CsaV3_1G043410 (gene) Cucumber (Chinese Long) v3

Overview


Name	CsaV3_1G043410
Type	gene
Organism	Cucumis sativus L. var. sativus cv. Chinese Long (Cucumber (Chinese Long) v3)
Description	Unknown protein
Location	chr1: 28391302 .. 28391498 (+)
RNA-Seq Expression	CsaV3_1G043410
Synteny	CsaV3_1G043410

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

AAATTCCGAAAGCGATCTCTCATGGAATTGAAGCAATGCGTGGGAACTCCAGGGTGAGGGCGATGATGGATTATTTGTGTGTTTGGGCAGGGTGTGATTTCCCACAGAAAGAGAGCAGGGTGGCGCGAATGACTAAGCCATGGTCTAAACAAGTGGTCGGCACGAGGCGTGAGCAAGGCGGTAGGCGTCAACGGTGA

mRNA sequence

ATTCCGAAAGCGATCTCTCATGGAATTGAAGCAATGCGTGGGAACTCCAGGGTGAGGGCGATGATGGATTATTTGTGTGTTTGGGCAGGGTGTGATTTCCCACAGAAAGAGAGCAGGGTGGCGCGAATGACTAAGCCATGGTCTAAACAAGTGGTCGGCACGAGGCGTGAGCAAGGCGGTAGGCGTCAACGGTG

Coding sequence (CDS)

ATTCCGAAAGCGATCTCTCATGGAATTGAAGCAATGCGTGGGAACTCCAGGGTGAGGGCGATGATGGATTATTTGTGTGTTTGGGCAGGGTGTGATTTCCCACAGAAAGAGAGCAGGGTGGCGCGAATGACTAAGCCATGGTCTAAACAAGTGGTCGGCACGAGGCGTGAGCAAGGCGGTAGGCGTCAACGGTG

Protein sequence

IPKAISHGIEAMRGNSRVRAMMDYLCVWAGCDFPQKESRVARMTKPWSKQVVGTRREQGGRRQRX

Homology

[Close]

BLAST of CsaV3_1G043410 vs. NCBI nr
Match: KAE8653530.1 (hypothetical protein Csa_023630, partial [Cucumis sativus])

HSP 1 Score: 136.0 bits (341), Expect = 1.2e-28
Identity = 64/64 (100.00%), Postives = 64/64 (100.00%), Query Frame = 0


Query: 1  IPKAISHGIEAMRGNSRVRAMMDYLCVWAGCDFPQKESRVARMTKPWSKQVVGTRREQGG 60
          IPKAISHGIEAMRGNSRVRAMMDYLCVWAGCDFPQKESRVARMTKPWSKQVVGTRREQGG
Sbjct: 1  IPKAISHGIEAMRGNSRVRAMMDYLCVWAGCDFPQKESRVARMTKPWSKQVVGTRREQGG 60

Query: 61 RRQR 65
          RRQR
Sbjct: 61 RRQR 64

[Close]

BLAST of CsaV3_1G043410 vs. ExPASy TrEMBL
Match: A0A0A0M2X5 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G629030 PE=4 SV=1)

HSP 1 Score: 136.0 bits (341), Expect = 5.8e-29
Identity = 64/64 (100.00%), Postives = 64/64 (100.00%), Query Frame = 0


Query: 1  IPKAISHGIEAMRGNSRVRAMMDYLCVWAGCDFPQKESRVARMTKPWSKQVVGTRREQGG 60
          IPKAISHGIEAMRGNSRVRAMMDYLCVWAGCDFPQKESRVARMTKPWSKQVVGTRREQGG
Sbjct: 8  IPKAISHGIEAMRGNSRVRAMMDYLCVWAGCDFPQKESRVARMTKPWSKQVVGTRREQGG 67

Query: 61 RRQR 65
          RRQR
Sbjct: 68 RRQR 71

The following BLAST results are available for this feature:

BLAST of CsaV3_1G043410 vs. NCBI nr


Match Name	E-value	Identity	Description
KAE8653530.1	1.2e-28	100.00	hypothetical protein Csa_023630, partial [Cucumis sativus]	[more]

BLAST of CsaV3_1G043410 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of CsaV3_1G043410 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0M2X5	5.8e-29	100.00	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G629030 PE=4 SV=1	[more]

BLAST of CsaV3_1G043410 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Cucumber (Chinese Long) v3
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 44..64

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CsaV3_1G043410.1	CsaV3_1G043410.1	mRNA