CsaV3_1G041230 (gene) Cucumber (Chinese Long) v3

Overview


Name	CsaV3_1G041230
Type	gene
Organism	Cucumis sativus L. var. sativus cv. Chinese Long (Cucumber (Chinese Long) v3)
Description	Chlorophyll a-b binding protein, chloroplastic
Location	chr1: 26223514 .. 26225960 (-)
RNA-Seq Expression	CsaV3_1G041230
Synteny	CsaV3_1G041230

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonpolypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

AAAATATAAGATGATCCTGATTGATGAGTTAGAAATGAAGGTTTAAAATCTGTATATCCACAAGCAGCCATCACAGGCCATCCATTCCCCCAAATATACATTCTATAACCCCCACCAATCCTCTTTTACCCTTTTGGAGTCTCTCCGGCGCCCATGGCTCTCTCCATTTCTTCCACTGCCACTGCGCTCTCCTCCTTCCCAATCAGGTCAATCCTATTTCACATTTTTTTCATTGGTTTCTCCCAATTTCTCATTCTCCTTTCTTCTATTTGAATACAGAGACTCCTATCACAGATCAAATTTTCCGGGAAATTTCCCAAATCATAAGCTCCGTCGAGATTACTCCGATTTGAAAGCGGCGAAATCCGGCGTGTCTAGCGTCTGTGAACCGCTCCCTCCTGATAGACCCCTTTGGTTTCCCGGCAGCAGCCCGCCGGAGTGGCTCGACGGCAGGTTAATTAATTCATAGCTTATTTCATTCGTTTTTTCTTCTTCTTCTTTGATTCGTAGAATTGGAGATTTATAGCTTAAACAGTGGGTTGGCCTCTGAACTTTAGCAACAGCAACAATTTAGTACATAAATTTTCTCTTTTAAATTTGGTGTTCAACAATTTTTTTGTCTTTCATTTTTCAAACTTGTAATGATTTAGTTCGATTGTGGAAAAGTTCTATCAAAATTTATTATTCTTCTAAGCTCTTCAACTTTCAATTTTGTTGTATTAGATTAGTTTACGAACTTTAGTAGATGTGCTTTTAATTTTATTACAATTTAATCTTAAAACTTTGCATTTTACAAAACTATAGAGTCTCCATTATTGAAATATTATACAGTCAAGTTTAGCAATTAAATTGTTACAAAAATGAAAGTTCAAAAACTAAATCATTACAAAAGTTTGGAAAAAGTTTATAAACATTCTTCTCCACCTACTAAAAGTGATTATTTAACGTTTGTTTGTTCCTTCGTAGCCTTCCCGGCGATTTTGGCTTCGATCCACTTGGATTGGGTATGCTACTGTCCCTTTTTTTGTTTGATTCAAATTTACATTTTGAAAAGTAATTGGTCGTGAGAAAACTAACTTAACAACAAAGAAGATTTGGGCTATTACTATTACTATTTCTTCTTCTTTTTTCTCTTTCTGATAAAAGAAATTAAGAAAGGTGTGTTTTACGATTACAATACTATTTTTGGTTTTCACCTCGGAATAGAGACGTTCTTTTTGAGATTATTAGGCAGGAAATATGGTAGTAGGAGTGGGAATGAAAAGTTAGGAGTTTGTTGGAGAATTAAAAACAATTATTACCAAACACAATTGGAATTAGAATTGTCAATCAAACACATTTTTGTAGTGAATATGAAAATACAGACATCAAAGTGATAATTTGAAATGGGCATGTCAGGTTCGGATCCAGAGACACTAAAATGGTTCGCACAAGCAGAACTAATGCACGCAAGATGGGCAATGCTAGCCGTAGCAGGAATCCTTCTACCGGAATGGTTCGAGAGCTTAGGACTCATACAAAACTTCTCATGGTACGACGCTGGATCTCGAGAATATTTCGCAGATCCGACGACATTGCTGGTGGCGCAATTGGCGTTGATGGGGTGGGTGGAGGGGAGGCGATGGGCAGACTTGGTGAACCCGGGGAGCGTGGACGTTGACTTGAAGCTGCCCCACAAAAAGAAAGCAAAGGCAGATGTGGGCTACCCGGGTGGGTTCTGGTTTGACCCGATGATGTGGGGCAGGGGGTCGCCGGAGCCGGTGATGGTGCTGAGGACTAAAGAGATTAAGAATGGGCGGTTAGCTATGTTGGCCTTTGTTGGACTGTGGTTTCAAGCTATTTATACTGGCCAAGGACCCCTTGAGAATCTCGCTGCACACGTGGCAGACCCCGGCCATTGCAATATCTTTTCGGTACCATTATCATTCCTACCTATTATTTTTTTTTATCTTCATTGCTATATTTGAAGTAAATAAATAAATACTATGATAAAAAAGAGCACAAATCGTACACTTTTAAAAATTCATAACCAAAAAATAAAATTGTTGTCCAATGGGTCAATCTATTATTTAGTCCATTCGCAAATTGATCTCTTAAATAAGTTTTTAATGTTGTGTTCGATAAAGGTTCATGGGTGGAATATAATATTTTCGTGTTAATTTACTTTTATTTTTTGTTTGCAGGCATTTAGTTCTGGTTCGGGTTGAAATTGAATCCTTCATTTTGGTTTAGTTGAGATGGTGAAGTGTGTACATAAAAAGCAAAGAGATGAGAAGATTTGCGACAGTTTACTATATAATTGTCTACGTATTATTCAAACTCTTTAATGCTGGACTCCTCCTCACTAGTCAATATTAATTTCAAAATTATCTTAAATTATTGAATCTTAAAAATTATCGTATATGAGTAAAGAAAAATTTGATATCATATCATCTACAAGAACTACA

mRNA sequence

ATGGCTCTCTCCATTTCTTCCACTGCCACTGCGCTCTCCTCCTTCCCAATCAGAGACTCCTATCACAGATCAAATTTTCCGGGAAATTTCCCAAATCATAAGCTCCGTCGAGATTACTCCGATTTGAAAGCGGCGAAATCCGGCGTGTCTAGCGTCTGTGAACCGCTCCCTCCTGATAGACCCCTTTGGTTTCCCGGCAGCAGCCCGCCGGAGTGGCTCGACGGCAGCCTTCCCGGCGATTTTGGCTTCGATCCACTTGGATTGGGTTCGGATCCAGAGACACTAAAATGGTTCGCACAAGCAGAACTAATGCACGCAAGATGGGCAATGCTAGCCGTAGCAGGAATCCTTCTACCGGAATGGTTCGAGAGCTTAGGACTCATACAAAACTTCTCATGGTACGACGCTGGATCTCGAGAATATTTCGCAGATCCGACGACATTGCTGGTGGCGCAATTGGCGTTGATGGGGTGGGTGGAGGGGAGGCGATGGGCAGACTTGGTGAACCCGGGGAGCGTGGACGTTGACTTGAAGCTGCCCCACAAAAAGAAAGCAAAGGCAGATGTGGGCTACCCGGGTGGGTTCTGGTTTGACCCGATGATGTGGGGCAGGGGGTCGCCGGAGCCGGTGATGGTGCTGAGGACTAAAGAGATTAAGAATGGGCGGTTAGCTATGTTGGCCTTTGTTGGACTGTGGTTTCAAGCTATTTATACTGGCCAAGGACCCCTTGAGAATCTCGCTGCACACGTGGCAGACCCCGGCCATTGCAATATCTTTTCGGCATTTAGTTCTGGTTCGGGTTGA

Coding sequence (CDS)

ATGGCTCTCTCCATTTCTTCCACTGCCACTGCGCTCTCCTCCTTCCCAATCAGAGACTCCTATCACAGATCAAATTTTCCGGGAAATTTCCCAAATCATAAGCTCCGTCGAGATTACTCCGATTTGAAAGCGGCGAAATCCGGCGTGTCTAGCGTCTGTGAACCGCTCCCTCCTGATAGACCCCTTTGGTTTCCCGGCAGCAGCCCGCCGGAGTGGCTCGACGGCAGCCTTCCCGGCGATTTTGGCTTCGATCCACTTGGATTGGGTTCGGATCCAGAGACACTAAAATGGTTCGCACAAGCAGAACTAATGCACGCAAGATGGGCAATGCTAGCCGTAGCAGGAATCCTTCTACCGGAATGGTTCGAGAGCTTAGGACTCATACAAAACTTCTCATGGTACGACGCTGGATCTCGAGAATATTTCGCAGATCCGACGACATTGCTGGTGGCGCAATTGGCGTTGATGGGGTGGGTGGAGGGGAGGCGATGGGCAGACTTGGTGAACCCGGGGAGCGTGGACGTTGACTTGAAGCTGCCCCACAAAAAGAAAGCAAAGGCAGATGTGGGCTACCCGGGTGGGTTCTGGTTTGACCCGATGATGTGGGGCAGGGGGTCGCCGGAGCCGGTGATGGTGCTGAGGACTAAAGAGATTAAGAATGGGCGGTTAGCTATGTTGGCCTTTGTTGGACTGTGGTTTCAAGCTATTTATACTGGCCAAGGACCCCTTGAGAATCTCGCTGCACACGTGGCAGACCCCGGCCATTGCAATATCTTTTCGGCATTTAGTTCTGGTTCGGGTTGA

Protein sequence

MALSISSTATALSSFPIRDSYHRSNFPGNFPNHKLRRDYSDLKAAKSGVSSVCEPLPPDRPLWFPGSSPPEWLDGSLPGDFGFDPLGLGSDPETLKWFAQAELMHARWAMLAVAGILLPEWFESLGLIQNFSWYDAGSREYFADPTTLLVAQLALMGWVEGRRWADLVNPGSVDVDLKLPHKKKAKADVGYPGGFWFDPMMWGRGSPEPVMVLRTKEIKNGRLAMLAFVGLWFQAIYTGQGPLENLAAHVADPGHCNIFSAFSSGSG*

Homology

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BLAST of CsaV3_1G041230 vs. NCBI nr
Match: XP_004144043.1 (photosystem I chlorophyll a/b-binding protein 6, chloroplastic [Cucumis sativus] >KGN66318.1 hypothetical protein Csa_007477 [Cucumis sativus])

HSP 1 Score: 568.9 bits (1465), Expect = 2.3e-158
Identity = 267/267 (100.00%), Postives = 267/267 (100.00%), Query Frame = 0


Query: 1   MALSISSTATALSSFPIRDSYHRSNFPGNFPNHKLRRDYSDLKAAKSGVSSVCEPLPPDR 60
           MALSISSTATALSSFPIRDSYHRSNFPGNFPNHKLRRDYSDLKAAKSGVSSVCEPLPPDR
Sbjct: 1   MALSISSTATALSSFPIRDSYHRSNFPGNFPNHKLRRDYSDLKAAKSGVSSVCEPLPPDR 60

Query: 61  PLWFPGSSPPEWLDGSLPGDFGFDPLGLGSDPETLKWFAQAELMHARWAMLAVAGILLPE 120
           PLWFPGSSPPEWLDGSLPGDFGFDPLGLGSDPETLKWFAQAELMHARWAMLAVAGILLPE
Sbjct: 61  PLWFPGSSPPEWLDGSLPGDFGFDPLGLGSDPETLKWFAQAELMHARWAMLAVAGILLPE 120

Query: 121 WFESLGLIQNFSWYDAGSREYFADPTTLLVAQLALMGWVEGRRWADLVNPGSVDVDLKLP 180
           WFESLGLIQNFSWYDAGSREYFADPTTLLVAQLALMGWVEGRRWADLVNPGSVDVDLKLP
Sbjct: 121 WFESLGLIQNFSWYDAGSREYFADPTTLLVAQLALMGWVEGRRWADLVNPGSVDVDLKLP 180

Query: 181 HKKKAKADVGYPGGFWFDPMMWGRGSPEPVMVLRTKEIKNGRLAMLAFVGLWFQAIYTGQ 240
           HKKKAKADVGYPGGFWFDPMMWGRGSPEPVMVLRTKEIKNGRLAMLAFVGLWFQAIYTGQ
Sbjct: 181 HKKKAKADVGYPGGFWFDPMMWGRGSPEPVMVLRTKEIKNGRLAMLAFVGLWFQAIYTGQ 240

Query: 241 GPLENLAAHVADPGHCNIFSAFSSGSG 268
           GPLENLAAHVADPGHCNIFSAFSSGSG
Sbjct: 241 GPLENLAAHVADPGHCNIFSAFSSGSG 267

[Close]

BLAST of CsaV3_1G041230 vs. NCBI nr
Match: XP_008450947.1 (PREDICTED: photosystem I chlorophyll a/b-binding protein 6, chloroplastic [Cucumis melo] >KAA0055760.1 photosystem I chlorophyll a/b-binding protein 6 [Cucumis melo var. makuwa])

HSP 1 Score: 551.6 bits (1420), Expect = 3.8e-153
Identity = 260/267 (97.38%), Postives = 263/267 (98.50%), Query Frame = 0


Query: 1   MALSISSTATALSSFPIRDSYHRSNFPGNFPNHKLRRDYSDLKAAKSGVSSVCEPLPPDR 60
           MALSISS  TALSSFPIR+S HR+NFPGNFPNHKLRRDYSDLKAAKSGVSSVCEPLPPDR
Sbjct: 1   MALSISS--TALSSFPIRESSHRANFPGNFPNHKLRRDYSDLKAAKSGVSSVCEPLPPDR 60

Query: 61  PLWFPGSSPPEWLDGSLPGDFGFDPLGLGSDPETLKWFAQAELMHARWAMLAVAGILLPE 120
           PLWFPGSSPPEWLDGSLPGDFGFDPLGLGSDPETLKWFAQAELMHARWAMLAVAGILLPE
Sbjct: 61  PLWFPGSSPPEWLDGSLPGDFGFDPLGLGSDPETLKWFAQAELMHARWAMLAVAGILLPE 120

Query: 121 WFESLGLIQNFSWYDAGSREYFADPTTLLVAQLALMGWVEGRRWADLVNPGSVDVDLKLP 180
           WFESLGLIQNFSWYDAGSREYFADPTTLLVAQLALMGWVEGRRWADLVNPGSVDVDLKLP
Sbjct: 121 WFESLGLIQNFSWYDAGSREYFADPTTLLVAQLALMGWVEGRRWADLVNPGSVDVDLKLP 180

Query: 181 HKKKAKADVGYPGGFWFDPMMWGRGSPEPVMVLRTKEIKNGRLAMLAFVGLWFQAIYTGQ 240
           HKKK KADVGYPGGFWFDPMMWGRGSPEPVMVLRTKEIKNGRLAMLAFVGLWFQAIYTGQ
Sbjct: 181 HKKKVKADVGYPGGFWFDPMMWGRGSPEPVMVLRTKEIKNGRLAMLAFVGLWFQAIYTGQ 240

Query: 241 GPLENLAAHVADPGHCNIFSAFSSGSG 268
           GPLENLAAHVADPGHCNIFSAF+SGSG
Sbjct: 241 GPLENLAAHVADPGHCNIFSAFTSGSG 265

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BLAST of CsaV3_1G041230 vs. NCBI nr
Match: TYK10011.1 (photosystem I chlorophyll a/b-binding protein 6 [Cucumis melo var. makuwa])

HSP 1 Score: 540.4 bits (1391), Expect = 8.6e-150
Identity = 254/260 (97.69%), Postives = 256/260 (98.46%), Query Frame = 0


Query: 1   MALSISSTATALSSFPIRDSYHRSNFPGNFPNHKLRRDYSDLKAAKSGVSSVCEPLPPDR 60
           MALSISS  TALSSFPIR+S HR+NFPGNFPNHKLRRDYSDLKAAKSGVSSVCEPLPPDR
Sbjct: 1   MALSISS--TALSSFPIRESSHRANFPGNFPNHKLRRDYSDLKAAKSGVSSVCEPLPPDR 60

Query: 61  PLWFPGSSPPEWLDGSLPGDFGFDPLGLGSDPETLKWFAQAELMHARWAMLAVAGILLPE 120
           PLWFPGSSPPEWLDGSLPGDFGFDPLGLGSDPETLKWFAQAELMHARWAMLAVAGILLPE
Sbjct: 61  PLWFPGSSPPEWLDGSLPGDFGFDPLGLGSDPETLKWFAQAELMHARWAMLAVAGILLPE 120

Query: 121 WFESLGLIQNFSWYDAGSREYFADPTTLLVAQLALMGWVEGRRWADLVNPGSVDVDLKLP 180
           WFESLGLIQNFSWYDAGSREYFADPTTLLVAQLALMGWVEGRRWADLVNPGSVDVDLKLP
Sbjct: 121 WFESLGLIQNFSWYDAGSREYFADPTTLLVAQLALMGWVEGRRWADLVNPGSVDVDLKLP 180

Query: 181 HKKKAKADVGYPGGFWFDPMMWGRGSPEPVMVLRTKEIKNGRLAMLAFVGLWFQAIYTGQ 240
           HKKK KADVGYPGGFWFDPMMWGRGSPEPVMVLRTKEIKNGRLAMLAFVGLWFQAIYTGQ
Sbjct: 181 HKKKVKADVGYPGGFWFDPMMWGRGSPEPVMVLRTKEIKNGRLAMLAFVGLWFQAIYTGQ 240

Query: 241 GPLENLAAHVADPGHCNIFS 261
           GPLENLAAHVADPGHCNIFS
Sbjct: 241 GPLENLAAHVADPGHCNIFS 258

[Close]

BLAST of CsaV3_1G041230 vs. NCBI nr
Match: XP_022967968.1 (photosystem I chlorophyll a/b-binding protein 6, chloroplastic isoform X2 [Cucurbita maxima])

HSP 1 Score: 505.4 bits (1300), Expect = 3.1e-139
Identity = 241/268 (89.93%), Postives = 246/268 (91.79%), Query Frame = 0


Query: 1   MALSISSTATALSSFPIRDSYHRS---NFPGNFPNHKLRRDYSDLKAAKSGVSSVCEPLP 60
           MALSISS  TALSS PIR+S H     NFPG FP + LRR  S L AAKSGVSSVCEPLP
Sbjct: 17  MALSISS--TALSSLPIRESSHSHRALNFPGKFPKYNLRRGSSHLNAAKSGVSSVCEPLP 76

Query: 61  PDRPLWFPGSSPPEWLDGSLPGDFGFDPLGLGSDPETLKWFAQAELMHARWAMLAVAGIL 120
           PDRPLWFPGS+PPEWLDGSLPGDFGFDPLGLGSDPE LKWFAQAELMHARWAMLAVAGIL
Sbjct: 77  PDRPLWFPGSTPPEWLDGSLPGDFGFDPLGLGSDPELLKWFAQAELMHARWAMLAVAGIL 136

Query: 121 LPEWFESLGLIQNFSWYDAGSREYFADPTTLLVAQLALMGWVEGRRWADLVNPGSVDVDL 180
           LPEWFESLGLIQNFSWYDAG+REYFADPTTLLVAQL LMGWVEGRRWAD+VNPG VDVDL
Sbjct: 137 LPEWFESLGLIQNFSWYDAGTREYFADPTTLLVAQLGLMGWVEGRRWADMVNPGCVDVDL 196

Query: 181 KLPHKKKAKADVGYPGGFWFDPMMWGRGSPEPVMVLRTKEIKNGRLAMLAFVGLWFQAIY 240
           KLPHKKK   DVGYPGGFWFDPMMWGRGSPEPVMVLRTKEIKNGRLAMLAFVGLWFQAIY
Sbjct: 197 KLPHKKKPTPDVGYPGGFWFDPMMWGRGSPEPVMVLRTKEIKNGRLAMLAFVGLWFQAIY 256

Query: 241 TGQGPLENLAAHVADPGHCNIFSAFSSG 266
           TGQGPLENLAAHVADPGHCNIFSAFSSG
Sbjct: 257 TGQGPLENLAAHVADPGHCNIFSAFSSG 282

[Close]

BLAST of CsaV3_1G041230 vs. NCBI nr
Match: XP_022929243.1 (photosystem I chlorophyll a/b-binding protein 6, chloroplastic isoform X2 [Cucurbita moschata])

HSP 1 Score: 505.0 bits (1299), Expect = 4.0e-139
Identity = 241/269 (89.59%), Postives = 250/269 (92.94%), Query Frame = 0


Query: 1   MALSISSTATALSSFPIRD---SYHRS-NFPGNFPNHKLRRDYSDLKAAKSGVSSVCEPL 60
           MALSISS  TALS+ PIR+   S+HR+ NFPG FP + LRR  + L AAKSGVSSVCEPL
Sbjct: 1   MALSISS--TALSTLPIRESSHSHHRALNFPGKFPKYNLRRGSTHLNAAKSGVSSVCEPL 60

Query: 61  PPDRPLWFPGSSPPEWLDGSLPGDFGFDPLGLGSDPETLKWFAQAELMHARWAMLAVAGI 120
           PPDRPLWFPGS+PPEWLDGSLPGDFGFDPLGLGSDPE LKWFAQAELMHARWAMLAVAGI
Sbjct: 61  PPDRPLWFPGSTPPEWLDGSLPGDFGFDPLGLGSDPELLKWFAQAELMHARWAMLAVAGI 120

Query: 121 LLPEWFESLGLIQNFSWYDAGSREYFADPTTLLVAQLALMGWVEGRRWADLVNPGSVDVD 180
           LLPEWFESLGLIQNFSWYDAG+REYFADPTTLLVAQL LMGWVEGRRWAD+VNPGSVDVD
Sbjct: 121 LLPEWFESLGLIQNFSWYDAGTREYFADPTTLLVAQLGLMGWVEGRRWADMVNPGSVDVD 180

Query: 181 LKLPHKKKAKADVGYPGGFWFDPMMWGRGSPEPVMVLRTKEIKNGRLAMLAFVGLWFQAI 240
           LKLPHKKK   DVGYPGGFWFDPMMWGRGSPEPVMVLRTKEIKNGRLAMLAFVGLWFQAI
Sbjct: 181 LKLPHKKKPTPDVGYPGGFWFDPMMWGRGSPEPVMVLRTKEIKNGRLAMLAFVGLWFQAI 240

Query: 241 YTGQGPLENLAAHVADPGHCNIFSAFSSG 266
           YTGQGPLENLAAHVADPGHCNIFSAFSSG
Sbjct: 241 YTGQGPLENLAAHVADPGHCNIFSAFSSG 267

[Close]

BLAST of CsaV3_1G041230 vs. ExPASy Swiss-Prot
Match: Q8LCQ4 (Photosystem I chlorophyll a/b-binding protein 6, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=LHCA6 PE=1 SV=1)

HSP 1 Score: 400.2 bits (1027), Expect = 1.8e-110
Identity = 180/231 (77.92%), Postives = 198/231 (85.71%), Query Frame = 0


Query: 34  KLRRDYSDLKAAKSGVSSVCEPLPPDRPLWFPGSSPPEWLDGSLPGDFGFDPLGLGSDPE 93
           +L R+   +  A   VSSVCEPLPPDRPLWFPGSSPPEWLDGSLPGDFGFDPLGLGSDP+
Sbjct: 39  RLMRERLVVVRAGKEVSSVCEPLPPDRPLWFPGSSPPEWLDGSLPGDFGFDPLGLGSDPD 98

Query: 94  TLKWFAQAELMHARWAMLAVAGILLPEWFESLGLIQNFSWYDAGSREYFADPTTLLVAQL 153
           TLKWFAQAEL+H+RWAMLAV GI++PE  E LG I+NFSWYDAGSREYFAD TTL VAQ+
Sbjct: 99  TLKWFAQAELIHSRWAMLAVTGIIIPECLERLGFIENFSWYDAGSREYFADSTTLFVAQM 158

Query: 154 ALMGWVEGRRWADLVNPGSVDVDLKLPHKKKAKADVGYPGGFWFDPMMWGRGSPEPVMVL 213
            LMGW EGRRWADL+ PGSVD++ K PHK   K DVGYPGG WFD MMWGRGSPEPVMVL
Sbjct: 159 VLMGWAEGRRWADLIKPGSVDIEPKYPHKVNPKPDVGYPGGLWFDFMMWGRGSPEPVMVL 218

Query: 214 RTKEIKNGRLAMLAFVGLWFQAIYTGQGPLENLAAHVADPGHCNIFSAFSS 265
           RTKEIKNGRLAMLAF+G  FQA YT Q P+ENL AH+ADPGHCN+FSAF+S
Sbjct: 219 RTKEIKNGRLAMLAFLGFCFQATYTSQDPIENLMAHLADPGHCNVFSAFTS 269

[Close]

BLAST of CsaV3_1G041230 vs. ExPASy Swiss-Prot
Match: P13869 (Chlorophyll a-b binding protein, chloroplastic OS=Petunia hybrida OX=4102 PE=2 SV=1)

HSP 1 Score: 323.9 bits (829), Expect = 1.7e-87
Identity = 140/206 (67.96%), Postives = 163/206 (79.13%), Query Frame = 0


Query: 58  PDRPLWFPGSSPPEWLDGSLPGDFGFDPLGLGSDPETLKWFAQAELMHARWAMLAVAGIL 117
           PDRPLWFPGS+PPEWLDGSLPGDFGFDPLGLGSDPE+LKW AQAEL+H+RWAML  AGI 
Sbjct: 63  PDRPLWFPGSTPPEWLDGSLPGDFGFDPLGLGSDPESLKWNAQAELVHSRWAMLGAAGIF 122

Query: 118 LPEWFESLGLIQNFSWYDAGSREYFADPTTLLVAQLALMGWVEGRRWADLVNPGSVDVDL 177
           +PE+   +G++   SWY AG +EYF D TTL V +L L+GW EGRRWAD++ PG V+ D 
Sbjct: 123 IPEFLTKIGVLNTPSWYTAGEQEYFTDTTTLFVIELVLIGWAEGRRWADIIKPGCVNTDP 182

Query: 178 KLPHKKKAKADVGYPGGFWFDPMMWGRGSPEPVMVLRTKEIKNGRLAMLAFVGLWFQAIY 237
             P+ K    DVGYPGG WFDP+ WG GSP  +  LRTKEIKNGRLAMLA +G WFQ IY
Sbjct: 183 IFPNNKLTGTDVGYPGGLWFDPLGWGSGSPAKIKELRTKEIKNGRLAMLAVMGAWFQHIY 242

Query: 238 TGQGPLENLAAHVADPGHCNIFSAFS 264
           TG GP++NL AH+ADPGH  IF+AFS
Sbjct: 243 TGTGPIDNLFAHLADPGHATIFAAFS 268

[Close]

BLAST of CsaV3_1G041230 vs. ExPASy Swiss-Prot
Match: P10708 (Chlorophyll a-b binding protein 7, chloroplastic OS=Solanum lycopersicum OX=4081 GN=CAB7 PE=3 SV=1)

HSP 1 Score: 320.1 bits (819), Expect = 2.4e-86
Identity = 150/269 (55.76%), Postives = 182/269 (67.66%), Query Frame = 0


Query: 1   MALSISSTATALSSFPIRDSYHRSNFPGN-----FPNHKLR-RDYSDLKAAKSGVSSVCE 60
           MA + +S+  A  +F    S    +  G          +LR   YS    A+S  ++VC 
Sbjct: 1   MASACASSTIAAVAFSSPSSRRNGSIVGTTKASFLGGRRLRVSKYSTTPTARS-ATTVCV 60

Query: 61  PLPPDRPLWFPGSSPPEWLDGSLPGDFGFDPLGLGSDPETLKWFAQAELMHARWAMLAVA 120
              PDRPLWFPGS+PP WLDGSLPGDFGFDPLGL SDPE+L+W  QAEL+H RWAML  A
Sbjct: 61  AADPDRPLWFPGSTPPPWLDGSLPGDFGFDPLGLASDPESLRWNQQAELVHCRWAMLGAA 120

Query: 121 GILLPEWFESLGLIQNFSWYDAGSREYFADPTTLLVAQLALMGWVEGRRWADLVNPGSVD 180
           GI +PE    +G++   SWY AG +EYF D TTL + +L L+GW EGRRWAD++ PG V+
Sbjct: 121 GIFIPELLTKIGILNTPSWYTAGEQEYFTDTTTLFIVELVLIGWAEGRRWADIIKPGCVN 180

Query: 181 VDLKLPHKKKAKADVGYPGGFWFDPMMWGRGSPEPVMVLRTKEIKNGRLAMLAFVGLWFQ 240
            D   P+ K    DVGYPGG WFDP+ WG GSP  +  LRTKEIKNGRLAMLA +G WFQ
Sbjct: 181 TDPIFPNNKLTGTDVGYPGGLWFDPLGWGSGSPAKIKELRTKEIKNGRLAMLAVMGAWFQ 240

Query: 241 AIYTGQGPLENLAAHVADPGHCNIFSAFS 264
            IYTG GP++NL AH+ADPGH  IF+AFS
Sbjct: 241 HIYTGTGPIDNLFAHLADPGHATIFAAFS 268

[Close]

BLAST of CsaV3_1G041230 vs. ExPASy Swiss-Prot
Match: Q9SYW8 (Photosystem I chlorophyll a/b-binding protein 2, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=LHCA2 PE=1 SV=1)

HSP 1 Score: 317.8 bits (813), Expect = 1.2e-85
Identity = 135/206 (65.53%), Postives = 161/206 (78.16%), Query Frame = 0


Query: 58  PDRPLWFPGSSPPEWLDGSLPGDFGFDPLGLGSDPETLKWFAQAELMHARWAMLAVAGIL 117
           PDRP+WFPGS+PPEWLDGSLPGDFGFDPLGL SDP++LKW  QAE++H RWAML  AGI 
Sbjct: 50  PDRPIWFPGSTPPEWLDGSLPGDFGFDPLGLSSDPDSLKWNVQAEIVHCRWAMLGAAGIF 109

Query: 118 LPEWFESLGLIQNFSWYDAGSREYFADPTTLLVAQLALMGWVEGRRWADLVNPGSVDVDL 177
           +PE+   +G++   SWY AG +EYF D TTL V +L L+GW EGRRWAD++ PGSV+ D 
Sbjct: 110 IPEFLTKIGILNTPSWYTAGEQEYFTDKTTLFVVELILIGWAEGRRWADIIKPGSVNTDP 169

Query: 178 KLPHKKKAKADVGYPGGFWFDPMMWGRGSPEPVMVLRTKEIKNGRLAMLAFVGLWFQAIY 237
             P+ K    DVGYPGG WFDP+ WG GSP  +  LRTKEIKNGRLAMLA +G WFQ IY
Sbjct: 170 VFPNNKLTGTDVGYPGGLWFDPLGWGSGSPAKLKELRTKEIKNGRLAMLAVMGAWFQHIY 229

Query: 238 TGQGPLENLAAHVADPGHCNIFSAFS 264
           TG GP++NL AH+ADPGH  IF+AF+
Sbjct: 230 TGTGPIDNLFAHLADPGHATIFAAFT 255

[Close]

BLAST of CsaV3_1G041230 vs. ExPASy Swiss-Prot
Match: P27521 (Chlorophyll a-b binding protein 4, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=LHCA4 PE=1 SV=1)

HSP 1 Score: 214.5 bits (545), Expect = 1.4e-54
Identity = 109/230 (47.39%), Postives = 139/230 (60.43%), Query Frame = 0


Query: 34  KLRRDYSDLKAAKSGVSSVCEPLPPDRPLWFPGSSPPEWLDGSLPGDFGFDPLGLGSDPE 93
           +L RD S      S  +S  + +   +  W PG + P++L GSL GD GFDPLGL  DPE
Sbjct: 29  RLNRDLSFTSIGSSAKTSSFK-VEAKKGEWLPGLASPDYLTGSLAGDNGFDPLGLAEDPE 88

Query: 94  TLKWFAQAELMHARWAMLAVAGILLPEWFESLGLIQNFSWYDAGSREYFADPTTLLVAQL 153
            LKWF QAEL++ RWAML VAG+LLPE F  +G+I    WYDAG  +YFA  +TL V + 
Sbjct: 89  NLKWFVQAELVNGRWAMLGVAGMLLPEVFTKIGIINVPEWYDAGKEQYFASSSTLFVIEF 148

Query: 154 ALMGWVEGRRWADLVNPGSVDVDLKLPHKKKAKADVGYPGGFWFDPMMWGRGSPEPVMVL 213
            L  +VE RRW D+ NPGSV+ D         K +VGYPGG  F+P+ +      P    
Sbjct: 149 ILFHYVEIRRWQDIKNPGSVNQDPIFKQYSLPKGEVGYPGGI-FNPLNFA-----PTQEA 208

Query: 214 RTKEIKNGRLAMLAFVGLWFQAIYTGQGPLENLAAHVADPGHCNIFSAFS 264
           + KE+ NGRLAMLAF+G   Q   TG+GP ENL  H++DP H  I   F+
Sbjct: 209 KEKELANGRLAMLAFLGFVVQHNVTGKGPFENLLQHLSDPWHNTIVQTFN 251

[Close]

BLAST of CsaV3_1G041230 vs. ExPASy TrEMBL
Match: A0A0A0LX05 (Chlorophyll a-b binding protein, chloroplastic OS=Cucumis sativus OX=3659 GN=Csa_1G597160 PE=3 SV=1)

HSP 1 Score: 568.9 bits (1465), Expect = 1.1e-158
Identity = 267/267 (100.00%), Postives = 267/267 (100.00%), Query Frame = 0


Query: 1   MALSISSTATALSSFPIRDSYHRSNFPGNFPNHKLRRDYSDLKAAKSGVSSVCEPLPPDR 60
           MALSISSTATALSSFPIRDSYHRSNFPGNFPNHKLRRDYSDLKAAKSGVSSVCEPLPPDR
Sbjct: 1   MALSISSTATALSSFPIRDSYHRSNFPGNFPNHKLRRDYSDLKAAKSGVSSVCEPLPPDR 60

Query: 61  PLWFPGSSPPEWLDGSLPGDFGFDPLGLGSDPETLKWFAQAELMHARWAMLAVAGILLPE 120
           PLWFPGSSPPEWLDGSLPGDFGFDPLGLGSDPETLKWFAQAELMHARWAMLAVAGILLPE
Sbjct: 61  PLWFPGSSPPEWLDGSLPGDFGFDPLGLGSDPETLKWFAQAELMHARWAMLAVAGILLPE 120

Query: 121 WFESLGLIQNFSWYDAGSREYFADPTTLLVAQLALMGWVEGRRWADLVNPGSVDVDLKLP 180
           WFESLGLIQNFSWYDAGSREYFADPTTLLVAQLALMGWVEGRRWADLVNPGSVDVDLKLP
Sbjct: 121 WFESLGLIQNFSWYDAGSREYFADPTTLLVAQLALMGWVEGRRWADLVNPGSVDVDLKLP 180

Query: 181 HKKKAKADVGYPGGFWFDPMMWGRGSPEPVMVLRTKEIKNGRLAMLAFVGLWFQAIYTGQ 240
           HKKKAKADVGYPGGFWFDPMMWGRGSPEPVMVLRTKEIKNGRLAMLAFVGLWFQAIYTGQ
Sbjct: 181 HKKKAKADVGYPGGFWFDPMMWGRGSPEPVMVLRTKEIKNGRLAMLAFVGLWFQAIYTGQ 240

Query: 241 GPLENLAAHVADPGHCNIFSAFSSGSG 268
           GPLENLAAHVADPGHCNIFSAFSSGSG
Sbjct: 241 GPLENLAAHVADPGHCNIFSAFSSGSG 267

[Close]

BLAST of CsaV3_1G041230 vs. ExPASy TrEMBL
Match: A0A5A7UKU4 (Chlorophyll a-b binding protein, chloroplastic OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold181G001460 PE=3 SV=1)

HSP 1 Score: 551.6 bits (1420), Expect = 1.8e-153
Identity = 260/267 (97.38%), Postives = 263/267 (98.50%), Query Frame = 0


Query: 1   MALSISSTATALSSFPIRDSYHRSNFPGNFPNHKLRRDYSDLKAAKSGVSSVCEPLPPDR 60
           MALSISS  TALSSFPIR+S HR+NFPGNFPNHKLRRDYSDLKAAKSGVSSVCEPLPPDR
Sbjct: 1   MALSISS--TALSSFPIRESSHRANFPGNFPNHKLRRDYSDLKAAKSGVSSVCEPLPPDR 60

Query: 61  PLWFPGSSPPEWLDGSLPGDFGFDPLGLGSDPETLKWFAQAELMHARWAMLAVAGILLPE 120
           PLWFPGSSPPEWLDGSLPGDFGFDPLGLGSDPETLKWFAQAELMHARWAMLAVAGILLPE
Sbjct: 61  PLWFPGSSPPEWLDGSLPGDFGFDPLGLGSDPETLKWFAQAELMHARWAMLAVAGILLPE 120

Query: 121 WFESLGLIQNFSWYDAGSREYFADPTTLLVAQLALMGWVEGRRWADLVNPGSVDVDLKLP 180
           WFESLGLIQNFSWYDAGSREYFADPTTLLVAQLALMGWVEGRRWADLVNPGSVDVDLKLP
Sbjct: 121 WFESLGLIQNFSWYDAGSREYFADPTTLLVAQLALMGWVEGRRWADLVNPGSVDVDLKLP 180

Query: 181 HKKKAKADVGYPGGFWFDPMMWGRGSPEPVMVLRTKEIKNGRLAMLAFVGLWFQAIYTGQ 240
           HKKK KADVGYPGGFWFDPMMWGRGSPEPVMVLRTKEIKNGRLAMLAFVGLWFQAIYTGQ
Sbjct: 181 HKKKVKADVGYPGGFWFDPMMWGRGSPEPVMVLRTKEIKNGRLAMLAFVGLWFQAIYTGQ 240

Query: 241 GPLENLAAHVADPGHCNIFSAFSSGSG 268
           GPLENLAAHVADPGHCNIFSAF+SGSG
Sbjct: 241 GPLENLAAHVADPGHCNIFSAFTSGSG 265

[Close]

BLAST of CsaV3_1G041230 vs. ExPASy TrEMBL
Match: A0A1S3BQD6 (Chlorophyll a-b binding protein, chloroplastic OS=Cucumis melo OX=3656 GN=LOC103492384 PE=3 SV=1)

HSP 1 Score: 551.6 bits (1420), Expect = 1.8e-153
Identity = 260/267 (97.38%), Postives = 263/267 (98.50%), Query Frame = 0


Query: 1   MALSISSTATALSSFPIRDSYHRSNFPGNFPNHKLRRDYSDLKAAKSGVSSVCEPLPPDR 60
           MALSISS  TALSSFPIR+S HR+NFPGNFPNHKLRRDYSDLKAAKSGVSSVCEPLPPDR
Sbjct: 1   MALSISS--TALSSFPIRESSHRANFPGNFPNHKLRRDYSDLKAAKSGVSSVCEPLPPDR 60

Query: 61  PLWFPGSSPPEWLDGSLPGDFGFDPLGLGSDPETLKWFAQAELMHARWAMLAVAGILLPE 120
           PLWFPGSSPPEWLDGSLPGDFGFDPLGLGSDPETLKWFAQAELMHARWAMLAVAGILLPE
Sbjct: 61  PLWFPGSSPPEWLDGSLPGDFGFDPLGLGSDPETLKWFAQAELMHARWAMLAVAGILLPE 120

Query: 121 WFESLGLIQNFSWYDAGSREYFADPTTLLVAQLALMGWVEGRRWADLVNPGSVDVDLKLP 180
           WFESLGLIQNFSWYDAGSREYFADPTTLLVAQLALMGWVEGRRWADLVNPGSVDVDLKLP
Sbjct: 121 WFESLGLIQNFSWYDAGSREYFADPTTLLVAQLALMGWVEGRRWADLVNPGSVDVDLKLP 180

Query: 181 HKKKAKADVGYPGGFWFDPMMWGRGSPEPVMVLRTKEIKNGRLAMLAFVGLWFQAIYTGQ 240
           HKKK KADVGYPGGFWFDPMMWGRGSPEPVMVLRTKEIKNGRLAMLAFVGLWFQAIYTGQ
Sbjct: 181 HKKKVKADVGYPGGFWFDPMMWGRGSPEPVMVLRTKEIKNGRLAMLAFVGLWFQAIYTGQ 240

Query: 241 GPLENLAAHVADPGHCNIFSAFSSGSG 268
           GPLENLAAHVADPGHCNIFSAF+SGSG
Sbjct: 241 GPLENLAAHVADPGHCNIFSAFTSGSG 265

[Close]

BLAST of CsaV3_1G041230 vs. ExPASy TrEMBL
Match: A0A5D3CDV1 (Chlorophyll a-b binding protein, chloroplastic OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold16G001420 PE=3 SV=1)

HSP 1 Score: 540.4 bits (1391), Expect = 4.2e-150
Identity = 254/260 (97.69%), Postives = 256/260 (98.46%), Query Frame = 0


Query: 1   MALSISSTATALSSFPIRDSYHRSNFPGNFPNHKLRRDYSDLKAAKSGVSSVCEPLPPDR 60
           MALSISS  TALSSFPIR+S HR+NFPGNFPNHKLRRDYSDLKAAKSGVSSVCEPLPPDR
Sbjct: 1   MALSISS--TALSSFPIRESSHRANFPGNFPNHKLRRDYSDLKAAKSGVSSVCEPLPPDR 60

Query: 61  PLWFPGSSPPEWLDGSLPGDFGFDPLGLGSDPETLKWFAQAELMHARWAMLAVAGILLPE 120
           PLWFPGSSPPEWLDGSLPGDFGFDPLGLGSDPETLKWFAQAELMHARWAMLAVAGILLPE
Sbjct: 61  PLWFPGSSPPEWLDGSLPGDFGFDPLGLGSDPETLKWFAQAELMHARWAMLAVAGILLPE 120

Query: 121 WFESLGLIQNFSWYDAGSREYFADPTTLLVAQLALMGWVEGRRWADLVNPGSVDVDLKLP 180
           WFESLGLIQNFSWYDAGSREYFADPTTLLVAQLALMGWVEGRRWADLVNPGSVDVDLKLP
Sbjct: 121 WFESLGLIQNFSWYDAGSREYFADPTTLLVAQLALMGWVEGRRWADLVNPGSVDVDLKLP 180

Query: 181 HKKKAKADVGYPGGFWFDPMMWGRGSPEPVMVLRTKEIKNGRLAMLAFVGLWFQAIYTGQ 240
           HKKK KADVGYPGGFWFDPMMWGRGSPEPVMVLRTKEIKNGRLAMLAFVGLWFQAIYTGQ
Sbjct: 181 HKKKVKADVGYPGGFWFDPMMWGRGSPEPVMVLRTKEIKNGRLAMLAFVGLWFQAIYTGQ 240

Query: 241 GPLENLAAHVADPGHCNIFS 261
           GPLENLAAHVADPGHCNIFS
Sbjct: 241 GPLENLAAHVADPGHCNIFS 258

[Close]

BLAST of CsaV3_1G041230 vs. ExPASy TrEMBL
Match: A0A6J1HWP6 (Chlorophyll a-b binding protein, chloroplastic OS=Cucurbita maxima OX=3661 GN=LOC111467340 PE=3 SV=1)

HSP 1 Score: 505.4 bits (1300), Expect = 1.5e-139
Identity = 241/268 (89.93%), Postives = 246/268 (91.79%), Query Frame = 0


Query: 1   MALSISSTATALSSFPIRDSYHRS---NFPGNFPNHKLRRDYSDLKAAKSGVSSVCEPLP 60
           MALSISS  TALSS PIR+S H     NFPG FP + LRR  S L AAKSGVSSVCEPLP
Sbjct: 17  MALSISS--TALSSLPIRESSHSHRALNFPGKFPKYNLRRGSSHLNAAKSGVSSVCEPLP 76

Query: 61  PDRPLWFPGSSPPEWLDGSLPGDFGFDPLGLGSDPETLKWFAQAELMHARWAMLAVAGIL 120
           PDRPLWFPGS+PPEWLDGSLPGDFGFDPLGLGSDPE LKWFAQAELMHARWAMLAVAGIL
Sbjct: 77  PDRPLWFPGSTPPEWLDGSLPGDFGFDPLGLGSDPELLKWFAQAELMHARWAMLAVAGIL 136

Query: 121 LPEWFESLGLIQNFSWYDAGSREYFADPTTLLVAQLALMGWVEGRRWADLVNPGSVDVDL 180
           LPEWFESLGLIQNFSWYDAG+REYFADPTTLLVAQL LMGWVEGRRWAD+VNPG VDVDL
Sbjct: 137 LPEWFESLGLIQNFSWYDAGTREYFADPTTLLVAQLGLMGWVEGRRWADMVNPGCVDVDL 196

Query: 181 KLPHKKKAKADVGYPGGFWFDPMMWGRGSPEPVMVLRTKEIKNGRLAMLAFVGLWFQAIY 240
           KLPHKKK   DVGYPGGFWFDPMMWGRGSPEPVMVLRTKEIKNGRLAMLAFVGLWFQAIY
Sbjct: 197 KLPHKKKPTPDVGYPGGFWFDPMMWGRGSPEPVMVLRTKEIKNGRLAMLAFVGLWFQAIY 256

Query: 241 TGQGPLENLAAHVADPGHCNIFSAFSSG 266
           TGQGPLENLAAHVADPGHCNIFSAFSSG
Sbjct: 257 TGQGPLENLAAHVADPGHCNIFSAFSSG 282

[Close]

BLAST of CsaV3_1G041230 vs. TAIR 10
Match: AT1G19150.1 (photosystem I light harvesting complex gene 6 )

HSP 1 Score: 400.2 bits (1027), Expect = 1.3e-111
Identity = 180/231 (77.92%), Postives = 198/231 (85.71%), Query Frame = 0


Query: 34  KLRRDYSDLKAAKSGVSSVCEPLPPDRPLWFPGSSPPEWLDGSLPGDFGFDPLGLGSDPE 93
           +L R+   +  A   VSSVCEPLPPDRPLWFPGSSPPEWLDGSLPGDFGFDPLGLGSDP+
Sbjct: 39  RLMRERLVVVRAGKEVSSVCEPLPPDRPLWFPGSSPPEWLDGSLPGDFGFDPLGLGSDPD 98

Query: 94  TLKWFAQAELMHARWAMLAVAGILLPEWFESLGLIQNFSWYDAGSREYFADPTTLLVAQL 153
           TLKWFAQAEL+H+RWAMLAV GI++PE  E LG I+NFSWYDAGSREYFAD TTL VAQ+
Sbjct: 99  TLKWFAQAELIHSRWAMLAVTGIIIPECLERLGFIENFSWYDAGSREYFADSTTLFVAQM 158

Query: 154 ALMGWVEGRRWADLVNPGSVDVDLKLPHKKKAKADVGYPGGFWFDPMMWGRGSPEPVMVL 213
            LMGW EGRRWADL+ PGSVD++ K PHK   K DVGYPGG WFD MMWGRGSPEPVMVL
Sbjct: 159 VLMGWAEGRRWADLIKPGSVDIEPKYPHKVNPKPDVGYPGGLWFDFMMWGRGSPEPVMVL 218

Query: 214 RTKEIKNGRLAMLAFVGLWFQAIYTGQGPLENLAAHVADPGHCNIFSAFSS 265
           RTKEIKNGRLAMLAF+G  FQA YT Q P+ENL AH+ADPGHCN+FSAF+S
Sbjct: 219 RTKEIKNGRLAMLAFLGFCFQATYTSQDPIENLMAHLADPGHCNVFSAFTS 269

[Close]

BLAST of CsaV3_1G041230 vs. TAIR 10
Match: AT3G61470.1 (photosystem I light harvesting complex gene 2 )

HSP 1 Score: 317.8 bits (813), Expect = 8.5e-87
Identity = 135/206 (65.53%), Postives = 161/206 (78.16%), Query Frame = 0


Query: 58  PDRPLWFPGSSPPEWLDGSLPGDFGFDPLGLGSDPETLKWFAQAELMHARWAMLAVAGIL 117
           PDRP+WFPGS+PPEWLDGSLPGDFGFDPLGL SDP++LKW  QAE++H RWAML  AGI 
Sbjct: 50  PDRPIWFPGSTPPEWLDGSLPGDFGFDPLGLSSDPDSLKWNVQAEIVHCRWAMLGAAGIF 109

Query: 118 LPEWFESLGLIQNFSWYDAGSREYFADPTTLLVAQLALMGWVEGRRWADLVNPGSVDVDL 177
           +PE+   +G++   SWY AG +EYF D TTL V +L L+GW EGRRWAD++ PGSV+ D 
Sbjct: 110 IPEFLTKIGILNTPSWYTAGEQEYFTDKTTLFVVELILIGWAEGRRWADIIKPGSVNTDP 169

Query: 178 KLPHKKKAKADVGYPGGFWFDPMMWGRGSPEPVMVLRTKEIKNGRLAMLAFVGLWFQAIY 237
             P+ K    DVGYPGG WFDP+ WG GSP  +  LRTKEIKNGRLAMLA +G WFQ IY
Sbjct: 170 VFPNNKLTGTDVGYPGGLWFDPLGWGSGSPAKLKELRTKEIKNGRLAMLAVMGAWFQHIY 229

Query: 238 TGQGPLENLAAHVADPGHCNIFSAFS 264
           TG GP++NL AH+ADPGH  IF+AF+
Sbjct: 230 TGTGPIDNLFAHLADPGHATIFAAFT 255

[Close]

BLAST of CsaV3_1G041230 vs. TAIR 10
Match: AT3G47470.1 (light-harvesting chlorophyll-protein complex I subunit A4 )

HSP 1 Score: 214.5 bits (545), Expect = 1.0e-55
Identity = 109/230 (47.39%), Postives = 139/230 (60.43%), Query Frame = 0


Query: 34  KLRRDYSDLKAAKSGVSSVCEPLPPDRPLWFPGSSPPEWLDGSLPGDFGFDPLGLGSDPE 93
           +L RD S      S  +S  + +   +  W PG + P++L GSL GD GFDPLGL  DPE
Sbjct: 29  RLNRDLSFTSIGSSAKTSSFK-VEAKKGEWLPGLASPDYLTGSLAGDNGFDPLGLAEDPE 88

Query: 94  TLKWFAQAELMHARWAMLAVAGILLPEWFESLGLIQNFSWYDAGSREYFADPTTLLVAQL 153
            LKWF QAEL++ RWAML VAG+LLPE F  +G+I    WYDAG  +YFA  +TL V + 
Sbjct: 89  NLKWFVQAELVNGRWAMLGVAGMLLPEVFTKIGIINVPEWYDAGKEQYFASSSTLFVIEF 148

Query: 154 ALMGWVEGRRWADLVNPGSVDVDLKLPHKKKAKADVGYPGGFWFDPMMWGRGSPEPVMVL 213
            L  +VE RRW D+ NPGSV+ D         K +VGYPGG  F+P+ +      P    
Sbjct: 149 ILFHYVEIRRWQDIKNPGSVNQDPIFKQYSLPKGEVGYPGGI-FNPLNFA-----PTQEA 208

Query: 214 RTKEIKNGRLAMLAFVGLWFQAIYTGQGPLENLAAHVADPGHCNIFSAFS 264
           + KE+ NGRLAMLAF+G   Q   TG+GP ENL  H++DP H  I   F+
Sbjct: 209 KEKELANGRLAMLAFLGFVVQHNVTGKGPFENLLQHLSDPWHNTIVQTFN 251

[Close]

BLAST of CsaV3_1G041230 vs. TAIR 10
Match: AT1G45474.1 (photosystem I light harvesting complex gene 5 )

HSP 1 Score: 188.0 bits (476), Expect = 1.0e-47
Identity = 104/255 (40.78%), Postives = 151/255 (59.22%), Query Frame = 0


Query: 23  RSNFPGNFPNHK------LRRDYSDLKAAKSGVSSVCEPLPPDRPLWFPGSSPPEWLDGS 82
           R    G F +H+      + R  S +KAA  G++     +  +R  W PG +PP +LDG+
Sbjct: 6   RGGITGGFLHHRRDASSVITRRISSVKAAGGGINPT---VAVERATWLPGLNPPPYLDGN 65

Query: 83  LPGDFGFDPLGLGSDPETLKWFAQAELMHARWAMLAVAGILLPEWFESLGLIQNFSWYDA 142
           L GD+GFDPLGLG DPE+LKW+ QAEL+H+R+AML VAGIL  +   + G+     WY+A
Sbjct: 66  LAGDYGFDPLGLGEDPESLKWYVQAELVHSRFAMLGVAGILFTDLLRTTGIRNLPVWYEA 125

Query: 143 GSREY-FADPTTLLVAQLALMGWVEGRRWADLVNPGSVDVDLKLPHKKKAK---ADVGYP 202
           G+ ++ FA   TL+V Q  LMG+ E +R+ D V+PGS   +       +A     + GYP
Sbjct: 126 GAVKFDFASTKTLIVVQFLLMGFAETKRYMDFVSPGSQAKEGSFFFGLEAALEGLEPGYP 185

Query: 203 GGFWFDPMMWGRGSPEPVMVLRTKEIKNGRLAMLAFVGLWFQAIYTGQGPLENLAAHVAD 262
           GG   +P+   +   +     + KEIKNGRLAM+A +G + QA  T  GP++NL  H+++
Sbjct: 186 GGPLLNPLGLAK-DVQNAHDWKLKEIKNGRLAMMAMLGFFVQASVTHTGPIDNLVEHLSN 245

Query: 263 PGHCNIF-SAFSSGS 267
           P H  I  + F+S S
Sbjct: 246 PWHKTIIQTLFTSTS 256

[Close]

BLAST of CsaV3_1G041230 vs. TAIR 10
Match: AT1G45474.2 (photosystem I light harvesting complex gene 5 )

HSP 1 Score: 188.0 bits (476), Expect = 1.0e-47
Identity = 104/255 (40.78%), Postives = 151/255 (59.22%), Query Frame = 0


Query: 23  RSNFPGNFPNHK------LRRDYSDLKAAKSGVSSVCEPLPPDRPLWFPGSSPPEWLDGS 82
           R    G F +H+      + R  S +KAA  G++     +  +R  W PG +PP +LDG+
Sbjct: 6   RGGITGGFLHHRRDASSVITRRISSVKAAGGGINPT---VAVERATWLPGLNPPPYLDGN 65

Query: 83  LPGDFGFDPLGLGSDPETLKWFAQAELMHARWAMLAVAGILLPEWFESLGLIQNFSWYDA 142
           L GD+GFDPLGLG DPE+LKW+ QAEL+H+R+AML VAGIL  +   + G+     WY+A
Sbjct: 66  LAGDYGFDPLGLGEDPESLKWYVQAELVHSRFAMLGVAGILFTDLLRTTGIRNLPVWYEA 125

Query: 143 GSREY-FADPTTLLVAQLALMGWVEGRRWADLVNPGSVDVDLKLPHKKKAK---ADVGYP 202
           G+ ++ FA   TL+V Q  LMG+ E +R+ D V+PGS   +       +A     + GYP
Sbjct: 126 GAVKFDFASTKTLIVVQFLLMGFAETKRYMDFVSPGSQAKEGSFFFGLEAALEGLEPGYP 185

Query: 203 GGFWFDPMMWGRGSPEPVMVLRTKEIKNGRLAMLAFVGLWFQAIYTGQGPLENLAAHVAD 262
           GG   +P+   +   +     + KEIKNGRLAM+A +G + QA  T  GP++NL  H+++
Sbjct: 186 GGPLLNPLGLAK-DVQNAHDWKLKEIKNGRLAMMAMLGFFVQASVTHTGPIDNLVEHLSN 245

Query: 263 PGHCNIF-SAFSSGS 267
           P H  I  + F+S S
Sbjct: 246 PWHKTIIQTLFTSTS 256

The following BLAST results are available for this feature:

BLAST of CsaV3_1G041230 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_004144043.1	2.3e-158	100.00	photosystem I chlorophyll a/b-binding protein 6, chloroplastic [Cucumis sativus]...	[more]
XP_008450947.1	3.8e-153	97.38	PREDICTED: photosystem I chlorophyll a/b-binding protein 6, chloroplastic [Cucum...	[more]
TYK10011.1	8.6e-150	97.69	photosystem I chlorophyll a/b-binding protein 6 [Cucumis melo var. makuwa]	[more]
XP_022967968.1	3.1e-139	89.93	photosystem I chlorophyll a/b-binding protein 6, chloroplastic isoform X2 [Cucur...	[more]
XP_022929243.1	4.0e-139	89.59	photosystem I chlorophyll a/b-binding protein 6, chloroplastic isoform X2 [Cucur...	[more]

BLAST of CsaV3_1G041230 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q8LCQ4	1.8e-110	77.92	Photosystem I chlorophyll a/b-binding protein 6, chloroplastic OS=Arabidopsis th...	[more]
P13869	1.7e-87	67.96	Chlorophyll a-b binding protein, chloroplastic OS=Petunia hybrida OX=4102 PE=2 S...	[more]
P10708	2.4e-86	55.76	Chlorophyll a-b binding protein 7, chloroplastic OS=Solanum lycopersicum OX=4081...	[more]
Q9SYW8	1.2e-85	65.53	Photosystem I chlorophyll a/b-binding protein 2, chloroplastic OS=Arabidopsis th...	[more]
P27521	1.4e-54	47.39	Chlorophyll a-b binding protein 4, chloroplastic OS=Arabidopsis thaliana OX=3702...	[more]

BLAST of CsaV3_1G041230 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0LX05	1.1e-158	100.00	Chlorophyll a-b binding protein, chloroplastic OS=Cucumis sativus OX=3659 GN=Csa...	[more]
A0A5A7UKU4	1.8e-153	97.38	Chlorophyll a-b binding protein, chloroplastic OS=Cucumis melo var. makuwa OX=11...	[more]
A0A1S3BQD6	1.8e-153	97.38	Chlorophyll a-b binding protein, chloroplastic OS=Cucumis melo OX=3656 GN=LOC103...	[more]
A0A5D3CDV1	4.2e-150	97.69	Chlorophyll a-b binding protein, chloroplastic OS=Cucumis melo var. makuwa OX=11...	[more]
A0A6J1HWP6	1.5e-139	89.93	Chlorophyll a-b binding protein, chloroplastic OS=Cucurbita maxima OX=3661 GN=LO...	[more]

BLAST of CsaV3_1G041230 vs. TAIR 10


Match Name	E-value	Identity	Description
AT1G19150.1	1.3e-111	77.92	photosystem I light harvesting complex gene 6	[more]
AT3G61470.1	8.5e-87	65.53	photosystem I light harvesting complex gene 2	[more]
AT3G47470.1	1.0e-55	47.39	light-harvesting chlorophyll-protein complex I subunit A4	[more]
AT1G45474.1	1.0e-47	40.78	photosystem I light harvesting complex gene 5	[more]
AT1G45474.2	1.0e-47	40.78	photosystem I light harvesting complex gene 5	[more]

InterPro

Analysis Name: InterPro Annotations of Cucumber (Chinese Long) v3
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR023329	Chlorophyll a/b binding domain superfamily	GENE3D	1.10.3460.10	Chlorophyll a/b binding protein domain	coord: 70..255 e-value: 9.2E-70 score: 236.4
IPR022796	Chlorophyll A-B binding protein	PFAM	PF00504	Chloroa_b-bind	coord: 69..235 e-value: 3.5E-53 score: 180.4
None	No IPR available	PANTHER	PTHR21649:SF5	PHOTOSYSTEM I CHLOROPHYLL A/B-BINDING PROTEIN 6, CHLOROPLASTIC	coord: 1..262
None	No IPR available	SUPERFAMILY	103511	Chlorophyll a-b binding protein	coord: 59..262
IPR001344	Chlorophyll A-B binding protein, plant and chromista	PANTHER	PTHR21649	CHLOROPHYLL A/B BINDING PROTEIN	coord: 1..262

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CsaV3_1G041230.1	CsaV3_1G041230.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0009765	photosynthesis, light harvesting
cellular_component	GO:0016020	membrane