S+  LKSAPFPR+S QT
Sbjct: 6   MGAMILQSRLLKIESYSSRGSCLTNISCLVYYWGYAAVFNAQNSTRCLKSAPFPRRSFQT 65

Query: 68  SRHV--NKLAFALDTGGVSSSGGGDNIDDGDESNLGRTRLGRLVSSGARQLLEKLNSARK 127
           SRH+   KLAFALDT G+  +GG DN  DGDESNLGRTRLGRLVSS ARQLLEKLNSARK
Sbjct: 66  SRHLRKRKLAFALDTSGLPRNGGEDN-PDGDESNLGRTRLGRLVSSAARQLLEKLNSARK 125

Query: 128 NFPTKIFLLLLGFYTANALATILGQTGDWDVLVAGVVVAAIEWIGILMYRKPPPLLTRRL 187
           NFP KIFLLLLGFYTANALATILGQTGDWDVLVAGVVVAAIE IG+LMYRKPPPLLTRRL
Sbjct: 126 NFPMKIFLLLLGFYTANALATILGQTGDWDVLVAGVVVAAIEGIGVLMYRKPPPLLTRRL 185

Query: 188 KSFIVMVNYWKAGVCLGLFVDAFKLGS 213
           KSFIVM+NYWKAGVCLGLFVDAFKLGS
Sbjct: 186 KSFIVMINYWKAGVCLGLFVDAFKLGS 211

[Close]

BLAST of CsaV3_1G044300 vs. ExPASy TrEMBL
Match: A0A5A7T5T0 (Ycf20-like protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold84664G00190 PE=3 SV=1)

HSP 1 Score: 289.7 bits (740), Expect = 1.0e-74
Identity = 146/149 (97.99%), Postives = 148/149 (99.33%), Query Frame = 0


Query: 64  SLQTSRHVNKLAFALDTGGVSSSGGGDNIDDGDESNLGRTRLGRLVSSGARQLLEKLNSA 123
           S QTSRHVNK+AFALDTGGVSSSGGGDN+DDGDESNLGRTRLGRLVSSGARQLLEKLNSA
Sbjct: 21  SFQTSRHVNKIAFALDTGGVSSSGGGDNVDDGDESNLGRTRLGRLVSSGARQLLEKLNSA 80

Query: 124 RKNFPTKIFLLLLGFYTANALATILGQTGDWDVLVAGVVVAAIEWIGILMYRKPPPLLTR 183
           RKNFPTKIFLLLLGFYTANALATILGQTGDWDVLVAGVVVAAIEWIGILMYRKPPPLLTR
Sbjct: 81  RKNFPTKIFLLLLGFYTANALATILGQTGDWDVLVAGVVVAAIEWIGILMYRKPPPLLTR 140

Query: 184 RLKSFIVMVNYWKAGVCLGLFVDAFKLGS 213
           RLKSFIVMVNYWKAGVCLGLFVDAFKLGS
Sbjct: 141 RLKSFIVMVNYWKAGVCLGLFVDAFKLGS 169

[Close]

BLAST of CsaV3_1G044300 vs. TAIR 10
Match: AT1G65420.1 (Protein of unknown function (DUF565) )

HSP 1 Score: 206.5 bits (524), Expect = 2.2e-53
Identity = 108/166 (65.06%), Postives = 130/166 (78.31%), Query Frame = 0


Query: 49  RSSSFLLKSAPFPRKSLQTSRHVNKLAFALDTGGVSSSGGGDNID-DGDESNLGRTRLGR 108
           ++SS  L S P+P KS Q  R   K+AFALDTG       G+  + +GD + LG TRLGR
Sbjct: 32  KASSITLTSFPYPMKSFQIRRPNRKIAFALDTGSSIPGDSGEGQEMNGDRTGLGSTRLGR 91

Query: 109 LVSSGARQLLEKLNSARKNFPTKIFLLLLGFYTANALATILGQTGDWDVLVAGVVVAAIE 168
           +  +G +QLL K+NSARKNFP KIFLLLLGFYTANALATILGQTGDWDVLVAG+VVAAIE
Sbjct: 92  IAIAGGKQLLGKINSARKNFPMKIFLLLLGFYTANALATILGQTGDWDVLVAGIVVAAIE 151

Query: 169 WIGILMYRKP-PPLLTRRLKSFIVMVNYWKAGVCLGLFVDAFKLGS 213
            IG+LMY+KP   + + +L+SF+V +N+WKAGVCLGLFVDAFKLGS
Sbjct: 152 GIGMLMYKKPSSSMFSGKLQSFVVFMNFWKAGVCLGLFVDAFKLGS 197

[Close]

BLAST of CsaV3_1G044300 vs. TAIR 10
Match: AT3G56830.1 (Protein of unknown function (DUF565) )

HSP 1 Score: 114.0 bits (284), Expect = 1.5e-25
Identity = 62/145 (42.76%), Postives = 89/145 (61.38%), Query Frame = 0


Query: 69  RHVNKLAFALDTGGVSSSGGGDNIDDGDESNLGRT----RLGRLVSSGARQLLEKLNSAR 128
           RH  ++++      + SS GGD  D    S+   +    RL + +     +LL K+   +
Sbjct: 48  RHQRRMSWTT----IKSSVGGDRFDPASGSSSNNSSRGLRLIKAIQVLRSKLLVKIQEIK 107

Query: 129 KNFPTKIFLLLLGFYTANALATILGQTGDWDVLVAGVVVAAIEWIGILMYRKPPPLLTRR 188
           K+ P K+F LL+GFY+A A +T +GQTGDWDVL AG+ V  +E IG LMYR   PL+  +
Sbjct: 108 KDLPKKLFFLLVGFYSATAFSTFIGQTGDWDVLSAGLAVLVVECIGALMYRASIPLI-NK 167

Query: 189 LKSFIVMVNYWKAGVCLGLFVDAFK 210
           ++S I M NYWK G+ LGLF+D+FK
Sbjct: 168 MRSTITMFNYWKTGLALGLFLDSFK 187

[Close]

BLAST of CsaV3_1G044300 vs. TAIR 10
Match: AT3G56830.2 (Protein of unknown function (DUF565) )

HSP 1 Score: 114.0 bits (284), Expect = 1.5e-25
Identity = 62/145 (42.76%), Postives = 89/145 (61.38%), Query Frame = 0


Query: 69  RHVNKLAFALDTGGVSSSGGGDNIDDGDESNLGRT----RLGRLVSSGARQLLEKLNSAR 128
           RH  ++++      + SS GGD  D    S+   +    RL + +     +LL K+   +
Sbjct: 48  RHQRRMSWTT----IKSSVGGDRFDPASGSSSNNSSRGLRLIKAIQVLRSKLLVKIQEIK 107

Query: 129 KNFPTKIFLLLLGFYTANALATILGQTGDWDVLVAGVVVAAIEWIGILMYRKPPPLLTRR 188
           K+ P K+F LL+GFY+A A +T +GQTGDWDVL AG+ V  +E IG LMYR   PL+  +
Sbjct: 108 KDLPKKLFFLLVGFYSATAFSTFIGQTGDWDVLSAGLAVLVVECIGALMYRASIPLI-NK 167

Query: 189 LKSFIVMVNYWKAGVCLGLFVDAFK 210
           ++S I M NYWK G+ LGLF+D+FK
Sbjct: 168 MRSTITMFNYWKTGLALGLFLDSFK 187

[Close]

BLAST of CsaV3_1G044300 vs. TAIR 10
Match: AT3G56830.3 (Protein of unknown function (DUF565) )

HSP 1 Score: 114.0 bits (284), Expect = 1.5e-25
Identity = 62/145 (42.76%), Postives = 89/145 (61.38%), Query Frame = 0


Query: 69  RHVNKLAFALDTGGVSSSGGGDNIDDGDESNLGRT----RLGRLVSSGARQLLEKLNSAR 128
           RH  ++++      + SS GGD  D    S+   +    RL + +     +LL K+   +
Sbjct: 48  RHQRRMSWTT----IKSSVGGDRFDPASGSSSNNSSRGLRLIKAIQVLRSKLLVKIQEIK 107

Query: 129 KNFPTKIFLLLLGFYTANALATILGQTGDWDVLVAGVVVAAIEWIGILMYRKPPPLLTRR 188
           K+ P K+F LL+GFY+A A +T +GQTGDWDVL AG+ V  +E IG LMYR   PL+  +
Sbjct: 108 KDLPKKLFFLLVGFYSATAFSTFIGQTGDWDVLSAGLAVLVVECIGALMYRASIPLI-NK 167

Query: 189 LKSFIVMVNYWKAGVCLGLFVDAFK 210
           ++S I M NYWK G+ LGLF+D+FK
Sbjct: 168 MRSTITMFNYWKTGLALGLFLDSFK 187

[Close]

BLAST of CsaV3_1G044300 vs. TAIR 10
Match: AT5G43050.1 (Protein of unknown function (DUF565) )

HSP 1 Score: 42.7 bits (99), Expect = 4.2e-04
Identity = 29/80 (36.25%), Postives = 41/80 (51.25%), Query Frame = 0


Query: 134 LLLGFYTANALATILGQTGDWDVLVAGVVVAAIEWIGILMYRKPPPLLTRRLKSF-IVMV 193
           LL GFY A  ++   G  G  DV+ A + V   E++    Y       +R   +F I ++
Sbjct: 86  LLGGFYVAQTISLSFGALGVNDVIAAVLCVLLTEYVTRFYY-------SRTTVTFPIALL 145

Query: 194 NYWKAGVCLGLFVDAFKLGS 213
           N +K G   GLF+DAFKL S
Sbjct: 146 NNFKMGFTYGLFIDAFKLAS 158

The following BLAST results are available for this feature:

BLAST of CsaV3_1G044300 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_011660206.1	3.6e-114	100.00	ycf20-like protein [Cucumis sativus] >XP_011660207.1 ycf20-like protein [Cucumis...	[more]
XP_038878602.1	3.6e-98	87.74	ycf20-like protein [Benincasa hispida] >XP_038878603.1 ycf20-like protein [Benin...	[more]
XP_022924878.1	1.6e-90	83.90	ycf20-like protein [Cucurbita moschata] >XP_022924885.1 ycf20-like protein [Cucu...	[more]
XP_023520636.1	4.7e-90	83.41	ycf20-like protein [Cucurbita pepo subsp. pepo] >XP_023520637.1 ycf20-like prote...	[more]
XP_022973215.1	1.0e-89	83.41	ycf20-like protein [Cucurbita maxima] >XP_022973224.1 ycf20-like protein [Cucurb...	[more]

BLAST of CsaV3_1G044300 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
O80813	3.1e-52	65.06	Ycf20-like protein OS=Arabidopsis thaliana OX=3702 GN=At1g65420 PE=2 SV=2	[more]
Q9MUL5	7.7e-19	48.31	Uncharacterized protein ycf20 OS=Mesostigma viride OX=41882 GN=ycf20 PE=3 SV=1	[more]
Q1XDS2	1.8e-12	38.74	Uncharacterized protein ycf20 OS=Pyropia yezoensis OX=2788 GN=ycf20 PE=3 SV=1	[more]
P51214	2.4e-12	38.74	Uncharacterized protein ycf20 OS=Porphyra purpurea OX=2787 GN=ycf20 PE=3 SV=1	[more]
P72983	6.1e-08	30.63	Ycf20-like protein OS=Synechocystis sp. (strain PCC 6803 / Kazusa) OX=1111708 GN...	[more]

BLAST of CsaV3_1G044300 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0LXR2	1.7e-114	100.00	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G652280 PE=3 SV=1	[more]
A0A6J1EGC6	7.8e-91	83.90	ycf20-like protein OS=Cucurbita moschata OX=3662 GN=LOC111432291 PE=3 SV=1	[more]
A0A6J1ICF7	5.1e-90	83.41	ycf20-like protein OS=Cucurbita maxima OX=3661 GN=LOC111471783 PE=3 SV=1	[more]
A0A6J1D763	2.9e-85	80.68	ycf20-like protein OS=Momordica charantia OX=3673 GN=LOC111018246 PE=3 SV=1	[more]
A0A5A7T5T0	1.0e-74	97.99	Ycf20-like protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold84664...	[more]

BLAST of CsaV3_1G044300 vs. TAIR 10


Match Name	E-value	Identity	Description
AT1G65420.1	2.2e-53	65.06	Protein of unknown function (DUF565)	[more]
AT3G56830.1	1.5e-25	42.76	Protein of unknown function (DUF565)	[more]
AT3G56830.2	1.5e-25	42.76	Protein of unknown function (DUF565)	[more]
AT3G56830.3	1.5e-25	42.76	Protein of unknown function (DUF565)	[more]
AT5G43050.1	4.2e-04	36.25	Protein of unknown function (DUF565)	[more]

InterPro

Analysis Name: InterPro Annotations of Cucumber (Chinese Long) v3
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR007572	Uncharacterised protein family Ycf20	PFAM	PF04483	DUF565	coord: 150..212 e-value: 1.3E-21 score: 76.8
IPR007572	Uncharacterised protein family Ycf20	PANTHER	PTHR33787	FAMILY NOT NAMED	coord: 20..212
None	No IPR available	PANTHER	PTHR33787:SF4	YCF20-LIKE PROTEIN	coord: 20..212

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CsaV3_1G044300.1	CsaV3_1G044300.1	mRNA