CsaV3_1G042300 (gene) Cucumber (Chinese Long) v3

Overview


Name	CsaV3_1G042300
Type	gene
Organism	Cucumis sativus L. var. sativus cv. Chinese Long (Cucumber (Chinese Long) v3)
Description	Ribosome biogenesis regulatory protein
Location	chr1: 27242323 .. 27246078 (+)
RNA-Seq Expression	CsaV3_1G042300
Synteny	CsaV3_1G042300

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

TTATTTTTGACCTTGGTTTCTCCATTTTAGAAATTTATCCTTCTTTGTTAAATAGGATAGATAGATATCCTTTTTTAACCGGTTATAATACGAAAGAAAAACTGAGGTTTTAGGGTTTCCAATTTCATTATAGAGAACCTCTGTCGTCGGCAACCCAGGTGGTCGGAGCATGGAGATCGAAAATCAGCATCCGTTTCAGATTGACCTTGGTCATCTAATGGCATTCAATCCCCACCATCAGTTTCCTTCACTTCCCTCCTCCAGGTTAGTTCTTCTTCTTCGTGTTTGGACCCCTGATCCTTCTTGGCAACTTGCAATTTTCTCCCCTTTTTTTGAACTTCATTCCTTAGTAGGAAGATGAAAAACAGTTGTTTGTAGCGATTTCTCTTTTCTGAATTTCTCATGTTCTGTCTGTCTCAATGAGGTCGAAGAGCACTTGTGTGCTGTATTTTGGCTTTGAGATATTATACTATGCACATTCCCTTGTAGTGTTTCTGAACTTTGGTGGTGAAGATCATCCGGGTGTCTGAGTTTTTCCAACTATGGTAGGTATAGACTTTGGGCTGATGACCGTGAATAAACCCTAAACCCTAAACCCATGTCTACATTGGCAACTTCCAAATGTTTCATTCTTGTCAATCAATCCAATTAGAAATATATCTAACTTTTGATTCCTTAGATTTCGTCTGTGTTTGGTTTAGCTCTTGAAGTCTTTTATTTTGAAAATAAGTCGTTTTGGAAAGAAATGGATTGTTTTACATCACTCAAAGTAGCTAATTTTTCGAAATTTAATCGAAATAGGTTTTATCTGAAGAGTTCAATGTTTAACTTTAGGGTATCTTATTGCTTGTTTTGTTTGAAGAGGATCTCTATTATCTTTGCTTAGTTTTAGTTATCTATTTCTTCAATTTGATTACTAGGGAGGATCTAGTCAGTGAATGTCTGCAAAAGGGAACAGAGTTAGTTCAATCTATTGCCAATGATCTTTTCAACCTGCCTTCAACTGAAGACAGAGACGGCCCCCTTGTGAGGTTGCCTCCACCTACCACAAGATTGCCGAGAGAGAAACCCGTAAGACCTCATGCGACTCTATTGTCTCATTTACTTCTCTTTCAATCTATATGATCTCTCTACTTGGTAACAACTGTCGTTGATTGTACTCTATCCATAAACAGTGGCTGCAAATATTAGTTCTATAGTTTCTGGCTGAGGTGATCTTTTCTTCTTTTTTTTCCAGCTTCCGAAGCCGAAACCTCCTACAAAATGGGAACTTTTTGCCCAAAAAAAAGGTCAGTTGTTTGGTACGCAGCCTATGCTAGGGTATATTTGACAGAGCAATAGCACTTTCCCTCCCCTACGAAAAAAAGGGAAAAAAACAACTGAAAGAAGAAATAGCATTACTAACTTAGTTAATTTGATAACTATCTATTTTTCGCTTATAATTATATTGTTTCAAAAATAATTTTGCAGGCATAAAAAACCGTAAAAAAGATAAGAGAGTGTACGATGAACAGACACATACATGGAAACGTCGCCATGGTTATGATCGTGCAAATGACGAGGATAACATTCCCATAATTGAGGCCAAGATGACTGACGGTAGGGTTCTTTTTTATTATATTTTTATTAAATTAATCGTTCTACTGGTTATTCTATTTTTGTTTTCTTTTGCAAATTGATTTGCAAAATTGCACTCAGTTGGACAATTCGGATAATAAACTGATTATTCTCTTTCATTACTGGCTGCACTTTCTGACTATGATGCATTAAAAGTGCCTAAGTGGCTGTCATATATCACGTTTGATTTGTCTTGCAGAGTCTGGGGAGGATCCATTTGCTGCAAGGCGAGCCGATAAGAAAAAACGAGTTGAAAAGCAAGAAAAGAATCGATTACAAAATCTGAAGCAAGCTGCAAAAGTTGGCGCTCTACCTAGGTTTACCTCTTATGACGTTTTTTTCCCAACCTCAGTTTATAATACACGAGTTTCATTAAAATTTGTGGCTTGATAAATGTTTTGGCCAACTATTAGATTTGAGACATTTTCCATGTTTTTCTCATGTTTTGCATTATGGTGTTCATCTTCATTCATGTCTTCCTTTCCTCTTCATACAATCTATTCTTGATGGTCTAAAACTCACTGTTTCAGCCACATCCAACTAGCTGCTACTGCTTTGCCTATAACGGGAACTCAGGCTGCACCTAAGAAAATTACTAAAGATGAGCTTGGAAATGTAGCTGGAATGGCAGCAACTTCAACAGCCAGTGGTGGAAAATTCGACAAGAAGTTTGCAGGAGAAAAACCTGCAAAACATCAAGGAAAATATCGCAAGGTTAGTAGAATAAGCCTGTTGATCTGCGTTTAAGCTACTTTATGGGCTTGTCTGGAATAACTTTCTAATTTTTTATATGTTTTTTTTATTCATAAACACTTATTTAAATTCTTAGAAAGTCAATCAAAACACGCTCTTATATTTCTCGTAAAAGGTCGTGATTCTTTTTTTGTGTTTGCATATAGTTTCTGCCTGTTGTGGAGGGAACAGGGATAGGATCTCGAGAAAGAGAGCAAACTGAGAAAGTTCTTAGCAGATTAATTTCCAAGAATTCACATGAGATTCTCAACGTTAATAAGGTTTGACTGCTGAACTCCATATCTCTACTTATTAAAAATGATAAATAGATGCATATATTTTATTGTTTTATGCAATGCAACTCCTATGGTTTTGAATCTATCGATCTTTTGTACTGGGATGGCATGATGCCGAGCATAAAATCATACCTCTTTTTGTTACATGGTCTTAATTGGAATAAGTAAATGCCATGCTACTTTTTTTTTCTTTTATAAAATTTTTATATTACATTATTTATTTACATGGTTGCAAATGGATCTTGTGATGAATATTCATGTATGATTTATCCTGCAAGCATCAACGATTAGTCTTATCAGATTAGAGAAGAAGGGATTTTTTAATCACATTAAATTGTTAGTTTTTTGGAATTATTTTTATTTAGCACAGTGAGGGAATGAAGATTTGAGTCTCTAGATTCTCTACTTGTCGATTACCATTGAGCTGTGCATTTTGGCGTTTTGGGAATTACATATCTCTCAGCTTATTTTGGTCTTATTTTCAGACTGTCAACATGTTCAATTATTTGTTTGTTCGTCTATTTTCATGCGAGTACCAACAATTAAGACGGCTTTTGGAATTATGTATCTTTAAGCTTATTTTGGATTCCTCATCTTTATTTTCAGGCTGTCAACATGTATAATGTTAAAAAAGAAAAGAAACAAAGAAACCAAGGAAAATCTTCATCGATGTCGAGCAAGTTGAAGCCAAATAAGAAACTTCAGAAGAAGCCTTTGAAGAAAGGATCTTCAAAGCAAGGAAAGGCGAAATGATCAGATTAAATTCTGGTTTAAGTTTTGAATGGATATGTACCATCATTATTTAGTCTTAGTAGTGAAGGAATGTGAGTTATTTAAATGTGTTCTTTTTCCCCAACTCATCTCTCTCATGATAAAAAGCAATTTTGTAATAGTTCATTTCAGTTGTGAATTTACTCAAAGCTAATTTATTTCCATTTTGCCCTTTCTGTTCTTTTTTCATCTTCAGTTTCTATATATATTATGAATCCTTTGTTAAATTAGTTATTGTTAATTTTTTAATTCTTAAAATTTTATTTTAAAGTTTATATTAGTTTCTACGAGGATTGTTCTGGGGACTTTTGTTGTATAAAAATGATTTGAATATGCTTTG

mRNA sequence

ATGGAGATCGAAAATCAGCATCCGTTTCAGATTGACCTTGGTCATCTAATGGCATTCAATCCCCACCATCAGTTTCCTTCACTTCCCTCCTCCAGGGAGGATCTAGTCAGTGAATGTCTGCAAAAGGGAACAGAGTTAGTTCAATCTATTGCCAATGATCTTTTCAACCTGCCTTCAACTGAAGACAGAGACGGCCCCCTTGTGAGGTTGCCTCCACCTACCACAAGATTGCCGAGAGAGAAACCCCTTCCGAAGCCGAAACCTCCTACAAAATGGGAACTTTTTGCCCAAAAAAAAGGCATAAAAAACCGTAAAAAAGATAAGAGAGTGTACGATGAACAGACACATACATGGAAACGTCGCCATGGTTATGATCGTGCAAATGACGAGGATAACATTCCCATAATTGAGGCCAAGATGACTGACGAGTCTGGGGAGGATCCATTTGCTGCAAGGCGAGCCGATAAGAAAAAACGAGTTGAAAAGCAAGAAAAGAATCGATTACAAAATCTGAAGCAAGCTGCAAAAGTTGGCGCTCTACCTAGCCACATCCAACTAGCTGCTACTGCTTTGCCTATAACGGGAACTCAGGCTGCACCTAAGAAAATTACTAAAGATGAGCTTGGAAATGTAGCTGGAATGGCAGCAACTTCAACAGCCAGTGGTGGAAAATTCGACAAGAAGTTTGCAGGAGAAAAACCTGCAAAACATCAAGGAAAATATCGCAAGTTTCTGCCTGTTGTGGAGGGAACAGGGATAGGATCTCGAGAAAGAGAGCAAACTGAGAAAGTTCTTAGCAGATTAATTTCCAAGAATTCACATGAGATTCTCAACGTTAATAAGGCTGTCAACATGTATAATGTTAAAAAAGAAAAGAAACAAAGAAACCAAGGAAAATCTTCATCGATGTCGAGCAAGTTGAAGCCAAATAAGAAACTTCAGAAGAAGCCTTTGAAGAAAGGATCTTCAAAGCAAGGAAAGGCGAAATGA

Coding sequence (CDS)

ATGGAGATCGAAAATCAGCATCCGTTTCAGATTGACCTTGGTCATCTAATGGCATTCAATCCCCACCATCAGTTTCCTTCACTTCCCTCCTCCAGGGAGGATCTAGTCAGTGAATGTCTGCAAAAGGGAACAGAGTTAGTTCAATCTATTGCCAATGATCTTTTCAACCTGCCTTCAACTGAAGACAGAGACGGCCCCCTTGTGAGGTTGCCTCCACCTACCACAAGATTGCCGAGAGAGAAACCCCTTCCGAAGCCGAAACCTCCTACAAAATGGGAACTTTTTGCCCAAAAAAAAGGCATAAAAAACCGTAAAAAAGATAAGAGAGTGTACGATGAACAGACACATACATGGAAACGTCGCCATGGTTATGATCGTGCAAATGACGAGGATAACATTCCCATAATTGAGGCCAAGATGACTGACGAGTCTGGGGAGGATCCATTTGCTGCAAGGCGAGCCGATAAGAAAAAACGAGTTGAAAAGCAAGAAAAGAATCGATTACAAAATCTGAAGCAAGCTGCAAAAGTTGGCGCTCTACCTAGCCACATCCAACTAGCTGCTACTGCTTTGCCTATAACGGGAACTCAGGCTGCACCTAAGAAAATTACTAAAGATGAGCTTGGAAATGTAGCTGGAATGGCAGCAACTTCAACAGCCAGTGGTGGAAAATTCGACAAGAAGTTTGCAGGAGAAAAACCTGCAAAACATCAAGGAAAATATCGCAAGTTTCTGCCTGTTGTGGAGGGAACAGGGATAGGATCTCGAGAAAGAGAGCAAACTGAGAAAGTTCTTAGCAGATTAATTTCCAAGAATTCACATGAGATTCTCAACGTTAATAAGGCTGTCAACATGTATAATGTTAAAAAAGAAAAGAAACAAAGAAACCAAGGAAAATCTTCATCGATGTCGAGCAAGTTGAAGCCAAATAAGAAACTTCAGAAGAAGCCTTTGAAGAAAGGATCTTCAAAGCAAGGAAAGGCGAAATGA

Protein sequence

MEIENQHPFQIDLGHLMAFNPHHQFPSLPSSREDLVSECLQKGTELVQSIANDLFNLPSTEDRDGPLVRLPPPTTRLPREKPLPKPKPPTKWELFAQKKGIKNRKKDKRVYDEQTHTWKRRHGYDRANDEDNIPIIEAKMTDESGEDPFAARRADKKKRVEKQEKNRLQNLKQAAKVGALPSHIQLAATALPITGTQAAPKKITKDELGNVAGMAATSTASGGKFDKKFAGEKPAKHQGKYRKFLPVVEGTGIGSREREQTEKVLSRLISKNSHEILNVNKAVNMYNVKKEKKQRNQGKSSSMSSKLKPNKKLQKKPLKKGSSKQGKAK*

Homology

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BLAST of CsaV3_1G042300 vs. NCBI nr
Match: XP_004149022.1 (ribosome biogenesis regulatory protein homolog [Cucumis sativus] >KGN66432.1 hypothetical protein Csa_007676 [Cucumis sativus])

HSP 1 Score: 626.7 bits (1615), Expect = 1.1e-175
Identity = 329/329 (100.00%), Postives = 329/329 (100.00%), Query Frame = 0


Query: 1   MEIENQHPFQIDLGHLMAFNPHHQFPSLPSSREDLVSECLQKGTELVQSIANDLFNLPST 60
           MEIENQHPFQIDLGHLMAFNPHHQFPSLPSSREDLVSECLQKGTELVQSIANDLFNLPST
Sbjct: 1   MEIENQHPFQIDLGHLMAFNPHHQFPSLPSSREDLVSECLQKGTELVQSIANDLFNLPST 60

Query: 61  EDRDGPLVRLPPPTTRLPREKPLPKPKPPTKWELFAQKKGIKNRKKDKRVYDEQTHTWKR 120
           EDRDGPLVRLPPPTTRLPREKPLPKPKPPTKWELFAQKKGIKNRKKDKRVYDEQTHTWKR
Sbjct: 61  EDRDGPLVRLPPPTTRLPREKPLPKPKPPTKWELFAQKKGIKNRKKDKRVYDEQTHTWKR 120

Query: 121 RHGYDRANDEDNIPIIEAKMTDESGEDPFAARRADKKKRVEKQEKNRLQNLKQAAKVGAL 180
           RHGYDRANDEDNIPIIEAKMTDESGEDPFAARRADKKKRVEKQEKNRLQNLKQAAKVGAL
Sbjct: 121 RHGYDRANDEDNIPIIEAKMTDESGEDPFAARRADKKKRVEKQEKNRLQNLKQAAKVGAL 180

Query: 181 PSHIQLAATALPITGTQAAPKKITKDELGNVAGMAATSTASGGKFDKKFAGEKPAKHQGK 240
           PSHIQLAATALPITGTQAAPKKITKDELGNVAGMAATSTASGGKFDKKFAGEKPAKHQGK
Sbjct: 181 PSHIQLAATALPITGTQAAPKKITKDELGNVAGMAATSTASGGKFDKKFAGEKPAKHQGK 240

Query: 241 YRKFLPVVEGTGIGSREREQTEKVLSRLISKNSHEILNVNKAVNMYNVKKEKKQRNQGKS 300
           YRKFLPVVEGTGIGSREREQTEKVLSRLISKNSHEILNVNKAVNMYNVKKEKKQRNQGKS
Sbjct: 241 YRKFLPVVEGTGIGSREREQTEKVLSRLISKNSHEILNVNKAVNMYNVKKEKKQRNQGKS 300

Query: 301 SSMSSKLKPNKKLQKKPLKKGSSKQGKAK 330
           SSMSSKLKPNKKLQKKPLKKGSSKQGKAK
Sbjct: 301 SSMSSKLKPNKKLQKKPLKKGSSKQGKAK 329

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BLAST of CsaV3_1G042300 vs. NCBI nr
Match: KAA0042254.1 (ribosome biogenesis regulatory protein-like protein [Cucumis melo var. makuwa])

HSP 1 Score: 607.1 bits (1564), Expect = 9.3e-170
Identity = 321/330 (97.27%), Postives = 324/330 (98.18%), Query Frame = 0


Query: 1   MEIENQHPFQIDLGHLMAFNPHHQFPSLPSSREDLVSECLQKGTELVQSIANDLFNLPST 60
           MEIENQHPFQIDLGHLMAFNPHHQFPS+P SRE+L+SECLQKGTELVQSIANDLFNLPST
Sbjct: 1   MEIENQHPFQIDLGHLMAFNPHHQFPSIPPSREELISECLQKGTELVQSIANDLFNLPST 60

Query: 61  EDRDGPLVRLPPPTTRLPREKPLPKPKPPTKWELFAQKKGIKNRKKDKRVYDEQTHTWKR 120
           EDRDGPLVRLPPPTTRLPREKPLPKPKPPTKWELFA KKGIK RKKDKRVYDEQTHTWKR
Sbjct: 61  EDRDGPLVRLPPPTTRLPREKPLPKPKPPTKWELFALKKGIKKRKKDKRVYDEQTHTWKR 120

Query: 121 RHGYDRANDEDNIPIIEAKMTDESGEDPFAARRADKKKRVEKQEKNRLQNLKQAAKVGAL 180
           RHGYDRANDEDNIPIIEAKMTDESGEDPFAARRADKKKRVEKQEKNRLQNLKQAAKVGAL
Sbjct: 121 RHGYDRANDEDNIPIIEAKMTDESGEDPFAARRADKKKRVEKQEKNRLQNLKQAAKVGAL 180

Query: 181 PSHIQLAATALPITGTQAAPKKITKDELGNVAGMAATSTASGGKFDKKFAGEKPAKHQGK 240
           PSHIQLAATALPITGTQAAPKKITKDELGNVAGMAATSTASGGKFDKKFAGEKPAKHQGK
Sbjct: 181 PSHIQLAATALPITGTQAAPKKITKDELGNVAGMAATSTASGGKFDKKFAGEKPAKHQGK 240

Query: 241 YRKFLPVVEGTGIGSREREQTEKVLSRLISKNSHEILNVNKAVNMYNVKKEKKQRN-QGK 300
           YRKFLPVVEGTGIGSREREQTEKVLSRLISKNSHEILNVNKAVNMYNVKKEKKQRN QGK
Sbjct: 241 YRKFLPVVEGTGIGSREREQTEKVLSRLISKNSHEILNVNKAVNMYNVKKEKKQRNQQGK 300

Query: 301 SSSMSSKLKPNKKLQKKPLKKGSSKQGKAK 330
           SSS SSKLK NKKLQKKPLKKGSSKQGKAK
Sbjct: 301 SSSSSSKLKANKKLQKKPLKKGSSKQGKAK 330

[Close]

BLAST of CsaV3_1G042300 vs. NCBI nr
Match: XP_016900912.1 (PREDICTED: ribosome biogenesis regulatory protein homolog [Cucumis melo])

HSP 1 Score: 590.1 bits (1520), Expect = 1.2e-164
Identity = 315/330 (95.45%), Postives = 318/330 (96.36%), Query Frame = 0


Query: 1   MEIENQHPFQIDLGHLMAFNPHHQFPSLPSSREDLVSECLQKGTELVQSIANDLFNLPST 60
           MEIENQHPFQIDLGHLMAFNPHHQFPS+P SRE+L+SECLQKGTELVQSIANDLFNLPST
Sbjct: 1   MEIENQHPFQIDLGHLMAFNPHHQFPSIPPSREELISECLQKGTELVQSIANDLFNLPST 60

Query: 61  EDRDGPLVRLPPPTTRLPREKPLPKPKPPTKWELFAQKKGIKNRKKDKRVYDEQTHTWKR 120
           EDRDGPLVRLPPPTTRLPREKPLPKPKPPTKWELFAQ       KKDKRVYDEQ HTWKR
Sbjct: 61  EDRDGPLVRLPPPTTRLPREKPLPKPKPPTKWELFAQ-------KKDKRVYDEQMHTWKR 120

Query: 121 RHGYDRANDEDNIPIIEAKMTDESGEDPFAARRADKKKRVEKQEKNRLQNLKQAAKVGAL 180
           RHGYDRANDEDNIPIIEAKMTDESGEDPFAARRADKKKRVEKQEKNRLQNLKQAAKVGAL
Sbjct: 121 RHGYDRANDEDNIPIIEAKMTDESGEDPFAARRADKKKRVEKQEKNRLQNLKQAAKVGAL 180

Query: 181 PSHIQLAATALPITGTQAAPKKITKDELGNVAGMAATSTASGGKFDKKFAGEKPAKHQGK 240
           PSHIQLAATALPITGTQAAPKKITKDELGNVAGMAATSTASGGKFDKKFAGEKPAKHQGK
Sbjct: 181 PSHIQLAATALPITGTQAAPKKITKDELGNVAGMAATSTASGGKFDKKFAGEKPAKHQGK 240

Query: 241 YRKFLPVVEGTGIGSREREQTEKVLSRLISKNSHEILNVNKAVNMYNVKKEKKQRN-QGK 300
           YRKFLPVVEGTGIGSREREQTEKVLSRLISKNSHEILNVNKAVNMYNVKKEKKQRN QGK
Sbjct: 241 YRKFLPVVEGTGIGSREREQTEKVLSRLISKNSHEILNVNKAVNMYNVKKEKKQRNQQGK 300

Query: 301 SSSMSSKLKPNKKLQKKPLKKGSSKQGKAK 330
           SSS SSKLK NKKLQKKPLKKGSSKQGKAK
Sbjct: 301 SSSSSSKLKANKKLQKKPLKKGSSKQGKAK 323

[Close]

BLAST of CsaV3_1G042300 vs. NCBI nr
Match: XP_038878495.1 (ribosome biogenesis regulatory protein homolog [Benincasa hispida])

HSP 1 Score: 587.8 bits (1514), Expect = 5.8e-164
Identity = 310/330 (93.94%), Postives = 320/330 (96.97%), Query Frame = 0


Query: 1   MEIENQHPFQIDLGHLMAFNPHHQFPSLPSSREDLVSECLQKGTELVQSIANDLFNLPST 60
           MEIENQHPFQ+DLG+LMAFNPHH FPSLPSSRE+LV+ECLQKGTELVQ IANDLFNLPST
Sbjct: 1   MEIENQHPFQVDLGNLMAFNPHHHFPSLPSSREELVNECLQKGTELVQFIANDLFNLPST 60

Query: 61  EDRDGPLVRLPPPTTRLPREKPLPKPKPPTKWELFAQKKGIKNRKKDKRVYDEQTHTWKR 120
           EDRDGPLV+LPPPTTRLPREKPLPKPKPPTKWELFAQKKGIK RKKDKRVYDEQ  TWKR
Sbjct: 61  EDRDGPLVKLPPPTTRLPREKPLPKPKPPTKWELFAQKKGIKKRKKDKRVYDEQAGTWKR 120

Query: 121 RHGYDRANDEDNIPIIEAKMTDESGEDPFAARRADKKKRVEKQEKNRLQNLKQAAKVGAL 180
           RHGYDRANDE+NIPIIEAKMTDE GEDPFAARRADKKKRVEKQEKNRLQNLKQAAKVGAL
Sbjct: 121 RHGYDRANDEENIPIIEAKMTDEPGEDPFAARRADKKKRVEKQEKNRLQNLKQAAKVGAL 180

Query: 181 PSHIQLAATALPITGTQAAPKKITKDELGNVAGMAATSTASGGKFDKKFAGEKPAKHQGK 240
           PSHIQLAATALPITGTQAAPKKITKDELGNVAGMAATSTASGGKFDKK  GEKPAKHQGK
Sbjct: 181 PSHIQLAATALPITGTQAAPKKITKDELGNVAGMAATSTASGGKFDKKLTGEKPAKHQGK 240

Query: 241 YRKFLPVVEGTGIGSREREQTEKVLSRLISKNSHEILNVNKAVNMYNVKKEKKQRNQ-GK 300
           YRKFLPVVEGTGIGS+E+EQTEKVL+RLISKNSHEILNV+KAVNMYNVKKEKKQRNQ GK
Sbjct: 241 YRKFLPVVEGTGIGSQEKEQTEKVLNRLISKNSHEILNVSKAVNMYNVKKEKKQRNQRGK 300

Query: 301 SSSMSSKLKPNKKLQKKPLKKGSSKQGKAK 330
           SSSMSSKLKPNKKLQKKPLKKGSSK GKAK
Sbjct: 301 SSSMSSKLKPNKKLQKKPLKKGSSKHGKAK 330

[Close]

BLAST of CsaV3_1G042300 vs. NCBI nr
Match: XP_022933585.1 (ribosome biogenesis regulatory protein homolog [Cucurbita moschata] >XP_022933586.1 ribosome biogenesis regulatory protein homolog [Cucurbita moschata] >XP_022933587.1 ribosome biogenesis regulatory protein homolog [Cucurbita moschata] >KAG6588164.1 Ribosome biogenesis regulatory protein-like protein, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 566.2 bits (1458), Expect = 1.8e-157
Identity = 301/331 (90.94%), Postives = 317/331 (95.77%), Query Frame = 0


Query: 1   MEIENQHPFQIDLGHLMAFNPHHQFPSLPSSREDLVSECLQKGTELVQSIANDLFNLPST 60
           ME+ENQ PFQIDLG+LMAFNPHHQ+PSL SSREDLVSECLQKG EL Q IANDLFNLPST
Sbjct: 1   MEMENQQPFQIDLGNLMAFNPHHQYPSLSSSREDLVSECLQKGAELAQFIANDLFNLPST 60

Query: 61  EDRDGPLVRLPPPTTRLPREKPLPKPKPPTKWELFAQKKGIKNRKKDKRVYDEQTHTWKR 120
           EDRDGPLVRLPPP+TRLPREKPLPKPKPPTKWELFA+K+GIKNRKKDK VYD+QT +WKR
Sbjct: 61  EDRDGPLVRLPPPSTRLPREKPLPKPKPPTKWELFAKKRGIKNRKKDKIVYDDQTGSWKR 120

Query: 121 RHGYDRANDEDNIPIIEAKMTDESGEDPFAARRADKKKRVEKQEKNRLQNLKQAAKVGAL 180
           RHGYDRANDE+NIPIIEAKMTDE G DPFAARRA+KK RVEKQE+N+LQNLKQAAKVGAL
Sbjct: 121 RHGYDRANDEENIPIIEAKMTDEPGVDPFAARRANKKNRVEKQERNQLQNLKQAAKVGAL 180

Query: 181 PSHIQLAATALPITGTQAAPKKITKDELGNVAGMAATSTASGGKFDKKFAGEKPAKHQGK 240
           PSH+QLAATALPITGTQAAPKKITKDELGNVAGMAATSTASGGKFDKK AGEKPAKHQGK
Sbjct: 181 PSHVQLAATALPITGTQAAPKKITKDELGNVAGMAATSTASGGKFDKKLAGEKPAKHQGK 240

Query: 241 YRKFLPVVEGTGIGSREREQTEKVLSRLISKNSHEILNVNKAVNMYNVKKEKKQRNQ-GK 300
           YRKFLPVVEGTGIGS+EREQTEKVL+RLISKNSHEILN+NKAVNMYNVKKEKKQRNQ GK
Sbjct: 241 YRKFLPVVEGTGIGSQEREQTEKVLNRLISKNSHEILNINKAVNMYNVKKEKKQRNQRGK 300

Query: 301 SSSMSS-KLKPNKKLQKKPLKKGSSKQGKAK 330
           SSSMSS KLKPNKKLQKKPLKKGSSK GKAK
Sbjct: 301 SSSMSSNKLKPNKKLQKKPLKKGSSKNGKAK 331

[Close]

BLAST of CsaV3_1G042300 vs. ExPASy Swiss-Prot
Match: Q9SH88 (Ribosome biogenesis regulatory protein homolog OS=Arabidopsis thaliana OX=3702 GN=At2g37990 PE=2 SV=2)

HSP 1 Score: 406.8 bits (1044), Expect = 2.4e-112
Identity = 216/319 (67.71%), Postives = 259/319 (81.19%), Query Frame = 0


Query: 2   EIENQHPFQIDLGHLMAFNPHHQFPSLPSSREDLVSECLQKGTELVQSIANDLFNLPSTE 61
           E+E +  +Q+D+G+L+AFNP+H+FPS PSSR +LV E L +GT+LVQ IAN LFN PSTE
Sbjct: 4   EMETEQIYQVDVGNLLAFNPNHRFPSAPSSRGELVKEILTEGTKLVQEIANKLFNFPSTE 63

Query: 62  DRDGPLVRLPPPTTRLPREKPLPKPKPPTKWELFAQKKGIKNRKKDKRVYDEQTHTWKRR 121
             DGP+V+LPPPTT+LPREK +P+PKPPTKWE FA KKGI+ RKK+K V+DEQT+ +KRR
Sbjct: 64  TNDGPIVQLPPPTTKLPREKHIPRPKPPTKWEEFALKKGIQKRKKEKVVWDEQTNQFKRR 123

Query: 122 HGYDRANDEDNIPIIEAKMTDESGEDPFAARRADKKKRVEKQEKNRLQNLKQAAKVGALP 181
           HGYDR ND++++PIIEAK +DE G DPFA R  DKKKRV KQEKNRLQNLK A K GALP
Sbjct: 124 HGYDRVNDDNDVPIIEAKESDEPGVDPFAKRLDDKKKRVGKQEKNRLQNLKAAEKAGALP 183

Query: 182 SHIQLAATALPITGTQAAPKKITKDELGNVAGMAATSTASGGKFDKKFAGEKPAKHQGKY 241
           SH+QLAAT+LPI+GT+A PKKI KDELG+VAG+AATSTASGGKFDKK  GEKP K QGK+
Sbjct: 184 SHVQLAATSLPISGTKAQPKKIGKDELGDVAGLAATSTASGGKFDKKLPGEKPPKKQGKH 243

Query: 242 RKFLPVVEGTGIGSREREQTEKVLSRLISKNSHEILNVNKAVNMYNVKKEKKQRNQGKSS 301
            K+LPVV G G  + E+EQT  VLS++ SK+SHEILNV KA+NMYNVKKEKK+      S
Sbjct: 244 HKYLPVVSGRGDVNAEKEQTNNVLSKIFSKHSHEILNVGKAINMYNVKKEKKK------S 303

Query: 302 SMSSKLKPNKKLQKKPLKK 321
             S KLKP K + KKP  K
Sbjct: 304 GRSDKLKPKKDITKKPANK 316

[Close]

BLAST of CsaV3_1G042300 vs. ExPASy Swiss-Prot
Match: Q15050 (Ribosome biogenesis regulatory protein homolog OS=Homo sapiens OX=9606 GN=RRS1 PE=1 SV=2)

HSP 1 Score: 131.7 bits (330), Expect = 1.5e-29
Identity = 120/333 (36.04%), Postives = 172/333 (51.65%), Query Frame = 0


Query: 3   IENQHPFQIDLGHLMAF--NPHHQFPSLPSSREDLVSECLQKGTELVQSIANDLFNLPST 62
           +  +   Q DLG+L+A   NP         + E  +    +  T+L   + N L+ LP+ 
Sbjct: 26  VHKELELQFDLGNLLASDRNPPTGLRCAGPTPEAELQALARDNTQL---LINQLWQLPTE 85

Query: 63  EDRDGPLVRLPPPTTRLPREKPLPKPKPPTKWELFAQKKGIKNRKKDKRVYDEQTHTWKR 122
              +  + RLP PTTRLPREKPLP+P+P T+W+ FA+ KGI+ +KK   V+DE +  W+R
Sbjct: 86  RVEEAIVARLPEPTTRLPREKPLPRPRPLTRWQQFARLKGIRPKKKTNLVWDEVSGQWRR 145

Query: 123 RHGYDRANDEDNIPIIEAKMTDESGEDPFAARRADKKKRVEKQEKNRLQNLKQAAKVGAL 182
           R GY RA D+    +IE     +  ED FA R   KK+RV K E NRL+NL +A K+  L
Sbjct: 146 RWGYQRARDDTKEWLIEVPGNADPLEDQFAKRIQAKKERVAKNELNRLRNLARAHKM-QL 205

Query: 183 PSHIQLAATALPITGTQAAPKKITKDELGNVAGMAATSTASGGKFDKKFAGEKPAKHQGK 242
           PS     A  L  TG Q      +K+ELG    +A  STAS G+F ++   EK  +  GK
Sbjct: 206 PS-----AAGLHPTGHQ------SKEELGRAMQVAKVSTASVGRFQERLPKEKVPRGSGK 265

Query: 243 YRKFLPVVEGTGIGSREREQTEKVLSRLISKNSHEILNVNKAVNMYNVKKEKKQRNQGKS 302
            RKF P+    G  + E++   ++L  + SK     L+V +A N     +E+ Q    K 
Sbjct: 266 KRKFQPLF---GDFAAEKKNQLELLRVMNSKKPQ--LDVTRATN--KQMREEDQEEAAKR 325

Query: 303 SSMSSKLK-------PNKKLQKKPLKKGSSKQG 327
             MS K K       P  K +  P  +G  ++G
Sbjct: 326 RKMSQKGKRKGGRQGPGGKRKGGPPSQGGKRKG 336

[Close]

BLAST of CsaV3_1G042300 vs. ExPASy Swiss-Prot
Match: Q2KIH4 (Ribosome biogenesis regulatory protein homolog OS=Bos taurus OX=9913 GN=RRS1 PE=2 SV=1)

HSP 1 Score: 129.0 bits (323), Expect = 9.7e-29
Identity = 110/319 (34.48%), Postives = 171/319 (53.61%), Query Frame = 0


Query: 10  QIDLGHLMAF--NPHHQFPSLPSSREDLVSECLQKGTELVQSIANDLFNLPSTEDRDGPL 69
           + DLG+L+A   NP         ++E  +    +  T+L   + N L+ LP+    +  +
Sbjct: 33  EFDLGNLLASDRNPPTGLRHAGPTQEAELRALARDNTQL---LINQLWQLPTERVEEALV 92

Query: 70  VRLPPPTTRLPREKPLPKPKPPTKWELFAQKKGIKNRKKDKRVYDEQTHTWKRRHGYDRA 129
            RLP P+TRLPREKP+P+P+P T+W+ FA+ KGI+ +KK   V+DE +  W+RR GY RA
Sbjct: 93  ARLPEPSTRLPREKPVPRPRPLTRWQQFARLKGIRPKKKTNLVWDEVSGRWRRRWGYQRA 152

Query: 130 NDEDNIPIIEAKMTDESGEDPFAARRADKKKRVEKQEKNRLQNLKQAAKVGALPSHIQLA 189
            D+    +IE     +  ED FA R   KK+RV K E NRL+NL +A K+  LPS     
Sbjct: 153 RDDTKEWLIEVPGNADPMEDQFAKRIQAKKERVAKNELNRLRNLARAHKM-QLPS----- 212

Query: 190 ATALPITGTQAAPKKITKDELGNVAGMAATSTASGGKFDKKFAGEKPAKHQGKYRKFLPV 249
           A  +  TG Q      +K+ELG    +A  STAS G+F ++   EK  +  GK RKF P+
Sbjct: 213 AAGMHPTGHQ------SKEELGRAMQVAKVSTASVGRFQERLPKEKAPRGSGKKRKFQPL 272

Query: 250 VEGTGIGSREREQTEKVLSRLISKNSHEILNVNKAVNMYNVKKEKKQRNQGKSSSMSSKL 309
               G  + ER+   ++L  + SK     +++ +A N    ++++++  + +  S   K 
Sbjct: 273 F---GDFAAERKSQLEMLRVMNSKKPQ--MDITRATNKQMREEDQEEAAKRRKMSQKGKR 331

Query: 310 KPNKKLQKKPLKKGSSKQG 327
           K  ++      K G+  QG
Sbjct: 333 KGGRQGPGSKRKGGTPSQG 331

[Close]

BLAST of CsaV3_1G042300 vs. ExPASy Swiss-Prot
Match: Q9CYH6 (Ribosome biogenesis regulatory protein homolog OS=Mus musculus OX=10090 GN=Rrs1 PE=1 SV=1)

HSP 1 Score: 128.6 bits (322), Expect = 1.3e-28
Identity = 112/329 (34.04%), Postives = 173/329 (52.58%), Query Frame = 0


Query: 3   IENQHPFQIDLGHLMAF--NPHHQFPSLPSSREDLVSECLQKGTELVQSIANDLFNLPST 62
           +  +   + DLG+L+A   NP         S E  +    +  T+L   + N L+ LP+ 
Sbjct: 26  VHKELELEFDLGNLLASDRNPPTVLRQAGPSPEAELRALARDNTQL---LINQLWRLPTE 85

Query: 63  EDRDGPLVRLPPPTTRLPREKPLPKPKPPTKWELFAQKKGIKNRKKDKRVYDEQTHTWKR 122
              +  + RLP P TRLPREKPLP+P+P T+W+ FA+ KGI+ +KK   V+DE +  W+R
Sbjct: 86  RVEEAVVARLPEPATRLPREKPLPRPRPLTRWQQFARLKGIRPKKKTNLVWDEASGQWRR 145

Query: 123 RHGYDRANDEDNIPIIEAKMTDESGEDPFAARRADKKKRVEKQEKNRLQNLKQAAKVGAL 182
           R GY RA D+    +IE   + +  ED FA R   KK+RV K E NRL+NL +A K+  +
Sbjct: 146 RWGYKRARDDTKEWLIEVPGSADPMEDQFAKRTQAKKERVAKNELNRLRNLARAHKM-QM 205

Query: 183 PSHIQLAATALPITGTQAAPKKITKDELGNVAGMAATSTASGGKFDKKFAGEKPAKHQGK 242
           PS     +  L  TG Q      +K+ELG    +A  STAS G+F ++   EK  +  GK
Sbjct: 206 PS-----SAGLHPTGHQ------SKEELGRAMQVAKVSTASVGRFQERLPKEKAPRGSGK 265

Query: 243 YRKFLPVVEGTGIGSREREQTEKVLSRLISKNSHEILNVNKAVNMYNVKKEKKQRNQGKS 302
            RKF P+    G  + E++   ++L  + SK     L+V +A N    ++++++  + + 
Sbjct: 266 KRKFQPLF---GDFAAEKKNQLELLRVMNSKKPR--LDVTRATNKQMREEDQEEAAKRRK 325

Query: 303 SSMSSKLKPNKKLQKKPLKKGSSKQGKAK 330
            S   K K  ++      K G   QG+ +
Sbjct: 326 MSQKGKRKGGRQGPSGKRKGGPPGQGEKR 334

[Close]

BLAST of CsaV3_1G042300 vs. ExPASy Swiss-Prot
Match: A1A5P2 (Ribosome biogenesis regulatory protein homolog OS=Rattus norvegicus OX=10116 GN=Rrs1 PE=2 SV=1)

HSP 1 Score: 128.3 bits (321), Expect = 1.7e-28
Identity = 112/329 (34.04%), Postives = 173/329 (52.58%), Query Frame = 0


Query: 3   IENQHPFQIDLGHLMAF--NPHHQFPSLPSSREDLVSECLQKGTELVQSIANDLFNLPST 62
           +  +   + DLG+L+A   NP         S E  +    +  T+L   + N L+ LP+ 
Sbjct: 26  VHKELELEFDLGNLLASDRNPPTVLRQAGPSPEAELRALARDNTQL---LVNQLWQLPTE 85

Query: 63  EDRDGPLVRLPPPTTRLPREKPLPKPKPPTKWELFAQKKGIKNRKKDKRVYDEQTHTWKR 122
              +  + RLP P TRLPREKPLP+P+P T+W+ FA+ KGI+ +KK   V+DE +  W+R
Sbjct: 86  RVEEAVVARLPEPATRLPREKPLPRPRPLTRWQQFARLKGIRPKKKTNLVWDEVSGQWRR 145

Query: 123 RHGYDRANDEDNIPIIEAKMTDESGEDPFAARRADKKKRVEKQEKNRLQNLKQAAKVGAL 182
           R GY RA D+    +IE   + +  ED FA R   KK+RV K E NRL+NL +A K+  +
Sbjct: 146 RWGYKRARDDTKEWLIEVPGSADPMEDQFAKRIRAKKERVAKNELNRLRNLARAHKM-QM 205

Query: 183 PSHIQLAATALPITGTQAAPKKITKDELGNVAGMAATSTASGGKFDKKFAGEKPAKHQGK 242
           PS     +  L  TG Q      +K+ELG    +A  STAS G+F ++   EK  +  GK
Sbjct: 206 PS-----SAGLHPTGHQ------SKEELGRAMQVAKVSTASVGRFQERLPKEKAPRGSGK 265

Query: 243 YRKFLPVVEGTGIGSREREQTEKVLSRLISKNSHEILNVNKAVNMYNVKKEKKQRNQGKS 302
            RKF P+    G  + E++   ++L  + SK     L+V +A N    ++++++  + + 
Sbjct: 266 KRKFQPLF---GDFAAEKKNQLELLRVMNSKKPQ--LDVTRATNKQMREEDQEEAAKRRK 325

Query: 303 SSMSSKLKPNKKLQKKPLKKGSSKQGKAK 330
            S   K K  ++      K G   QG+ +
Sbjct: 326 MSQKGKKKGGRQGPSGRRKGGPPSQGEKR 334

[Close]

BLAST of CsaV3_1G042300 vs. ExPASy TrEMBL
Match: A0A0A0LZY0 (Ribosome biogenesis regulatory protein OS=Cucumis sativus OX=3659 GN=Csa_1G605610 PE=3 SV=1)

HSP 1 Score: 626.7 bits (1615), Expect = 5.5e-176
Identity = 329/329 (100.00%), Postives = 329/329 (100.00%), Query Frame = 0


Query: 1   MEIENQHPFQIDLGHLMAFNPHHQFPSLPSSREDLVSECLQKGTELVQSIANDLFNLPST 60
           MEIENQHPFQIDLGHLMAFNPHHQFPSLPSSREDLVSECLQKGTELVQSIANDLFNLPST
Sbjct: 1   MEIENQHPFQIDLGHLMAFNPHHQFPSLPSSREDLVSECLQKGTELVQSIANDLFNLPST 60

Query: 61  EDRDGPLVRLPPPTTRLPREKPLPKPKPPTKWELFAQKKGIKNRKKDKRVYDEQTHTWKR 120
           EDRDGPLVRLPPPTTRLPREKPLPKPKPPTKWELFAQKKGIKNRKKDKRVYDEQTHTWKR
Sbjct: 61  EDRDGPLVRLPPPTTRLPREKPLPKPKPPTKWELFAQKKGIKNRKKDKRVYDEQTHTWKR 120

Query: 121 RHGYDRANDEDNIPIIEAKMTDESGEDPFAARRADKKKRVEKQEKNRLQNLKQAAKVGAL 180
           RHGYDRANDEDNIPIIEAKMTDESGEDPFAARRADKKKRVEKQEKNRLQNLKQAAKVGAL
Sbjct: 121 RHGYDRANDEDNIPIIEAKMTDESGEDPFAARRADKKKRVEKQEKNRLQNLKQAAKVGAL 180

Query: 181 PSHIQLAATALPITGTQAAPKKITKDELGNVAGMAATSTASGGKFDKKFAGEKPAKHQGK 240
           PSHIQLAATALPITGTQAAPKKITKDELGNVAGMAATSTASGGKFDKKFAGEKPAKHQGK
Sbjct: 181 PSHIQLAATALPITGTQAAPKKITKDELGNVAGMAATSTASGGKFDKKFAGEKPAKHQGK 240

Query: 241 YRKFLPVVEGTGIGSREREQTEKVLSRLISKNSHEILNVNKAVNMYNVKKEKKQRNQGKS 300
           YRKFLPVVEGTGIGSREREQTEKVLSRLISKNSHEILNVNKAVNMYNVKKEKKQRNQGKS
Sbjct: 241 YRKFLPVVEGTGIGSREREQTEKVLSRLISKNSHEILNVNKAVNMYNVKKEKKQRNQGKS 300

Query: 301 SSMSSKLKPNKKLQKKPLKKGSSKQGKAK 330
           SSMSSKLKPNKKLQKKPLKKGSSKQGKAK
Sbjct: 301 SSMSSKLKPNKKLQKKPLKKGSSKQGKAK 329

[Close]

BLAST of CsaV3_1G042300 vs. ExPASy TrEMBL
Match: A0A5A7TFQ4 (Ribosome biogenesis regulatory protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold824G00350 PE=3 SV=1)

HSP 1 Score: 607.1 bits (1564), Expect = 4.5e-170
Identity = 321/330 (97.27%), Postives = 324/330 (98.18%), Query Frame = 0


Query: 1   MEIENQHPFQIDLGHLMAFNPHHQFPSLPSSREDLVSECLQKGTELVQSIANDLFNLPST 60
           MEIENQHPFQIDLGHLMAFNPHHQFPS+P SRE+L+SECLQKGTELVQSIANDLFNLPST
Sbjct: 1   MEIENQHPFQIDLGHLMAFNPHHQFPSIPPSREELISECLQKGTELVQSIANDLFNLPST 60

Query: 61  EDRDGPLVRLPPPTTRLPREKPLPKPKPPTKWELFAQKKGIKNRKKDKRVYDEQTHTWKR 120
           EDRDGPLVRLPPPTTRLPREKPLPKPKPPTKWELFA KKGIK RKKDKRVYDEQTHTWKR
Sbjct: 61  EDRDGPLVRLPPPTTRLPREKPLPKPKPPTKWELFALKKGIKKRKKDKRVYDEQTHTWKR 120

Query: 121 RHGYDRANDEDNIPIIEAKMTDESGEDPFAARRADKKKRVEKQEKNRLQNLKQAAKVGAL 180
           RHGYDRANDEDNIPIIEAKMTDESGEDPFAARRADKKKRVEKQEKNRLQNLKQAAKVGAL
Sbjct: 121 RHGYDRANDEDNIPIIEAKMTDESGEDPFAARRADKKKRVEKQEKNRLQNLKQAAKVGAL 180

Query: 181 PSHIQLAATALPITGTQAAPKKITKDELGNVAGMAATSTASGGKFDKKFAGEKPAKHQGK 240
           PSHIQLAATALPITGTQAAPKKITKDELGNVAGMAATSTASGGKFDKKFAGEKPAKHQGK
Sbjct: 181 PSHIQLAATALPITGTQAAPKKITKDELGNVAGMAATSTASGGKFDKKFAGEKPAKHQGK 240

Query: 241 YRKFLPVVEGTGIGSREREQTEKVLSRLISKNSHEILNVNKAVNMYNVKKEKKQRN-QGK 300
           YRKFLPVVEGTGIGSREREQTEKVLSRLISKNSHEILNVNKAVNMYNVKKEKKQRN QGK
Sbjct: 241 YRKFLPVVEGTGIGSREREQTEKVLSRLISKNSHEILNVNKAVNMYNVKKEKKQRNQQGK 300

Query: 301 SSSMSSKLKPNKKLQKKPLKKGSSKQGKAK 330
           SSS SSKLK NKKLQKKPLKKGSSKQGKAK
Sbjct: 301 SSSSSSKLKANKKLQKKPLKKGSSKQGKAK 330

[Close]

BLAST of CsaV3_1G042300 vs. ExPASy TrEMBL
Match: A0A1S4DY55 (Ribosome biogenesis regulatory protein OS=Cucumis melo OX=3656 GN=LOC103492493 PE=3 SV=1)

HSP 1 Score: 590.1 bits (1520), Expect = 5.7e-165
Identity = 315/330 (95.45%), Postives = 318/330 (96.36%), Query Frame = 0


Query: 1   MEIENQHPFQIDLGHLMAFNPHHQFPSLPSSREDLVSECLQKGTELVQSIANDLFNLPST 60
           MEIENQHPFQIDLGHLMAFNPHHQFPS+P SRE+L+SECLQKGTELVQSIANDLFNLPST
Sbjct: 1   MEIENQHPFQIDLGHLMAFNPHHQFPSIPPSREELISECLQKGTELVQSIANDLFNLPST 60

Query: 61  EDRDGPLVRLPPPTTRLPREKPLPKPKPPTKWELFAQKKGIKNRKKDKRVYDEQTHTWKR 120
           EDRDGPLVRLPPPTTRLPREKPLPKPKPPTKWELFAQ       KKDKRVYDEQ HTWKR
Sbjct: 61  EDRDGPLVRLPPPTTRLPREKPLPKPKPPTKWELFAQ-------KKDKRVYDEQMHTWKR 120

Query: 121 RHGYDRANDEDNIPIIEAKMTDESGEDPFAARRADKKKRVEKQEKNRLQNLKQAAKVGAL 180
           RHGYDRANDEDNIPIIEAKMTDESGEDPFAARRADKKKRVEKQEKNRLQNLKQAAKVGAL
Sbjct: 121 RHGYDRANDEDNIPIIEAKMTDESGEDPFAARRADKKKRVEKQEKNRLQNLKQAAKVGAL 180

Query: 181 PSHIQLAATALPITGTQAAPKKITKDELGNVAGMAATSTASGGKFDKKFAGEKPAKHQGK 240
           PSHIQLAATALPITGTQAAPKKITKDELGNVAGMAATSTASGGKFDKKFAGEKPAKHQGK
Sbjct: 181 PSHIQLAATALPITGTQAAPKKITKDELGNVAGMAATSTASGGKFDKKFAGEKPAKHQGK 240

Query: 241 YRKFLPVVEGTGIGSREREQTEKVLSRLISKNSHEILNVNKAVNMYNVKKEKKQRN-QGK 300
           YRKFLPVVEGTGIGSREREQTEKVLSRLISKNSHEILNVNKAVNMYNVKKEKKQRN QGK
Sbjct: 241 YRKFLPVVEGTGIGSREREQTEKVLSRLISKNSHEILNVNKAVNMYNVKKEKKQRNQQGK 300

Query: 301 SSSMSSKLKPNKKLQKKPLKKGSSKQGKAK 330
           SSS SSKLK NKKLQKKPLKKGSSKQGKAK
Sbjct: 301 SSSSSSKLKANKKLQKKPLKKGSSKQGKAK 323

[Close]

BLAST of CsaV3_1G042300 vs. ExPASy TrEMBL
Match: A0A6J1F066 (Ribosome biogenesis regulatory protein OS=Cucurbita moschata OX=3662 GN=LOC111440969 PE=3 SV=1)

HSP 1 Score: 566.2 bits (1458), Expect = 8.8e-158
Identity = 301/331 (90.94%), Postives = 317/331 (95.77%), Query Frame = 0


Query: 1   MEIENQHPFQIDLGHLMAFNPHHQFPSLPSSREDLVSECLQKGTELVQSIANDLFNLPST 60
           ME+ENQ PFQIDLG+LMAFNPHHQ+PSL SSREDLVSECLQKG EL Q IANDLFNLPST
Sbjct: 1   MEMENQQPFQIDLGNLMAFNPHHQYPSLSSSREDLVSECLQKGAELAQFIANDLFNLPST 60

Query: 61  EDRDGPLVRLPPPTTRLPREKPLPKPKPPTKWELFAQKKGIKNRKKDKRVYDEQTHTWKR 120
           EDRDGPLVRLPPP+TRLPREKPLPKPKPPTKWELFA+K+GIKNRKKDK VYD+QT +WKR
Sbjct: 61  EDRDGPLVRLPPPSTRLPREKPLPKPKPPTKWELFAKKRGIKNRKKDKIVYDDQTGSWKR 120

Query: 121 RHGYDRANDEDNIPIIEAKMTDESGEDPFAARRADKKKRVEKQEKNRLQNLKQAAKVGAL 180
           RHGYDRANDE+NIPIIEAKMTDE G DPFAARRA+KK RVEKQE+N+LQNLKQAAKVGAL
Sbjct: 121 RHGYDRANDEENIPIIEAKMTDEPGVDPFAARRANKKNRVEKQERNQLQNLKQAAKVGAL 180

Query: 181 PSHIQLAATALPITGTQAAPKKITKDELGNVAGMAATSTASGGKFDKKFAGEKPAKHQGK 240
           PSH+QLAATALPITGTQAAPKKITKDELGNVAGMAATSTASGGKFDKK AGEKPAKHQGK
Sbjct: 181 PSHVQLAATALPITGTQAAPKKITKDELGNVAGMAATSTASGGKFDKKLAGEKPAKHQGK 240

Query: 241 YRKFLPVVEGTGIGSREREQTEKVLSRLISKNSHEILNVNKAVNMYNVKKEKKQRNQ-GK 300
           YRKFLPVVEGTGIGS+EREQTEKVL+RLISKNSHEILN+NKAVNMYNVKKEKKQRNQ GK
Sbjct: 241 YRKFLPVVEGTGIGSQEREQTEKVLNRLISKNSHEILNINKAVNMYNVKKEKKQRNQRGK 300

Query: 301 SSSMSS-KLKPNKKLQKKPLKKGSSKQGKAK 330
           SSSMSS KLKPNKKLQKKPLKKGSSK GKAK
Sbjct: 301 SSSMSSNKLKPNKKLQKKPLKKGSSKNGKAK 331

[Close]

BLAST of CsaV3_1G042300 vs. ExPASy TrEMBL
Match: A0A6J1HW20 (Ribosome biogenesis regulatory protein OS=Cucurbita maxima OX=3661 GN=LOC111467179 PE=3 SV=1)

HSP 1 Score: 565.8 bits (1457), Expect = 1.1e-157
Identity = 301/331 (90.94%), Postives = 317/331 (95.77%), Query Frame = 0


Query: 1   MEIENQHPFQIDLGHLMAFNPHHQFPSLPSSREDLVSECLQKGTELVQSIANDLFNLPST 60
           ME+ENQ PFQIDLG+LMAFNPHH+FPSL SSREDLVSECLQKG EL Q IANDLFNLPST
Sbjct: 1   MEMENQQPFQIDLGNLMAFNPHHKFPSLSSSREDLVSECLQKGAELAQFIANDLFNLPST 60

Query: 61  EDRDGPLVRLPPPTTRLPREKPLPKPKPPTKWELFAQKKGIKNRKKDKRVYDEQTHTWKR 120
           EDRDGPLVRLPPP+TRLPREKPLPKPKPPTKWELFA+K+GIKNRKKDK VYD+QT +WKR
Sbjct: 61  EDRDGPLVRLPPPSTRLPREKPLPKPKPPTKWELFAKKRGIKNRKKDKIVYDDQTGSWKR 120

Query: 121 RHGYDRANDEDNIPIIEAKMTDESGEDPFAARRADKKKRVEKQEKNRLQNLKQAAKVGAL 180
           RHGYDRANDE+NIPIIEAKMTDE G DPFAARRA+KK RVEKQE+N+LQNLKQAAKVGAL
Sbjct: 121 RHGYDRANDEENIPIIEAKMTDEPGVDPFAARRANKKNRVEKQERNQLQNLKQAAKVGAL 180

Query: 181 PSHIQLAATALPITGTQAAPKKITKDELGNVAGMAATSTASGGKFDKKFAGEKPAKHQGK 240
           PSH+QLAATALPITGTQAAPKKITKDELGNVAGMAATSTASGGKFDKK AGEKPAKHQGK
Sbjct: 181 PSHVQLAATALPITGTQAAPKKITKDELGNVAGMAATSTASGGKFDKKLAGEKPAKHQGK 240

Query: 241 YRKFLPVVEGTGIGSREREQTEKVLSRLISKNSHEILNVNKAVNMYNVKKEKKQRNQ-GK 300
           YRKFLPVVEGTGIGS+EREQTEKVL+RLISKNSHEILN+NKAVNMYNVKKEKKQRNQ GK
Sbjct: 241 YRKFLPVVEGTGIGSQEREQTEKVLNRLISKNSHEILNINKAVNMYNVKKEKKQRNQRGK 300

Query: 301 SSSMSS-KLKPNKKLQKKPLKKGSSKQGKAK 330
           SSSMSS KLKPNKKLQKKPLKKGSSK GKAK
Sbjct: 301 SSSMSSNKLKPNKKLQKKPLKKGSSKNGKAK 331

[Close]

BLAST of CsaV3_1G042300 vs. TAIR 10
Match: AT2G37990.1 (ribosome biogenesis regulatory protein (RRS1) family protein )

HSP 1 Score: 406.8 bits (1044), Expect = 1.7e-113
Identity = 216/319 (67.71%), Postives = 259/319 (81.19%), Query Frame = 0


Query: 2   EIENQHPFQIDLGHLMAFNPHHQFPSLPSSREDLVSECLQKGTELVQSIANDLFNLPSTE 61
           E+E +  +Q+D+G+L+AFNP+H+FPS PSSR +LV E L +GT+LVQ IAN LFN PSTE
Sbjct: 4   EMETEQIYQVDVGNLLAFNPNHRFPSAPSSRGELVKEILTEGTKLVQEIANKLFNFPSTE 63

Query: 62  DRDGPLVRLPPPTTRLPREKPLPKPKPPTKWELFAQKKGIKNRKKDKRVYDEQTHTWKRR 121
             DGP+V+LPPPTT+LPREK +P+PKPPTKWE FA KKGI+ RKK+K V+DEQT+ +KRR
Sbjct: 64  TNDGPIVQLPPPTTKLPREKHIPRPKPPTKWEEFALKKGIQKRKKEKVVWDEQTNQFKRR 123

Query: 122 HGYDRANDEDNIPIIEAKMTDESGEDPFAARRADKKKRVEKQEKNRLQNLKQAAKVGALP 181
           HGYDR ND++++PIIEAK +DE G DPFA R  DKKKRV KQEKNRLQNLK A K GALP
Sbjct: 124 HGYDRVNDDNDVPIIEAKESDEPGVDPFAKRLDDKKKRVGKQEKNRLQNLKAAEKAGALP 183

Query: 182 SHIQLAATALPITGTQAAPKKITKDELGNVAGMAATSTASGGKFDKKFAGEKPAKHQGKY 241
           SH+QLAAT+LPI+GT+A PKKI KDELG+VAG+AATSTASGGKFDKK  GEKP K QGK+
Sbjct: 184 SHVQLAATSLPISGTKAQPKKIGKDELGDVAGLAATSTASGGKFDKKLPGEKPPKKQGKH 243

Query: 242 RKFLPVVEGTGIGSREREQTEKVLSRLISKNSHEILNVNKAVNMYNVKKEKKQRNQGKSS 301
            K+LPVV G G  + E+EQT  VLS++ SK+SHEILNV KA+NMYNVKKEKK+      S
Sbjct: 244 HKYLPVVSGRGDVNAEKEQTNNVLSKIFSKHSHEILNVGKAINMYNVKKEKKK------S 303

Query: 302 SMSSKLKPNKKLQKKPLKK 321
             S KLKP K + KKP  K
Sbjct: 304 GRSDKLKPKKDITKKPANK 316

The following BLAST results are available for this feature:

BLAST of CsaV3_1G042300 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_004149022.1	1.1e-175	100.00	ribosome biogenesis regulatory protein homolog [Cucumis sativus] >KGN66432.1 hyp...	[more]
KAA0042254.1	9.3e-170	97.27	ribosome biogenesis regulatory protein-like protein [Cucumis melo var. makuwa]	[more]
XP_016900912.1	1.2e-164	95.45	PREDICTED: ribosome biogenesis regulatory protein homolog [Cucumis melo]	[more]
XP_038878495.1	5.8e-164	93.94	ribosome biogenesis regulatory protein homolog [Benincasa hispida]	[more]
XP_022933585.1	1.8e-157	90.94	ribosome biogenesis regulatory protein homolog [Cucurbita moschata] >XP_02293358...	[more]

BLAST of CsaV3_1G042300 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9SH88	2.4e-112	67.71	Ribosome biogenesis regulatory protein homolog OS=Arabidopsis thaliana OX=3702 G...	[more]
Q15050	1.5e-29	36.04	Ribosome biogenesis regulatory protein homolog OS=Homo sapiens OX=9606 GN=RRS1 P...	[more]
Q2KIH4	9.7e-29	34.48	Ribosome biogenesis regulatory protein homolog OS=Bos taurus OX=9913 GN=RRS1 PE=...	[more]
Q9CYH6	1.3e-28	34.04	Ribosome biogenesis regulatory protein homolog OS=Mus musculus OX=10090 GN=Rrs1 ...	[more]
A1A5P2	1.7e-28	34.04	Ribosome biogenesis regulatory protein homolog OS=Rattus norvegicus OX=10116 GN=...	[more]

BLAST of CsaV3_1G042300 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0LZY0	5.5e-176	100.00	Ribosome biogenesis regulatory protein OS=Cucumis sativus OX=3659 GN=Csa_1G60561...	[more]
A0A5A7TFQ4	4.5e-170	97.27	Ribosome biogenesis regulatory protein OS=Cucumis melo var. makuwa OX=1194695 GN...	[more]
A0A1S4DY55	5.7e-165	95.45	Ribosome biogenesis regulatory protein OS=Cucumis melo OX=3656 GN=LOC103492493 P...	[more]
A0A6J1F066	8.8e-158	90.94	Ribosome biogenesis regulatory protein OS=Cucurbita moschata OX=3662 GN=LOC11144...	[more]
A0A6J1HW20	1.1e-157	90.94	Ribosome biogenesis regulatory protein OS=Cucurbita maxima OX=3661 GN=LOC1114671...	[more]

BLAST of CsaV3_1G042300 vs. TAIR 10


Match Name	E-value	Identity	Description
AT2G37990.1	1.7e-113	67.71	ribosome biogenesis regulatory protein (RRS1) family protein	[more]

InterPro

Analysis Name: InterPro Annotations of Cucumber (Chinese Long) v3
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	COILS	Coil	Coil	coord: 151..174
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 217..238
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 57..90
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 286..329
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 309..329
None	No IPR available	PANTHER	PTHR17602:SF5	RIBOSOME BIOGENESIS REGULATORY PROTEIN	coord: 1..318
IPR007023	Ribosomal biogenesis regulatory protein	PFAM	PF04939	RRS1	coord: 8..171 e-value: 7.4E-55 score: 185.3
IPR007023	Ribosomal biogenesis regulatory protein	PANTHER	PTHR17602	RIBOSOME BIOGENESIS REGULATORY PROTEIN	coord: 1..318

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CsaV3_1G042300.1	CsaV3_1G042300.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0042254	ribosome biogenesis
cellular_component	GO:0005634	nucleus