CsaV3_1G042080 (gene) Cucumber (Chinese Long) v3

Overview


Name	CsaV3_1G042080
Type	gene
Organism	Cucumis sativus L. var. sativus cv. Chinese Long (Cucumber (Chinese Long) v3)
Description	Protein FAR1-RELATED SEQUENCE
Location	chr1: 26884100 .. 26884324 (+)
RNA-Seq Expression	CsaV3_1G042080
Synteny	CsaV3_1G042080

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGCTTGTTTTCTTCTCAATTCCCGATAATTCTTGGAGATTGCTGGCTACCTCCGGCATCGGTTGCTGCTGAATGAACTGTCATTTTTCCATTCTTATTGAAGCTGCTCAAGTTCTTGCTGCCCTGCTCTCGGTTGCAACTGAGTCTGAGCTTTCAACCTCCTTGCTTTCTGATAAAAATGGAGATTGCCACAATCTGAAACCGAAGAATCTGATACTCACTTGA

mRNA sequence

ATGCTTGTTTTCTTCTCAATTCCCGATAATTCTTGGAGATTGCTGGCTACCTCCGGCATCGCTGCTCAAGTTCTTGCTGCCCTGCTCTCGGTTGCAACTGAGTCTGAGCTTTCAACCTCCTTGCTTTCTGATAAAAATGGAGATTGCCACAATCTGAAACCGAAGAATCTGATACTCACTTGA

Coding sequence (CDS)

ATGCTTGTTTTCTTCTCAATTCCCGATAATTCTTGGAGATTGCTGGCTACCTCCGGCATCGCTGCTCAAGTTCTTGCTGCCCTGCTCTCGGTTGCAACTGAGTCTGAGCTTTCAACCTCCTTGCTTTCTGATAAAAATGGAGATTGCCACAATCTGAAACCGAAGAATCTGATACTCACTTGA

Protein sequence

MLVFFSIPDNSWRLLATSGIAAQVLAALLSVATESELSTSLLSDKNGDCHNLKPKNLILT*

Homology

[Close]

BLAST of CsaV3_1G042080 vs. NCBI nr
Match: KGN66406.1 (hypothetical protein Csa_007095 [Cucumis sativus])

HSP 1 Score: 117.5 bits (293), Expect = 4.1e-23
Identity = 60/60 (100.00%), Postives = 60/60 (100.00%), Query Frame = 0


Query: 1  MLVFFSIPDNSWRLLATSGIAAQVLAALLSVATESELSTSLLSDKNGDCHNLKPKNLILT 60
          MLVFFSIPDNSWRLLATSGIAAQVLAALLSVATESELSTSLLSDKNGDCHNLKPKNLILT
Sbjct: 1  MLVFFSIPDNSWRLLATSGIAAQVLAALLSVATESELSTSLLSDKNGDCHNLKPKNLILT 60

[Close]

BLAST of CsaV3_1G042080 vs. NCBI nr
Match: KAA0055667.1 (protein FAR1-RELATED SEQUENCE 3 [Cucumis melo var. makuwa])

HSP 1 Score: 61.6 bits (148), Expect = 2.7e-06
Identity = 29/29 (100.00%), Postives = 29/29 (100.00%), Query Frame = 0


Query: 32  ATESELSTSLLSDKNGDCHNLKPKNLILT 61
           ATESELSTSLLSDKNGDCHNLKPKNLILT
Sbjct: 878 ATESELSTSLLSDKNGDCHNLKPKNLILT 906

[Close]

BLAST of CsaV3_1G042080 vs. NCBI nr
Match: TYK09921.1 (protein FAR1-RELATED SEQUENCE 3 [Cucumis melo var. makuwa])

HSP 1 Score: 58.2 bits (139), Expect = 3.0e-05
Identity = 28/29 (96.55%), Postives = 28/29 (96.55%), Query Frame = 0


Query: 32  ATESELSTSLLSDKNGDCHNLKPKNLILT 61
           ATESELSTSLLSDKNGDCH LKPKNLILT
Sbjct: 878 ATESELSTSLLSDKNGDCHILKPKNLILT 906

[Close]

BLAST of CsaV3_1G042080 vs. ExPASy TrEMBL
Match: A0A0A0M2I5 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G600960 PE=4 SV=1)

HSP 1 Score: 117.5 bits (293), Expect = 2.0e-23
Identity = 60/60 (100.00%), Postives = 60/60 (100.00%), Query Frame = 0


Query: 1  MLVFFSIPDNSWRLLATSGIAAQVLAALLSVATESELSTSLLSDKNGDCHNLKPKNLILT 60
          MLVFFSIPDNSWRLLATSGIAAQVLAALLSVATESELSTSLLSDKNGDCHNLKPKNLILT
Sbjct: 1  MLVFFSIPDNSWRLLATSGIAAQVLAALLSVATESELSTSLLSDKNGDCHNLKPKNLILT 60

[Close]

BLAST of CsaV3_1G042080 vs. ExPASy TrEMBL
Match: A0A5A7UM55 (Protein FAR1-RELATED SEQUENCE OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold181G00350 PE=3 SV=1)

HSP 1 Score: 61.6 bits (148), Expect = 1.3e-06
Identity = 29/29 (100.00%), Postives = 29/29 (100.00%), Query Frame = 0


Query: 32  ATESELSTSLLSDKNGDCHNLKPKNLILT 61
           ATESELSTSLLSDKNGDCHNLKPKNLILT
Sbjct: 878 ATESELSTSLLSDKNGDCHNLKPKNLILT 906

[Close]

BLAST of CsaV3_1G042080 vs. ExPASy TrEMBL
Match: A0A5D3CDK5 (Protein FAR1-RELATED SEQUENCE OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold16G00370 PE=3 SV=1)

HSP 1 Score: 58.2 bits (139), Expect = 1.4e-05
Identity = 28/29 (96.55%), Postives = 28/29 (96.55%), Query Frame = 0


Query: 32  ATESELSTSLLSDKNGDCHNLKPKNLILT 61
           ATESELSTSLLSDKNGDCH LKPKNLILT
Sbjct: 878 ATESELSTSLLSDKNGDCHILKPKNLILT 906

The following BLAST results are available for this feature:

BLAST of CsaV3_1G042080 vs. NCBI nr


Match Name	E-value	Identity	Description
KGN66406.1	4.1e-23	100.00	hypothetical protein Csa_007095 [Cucumis sativus]	[more]
KAA0055667.1	2.7e-06	100.00	protein FAR1-RELATED SEQUENCE 3 [Cucumis melo var. makuwa]	[more]
TYK09921.1	3.0e-05	96.55	protein FAR1-RELATED SEQUENCE 3 [Cucumis melo var. makuwa]	[more]

BLAST of CsaV3_1G042080 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of CsaV3_1G042080 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0M2I5	2.0e-23	100.00	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G600960 PE=4 SV=1	[more]
A0A5A7UM55	1.3e-06	100.00	Protein FAR1-RELATED SEQUENCE OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_sc...	[more]
A0A5D3CDK5	1.4e-05	96.55	Protein FAR1-RELATED SEQUENCE OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_sc...	[more]

BLAST of CsaV3_1G042080 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CsaV3_1G042080.1	CsaV3_1G042080.1	mRNA