CsaV3_1G041670 (gene) Cucumber (Chinese Long) v3

Overview


Name	CsaV3_1G041670
Type	gene
Organism	Cucumis sativus L. var. sativus cv. Chinese Long (Cucumber (Chinese Long) v3)
Description	arabinogalactan peptide 13-like
Location	chr1: 26590310 .. 26592653 (+)
RNA-Seq Expression	CsaV3_1G041670
Synteny	CsaV3_1G041670

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGAAGCAGCAGCAAAGAGATTTCAAGGTCTAATGGTAACAATGATGGTGGTTGTTCTCATCGCTATTTCATCATCATCCGCCATTGTTGCAGCTCAAGAAGCTCCAGCTCCAAGCCCAGCTTCTGATGCCTCTCTTTCTATTCCAACTTTAATGGCTTCTTTTGTTCCTCTTGTTTTTGGATTCTTTTTCATCTAATAATTCTTCCCCCTAATTCCTTCTTCTTTTATTTCATTTTTAATTACCATTTATATCTTTTGTAATTTCCCTATGGATATATAAATGTGTGTGTGTGTGTATGTGTTTTTCTTTTTTCTTTTTTCTTTTAGGGGATGGTGATTGAATTTGTTTGGGTGTGATTTGGGATTATTATTAATTTTATGTATATTTTTCCATATTAATTTAATGTTATGTTATGTTATTATTAATTTCTTTTCCTAGTTTTCTTATATTTTGCAATTATATATCTATGTTTCATTTAGCAATTCAAGTGATTTACTCATTTAGTTGAATAACATAACAAAAATTGGTAAAAAATAGAAGTGATTTTGTTCGGTATAATAATTTGTCAATTCTATCTATTTTTTAAAAATAACCCTTGGAAACATATTTCATTAGTCATTTTTAATAATTAACCGACTAAATAAGAAAAAAAAAGGTATACTATCTACTTTAATTCAAACTCGAACAACGTACATAGTATCAACATTTACTAAACCGACCATAGTCCGTTTAGTGAAAGTTTGATGGAAAAATCGATTATGAGTGACCGACGAACAGCAACCAAAACAATCACGTTTTGAAAATAAAACGACAATATAGAAACGACTAGAAAAGGTGTAGAAAATAAAAGAAAAATATGATAGAAATTTAAAAGATGTGAAAAGAAAGTTGGAGACAAAATGAAGAGTGATCACATGGGGAGGTCAGTAGTCAGTGAGCTGTGGCTTTACAGATAGAGACTCCATTATTGTAATCTTTCCAAAGCCCAAAACTAATTTTAGGTGTTAAAATGTATAAATGTTTATATATATATGGGGATGAAATGATATTTTTTGAGACCAAACCAAATTAAAATGTGTATATAGTTTAGTTTAGGTTTGTTTTAAATTTAGTATTTATTATATTCCATTGTAAATAACTAGCTGTGCTTTCAGAAGAATTAGCTACAGAAGAGCATGATAGATCAAAAAAATCGATTCAACCAACTAAACCGAAGTCGGCCCGATAGAAAACAAGATGGGTTGGTTTTGAAAAGTTTCAAATTGAGAATTTTCAAAGTGTTAAACTATCCTAACAAAAACCGACCGACCAATGATCAACAGTGAGAATAGTTGAAATAATGTTTGGTAAACATCAACTTAAACTTCGGAAATTTATATTATAGTGTTTTGTAAACAATTTTTTTTTCAAAAAAGACTTATTTTAGATATAATAACAAAATAGTTTTTACTTTATTTATTTTTAATATTATTAACAAATATCAAACAACGAAACGAATGTTTTAGCCGATTATTCTTACAAACCTATATCGTAAGTCTTATCTTTGATCCTCATTCGAGTCTATATTGTGATCAAAATTTTTACCAAGCACAAAATGACATTGGAAGGGCTCAACTTCTTGGCTTAGATAACACCAAAACGTGCTATTAAAACCATCGATGGATTTAGTATAGGCTTAGGATGGGTTTAAATTCTTCCTGAACTTTATGCAATTTATATATATATATATAAACTCAAATAGTACCAATATCATAATCGACTAGTCTAGTGGTAAAACTATGACTCGGCTCGGTTAAAAAGAGAAATATCTAAGATGAAGAGAACTATTTTTTTGGCCCTATTTGTAGGCATTACCTTGAAAATAAATTGTAACATAGAAAGAAGAATATAATGGCCACATTTTCCTATAGATATTTGTTGAGAGATATAGGAAAAAAGCAGTATTAATTAATACATTTGGAGACCAATATGATGTTGCCATTTAGCATTTTGTTTCTCTCAAACAAAAATGTCAATTTCTCTTTCATTAATGAAATTTGGAAACTTAGAGAGAGAGAGAGAGAGGACAGCATAGAGAGAAAAGGCATCACATGTTGATGCTTACTTATGCACATGGGGCTGTGACATCTAATTATTTGGCCATATTTCATATTCCATATCATATGATCCAAACAAAACTACAGTTTTATTCAAATCAAATTTTATATTTTTCTTAATTTTTGTAATCATGTCTAAATACTATAATACCCTAAATATTTCAATGTTCTTATGATATTTCATATTCTAAACTGCTTTTTTTTTTATCTTAAAGGGGACGAAAGATCATCTTGATACAGTCTAG

mRNA sequence

ATGGAAGCAGCAGCAAAGAGATTTCAAGGTCTAATGGTAACAATGATGGTGGTTGTTCTCATCGCTATTTCATCATCATCCGCCATTGTTGCAGCTCAAGAAGCTCCAGCTCCAAGCCCAGCTTCTGATGCCTCTCTTTCTATTCCAACTTTAATGGCTTCTTTTGTTCCTCTTGGGACGAAAGATCATCTTGATACAGTCTAG

Coding sequence (CDS)

ATGGAAGCAGCAGCAAAGAGATTTCAAGGTCTAATGGTAACAATGATGGTGGTTGTTCTCATCGCTATTTCATCATCATCCGCCATTGTTGCAGCTCAAGAAGCTCCAGCTCCAAGCCCAGCTTCTGATGCCTCTCTTTCTATTCCAACTTTAATGGCTTCTTTTGTTCCTCTTGGGACGAAAGATCATCTTGATACAGTCTAG

Protein sequence

MEAAAKRFQGLMVTMMVVVLIAISSSSAIVAAQEAPAPSPASDASLSIPTLMASFVPLGTKDHLDTV*

Homology

[Close]

BLAST of CsaV3_1G041670 vs. NCBI nr
Match: KAE8653471.1 (hypothetical protein Csa_007150 [Cucumis sativus])

HSP 1 Score: 119.0 bits (297), Expect = 1.6e-23
Identity = 67/67 (100.00%), Postives = 67/67 (100.00%), Query Frame = 0


Query: 1  MEAAAKRFQGLMVTMMVVVLIAISSSSAIVAAQEAPAPSPASDASLSIPTLMASFVPLGT 60
          MEAAAKRFQGLMVTMMVVVLIAISSSSAIVAAQEAPAPSPASDASLSIPTLMASFVPLGT
Sbjct: 1  MEAAAKRFQGLMVTMMVVVLIAISSSSAIVAAQEAPAPSPASDASLSIPTLMASFVPLGT 60

Query: 61 KDHLDTV 68
          KDHLDTV
Sbjct: 61 KDHLDTV 67

[Close]

BLAST of CsaV3_1G041670 vs. NCBI nr
Match: XP_011660059.1 (arabinogalactan protein 13 [Cucumis sativus])

HSP 1 Score: 99.4 bits (246), Expect = 1.3e-17
Identity = 58/58 (100.00%), Postives = 58/58 (100.00%), Query Frame = 0


Query: 1  MEAAAKRFQGLMVTMMVVVLIAISSSSAIVAAQEAPAPSPASDASLSIPTLMASFVPL 59
          MEAAAKRFQGLMVTMMVVVLIAISSSSAIVAAQEAPAPSPASDASLSIPTLMASFVPL
Sbjct: 1  MEAAAKRFQGLMVTMMVVVLIAISSSSAIVAAQEAPAPSPASDASLSIPTLMASFVPL 58

[Close]

BLAST of CsaV3_1G041670 vs. NCBI nr
Match: XP_038879727.1 (arabinogalactan protein 13-like [Benincasa hispida])

HSP 1 Score: 63.2 bits (152), Expect = 1.0e-06
Identity = 39/54 (72.22%), Postives = 45/54 (83.33%), Query Frame = 0


Query: 5  AKRFQGLMVTMMVVVLIAISSSSAIVAAQEAPAPSPASDASLSIPTLMASFVPL 59
          A + Q LM+ +MVVVL+A SSSS IVAAQEAPAPSPASDA +S+PTLMAS  PL
Sbjct: 3  AMKSQALMMMIMVVVLMAFSSSS-IVAAQEAPAPSPASDAPISLPTLMASLAPL 55

[Close]

BLAST of CsaV3_1G041670 vs. NCBI nr
Match: KAG7022018.1 (Arabinogalactan peptide 14, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 61.2 bits (147), Expect = 3.9e-06
Identity = 37/55 (67.27%), Postives = 44/55 (80.00%), Query Frame = 0


Query: 4  AAKRFQGLMVTMMVVVLIAISSSSAIVAAQEAPAPSPASDASLSIPTLMASFVPL 59
          AA +F+ LMV M+V V+   + SS+IVAAQEAPAPSPASDA LS+PTLMAS  PL
Sbjct: 2  AAMKFEALMVAMVVAVM---AFSSSIVAAQEAPAPSPASDAPLSLPTLMASLAPL 53

[Close]

BLAST of CsaV3_1G041670 vs. NCBI nr
Match: KAG7023913.1 (Arabinogalactan peptide 14, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 59.7 bits (143), Expect = 1.1e-05
Identity = 37/54 (68.52%), Postives = 43/54 (79.63%), Query Frame = 0


Query: 5  AKRFQGLMVTMMVVVLIAISSSSAIVAAQEAPAPSPASDASLSIPTLMASFVPL 59
          A +FQ LM+ M+V    A++ SS IVAAQEAPAPSPASDASLS+PTLMAS  PL
Sbjct: 3  AMKFQALMLAMVVG---AMALSSTIVAAQEAPAPSPASDASLSLPTLMASLAPL 53

[Close]

BLAST of CsaV3_1G041670 vs. ExPASy TrEMBL
Match: A0A0A0LWU9 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G599540 PE=3 SV=1)

HSP 1 Score: 99.4 bits (246), Expect = 6.3e-18
Identity = 58/58 (100.00%), Postives = 58/58 (100.00%), Query Frame = 0


Query: 1  MEAAAKRFQGLMVTMMVVVLIAISSSSAIVAAQEAPAPSPASDASLSIPTLMASFVPL 59
          MEAAAKRFQGLMVTMMVVVLIAISSSSAIVAAQEAPAPSPASDASLSIPTLMASFVPL
Sbjct: 1  MEAAAKRFQGLMVTMMVVVLIAISSSSAIVAAQEAPAPSPASDASLSIPTLMASFVPL 58

[Close]

BLAST of CsaV3_1G041670 vs. ExPASy TrEMBL
Match: A0A6J1JCI6 (arabinogalactan peptide 13-like OS=Cucurbita maxima OX=3661 GN=LOC111485538 PE=3 SV=1)

HSP 1 Score: 57.8 bits (138), Expect = 2.1e-05
Identity = 36/54 (66.67%), Postives = 42/54 (77.78%), Query Frame = 0


Query: 5  AKRFQGLMVTMMVVVLIAISSSSAIVAAQEAPAPSPASDASLSIPTLMASFVPL 59
          A +FQ LM+ M+V    A++ SS IVAAQEAPAPSPASDA LS+PTLMAS  PL
Sbjct: 3  AMKFQALMLAMVVG---AMALSSTIVAAQEAPAPSPASDAPLSLPTLMASLAPL 53

[Close]

BLAST of CsaV3_1G041670 vs. TAIR 10
Match: AT1G55330.1 (arabinogalactan protein 21 )

HSP 1 Score: 40.0 bits (92), Expect = 8.7e-04
Identity = 22/49 (44.90%), Postives = 34/49 (69.39%), Query Frame = 0


Query: 12 MVTMMVVVLIAISSSSAIVAAQEAPAPSPASDASLSIPTLMASFVPLGT 61
          M  M+ ++++A++ S+A  A  EAPAPSP SDA++ +P L AS V L +
Sbjct: 6  MKMMVFIMVVAVAFSAATAATVEAPAPSPTSDAAMFVPALFASVVALAS 54

The following BLAST results are available for this feature:

BLAST of CsaV3_1G041670 vs. NCBI nr


Match Name	E-value	Identity	Description
KAE8653471.1	1.6e-23	100.00	hypothetical protein Csa_007150 [Cucumis sativus]	[more]
XP_011660059.1	1.3e-17	100.00	arabinogalactan protein 13 [Cucumis sativus]	[more]
XP_038879727.1	1.0e-06	72.22	arabinogalactan protein 13-like [Benincasa hispida]	[more]
KAG7022018.1	3.9e-06	67.27	Arabinogalactan peptide 14, partial [Cucurbita argyrosperma subsp. argyrosperma]	[more]
KAG7023913.1	1.1e-05	68.52	Arabinogalactan peptide 14, partial [Cucurbita argyrosperma subsp. argyrosperma]	[more]

BLAST of CsaV3_1G041670 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of CsaV3_1G041670 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0LWU9	6.3e-18	100.00	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G599540 PE=3 SV=1	[more]
A0A6J1JCI6	2.1e-05	66.67	arabinogalactan peptide 13-like OS=Cucurbita maxima OX=3661 GN=LOC111485538 PE=3...	[more]

BLAST of CsaV3_1G041670 vs. TAIR 10


Match Name	E-value	Identity	Description
AT1G55330.1	8.7e-04	44.90	arabinogalactan protein 21	[more]

InterPro

Analysis Name: InterPro Annotations of Cucumber (Chinese Long) v3
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR34114:SF18	ARABINOGALACTAN PEPTIDE 13-LIKE	coord: 1..58
IPR039281	Arabinogalactan protein 3/12/13/14/21	PANTHER	PTHR34114	ARABINOGALACTAN PEPTIDE 1	coord: 1..58

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CsaV3_1G041670.1	CsaV3_1G041670.1	mRNA