CsaV3_1G040790 (gene) Cucumber (Chinese Long) v3

Overview


Name	CsaV3_1G040790
Type	gene
Organism	Cucumis sativus L. var. sativus cv. Chinese Long (Cucumber (Chinese Long) v3)
Description	RING-type E3 ubiquitin transferase
Location	chr1: 25992638 .. 25993138 (-)
RNA-Seq Expression	CsaV3_1G040790
Synteny	CsaV3_1G040790

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGAGCGATTCTTCTACTTCTACTTCTACCCCTCATCCTGCAAAATCAAGCTTACCCATGTTGTATTATGGCCTTGTCGTTGTCGGAACGGCGGCGATTGTCTTAGTTCTCTACAATTTCATCGTTATCAAGTGGTGCTCAGACAACCGCCACCGCCGTCGGATGGCTGGAAGTTACGAGGAGATGATGAATTCAAGCCGTAGCTTCCAGAGCTCCTTGAGCAGCTTCAAATTCAAGAAGGTGGCGGGGGCGGGGGCGGAAGAAGGGAATGGGAATGAATGTGCAGTTTGTTTGTCAGCGTTTGAGGATGGTGAAGAGGTTAAGAAATTGCCGAGATGTACACATACGTTTCATGCTTCTTGTATAGATATGTGGCTTTATTCTCACTCCGATTGCCCACTCTGCCGTGCTCCGGTGGCGGTGGCAGTGGCGGGGCGGAGCCGACACGAAGCCACCGCGGAGCAAGAGGAGAATTCAGGTCATGTGTTGTTGGAGGTTTGA

mRNA sequence

ATGAGCGATTCTTCTACTTCTACTTCTACCCCTCATCCTGCAAAATCAAGCTTACCCATGTTGTATTATGGCCTTGTCGTTGTCGGAACGGCGGCGATTGTCTTAGTTCTCTACAATTTCATCGTTATCAAGTGGTGCTCAGACAACCGCCACCGCCGTCGGATGGCTGGAAGTTACGAGGAGATGATGAATTCAAGCCGTAGCTTCCAGAGCTCCTTGAGCAGCTTCAAATTCAAGAAGGTGGCGGGGGCGGGGGCGGAAGAAGGGAATGGGAATGAATGTGCAGTTTGTTTGTCAGCGTTTGAGGATGGTGAAGAGGTTAAGAAATTGCCGAGATGTACACATACGTTTCATGCTTCTTGTATAGATATGTGGCTTTATTCTCACTCCGATTGCCCACTCTGCCGTGCTCCGGTGGCGGTGGCAGTGGCGGGGCGGAGCCGACACGAAGCCACCGCGGAGCAAGAGGAGAATTCAGGTCATGTGTTGTTGGAGGTTTGA

Coding sequence (CDS)

ATGAGCGATTCTTCTACTTCTACTTCTACCCCTCATCCTGCAAAATCAAGCTTACCCATGTTGTATTATGGCCTTGTCGTTGTCGGAACGGCGGCGATTGTCTTAGTTCTCTACAATTTCATCGTTATCAAGTGGTGCTCAGACAACCGCCACCGCCGTCGGATGGCTGGAAGTTACGAGGAGATGATGAATTCAAGCCGTAGCTTCCAGAGCTCCTTGAGCAGCTTCAAATTCAAGAAGGTGGCGGGGGCGGGGGCGGAAGAAGGGAATGGGAATGAATGTGCAGTTTGTTTGTCAGCGTTTGAGGATGGTGAAGAGGTTAAGAAATTGCCGAGATGTACACATACGTTTCATGCTTCTTGTATAGATATGTGGCTTTATTCTCACTCCGATTGCCCACTCTGCCGTGCTCCGGTGGCGGTGGCAGTGGCGGGGCGGAGCCGACACGAAGCCACCGCGGAGCAAGAGGAGAATTCAGGTCATGTGTTGTTGGAGGTTTGA

Protein sequence

MSDSSTSTSTPHPAKSSLPMLYYGLVVVGTAAIVLVLYNFIVIKWCSDNRHRRRMAGSYEEMMNSSRSFQSSLSSFKFKKVAGAGAEEGNGNECAVCLSAFEDGEEVKKLPRCTHTFHASCIDMWLYSHSDCPLCRAPVAVAVAGRSRHEATAEQEENSGHVLLEV*

Homology

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BLAST of CsaV3_1G040790 vs. NCBI nr
Match: XP_004144121.1 (RING-H2 finger protein ATL39 [Cucumis sativus] >KGN66278.1 hypothetical protein Csa_007702 [Cucumis sativus])

HSP 1 Score: 333.6 bits (854), Expect = 1.0e-87
Identity = 166/166 (100.00%), Postives = 166/166 (100.00%), Query Frame = 0


Query: 1   MSDSSTSTSTPHPAKSSLPMLYYGLVVVGTAAIVLVLYNFIVIKWCSDNRHRRRMAGSYE 60
           MSDSSTSTSTPHPAKSSLPMLYYGLVVVGTAAIVLVLYNFIVIKWCSDNRHRRRMAGSYE
Sbjct: 1   MSDSSTSTSTPHPAKSSLPMLYYGLVVVGTAAIVLVLYNFIVIKWCSDNRHRRRMAGSYE 60

Query: 61  EMMNSSRSFQSSLSSFKFKKVAGAGAEEGNGNECAVCLSAFEDGEEVKKLPRCTHTFHAS 120
           EMMNSSRSFQSSLSSFKFKKVAGAGAEEGNGNECAVCLSAFEDGEEVKKLPRCTHTFHAS
Sbjct: 61  EMMNSSRSFQSSLSSFKFKKVAGAGAEEGNGNECAVCLSAFEDGEEVKKLPRCTHTFHAS 120

Query: 121 CIDMWLYSHSDCPLCRAPVAVAVAGRSRHEATAEQEENSGHVLLEV 167
           CIDMWLYSHSDCPLCRAPVAVAVAGRSRHEATAEQEENSGHVLLEV
Sbjct: 121 CIDMWLYSHSDCPLCRAPVAVAVAGRSRHEATAEQEENSGHVLLEV 166

[Close]

BLAST of CsaV3_1G040790 vs. NCBI nr
Match: XP_008450904.1 (PREDICTED: RING-H2 finger protein ATL52-like [Cucumis melo] >KAA0055794.1 RING-H2 finger protein ATL52-like [Cucumis melo var. makuwa] >TYK10045.1 RING-H2 finger protein ATL52-like [Cucumis melo var. makuwa])

HSP 1 Score: 289.7 bits (740), Expect = 1.7e-74
Identity = 154/169 (91.12%), Postives = 156/169 (92.31%), Query Frame = 0


Query: 1   MSDSSTSTSTPHPAKSSLPMLYYGLVVVGTAAIVLVLYNFIVIKWCSDNRHRRRMAGSYE 60
           MSDS  STSTPHPAKSSLPMLYYGLVVVGTAAIVLVLYNFIVIKWCSD+RHRRRMA SYE
Sbjct: 1   MSDS--STSTPHPAKSSLPMLYYGLVVVGTAAIVLVLYNFIVIKWCSDSRHRRRMAVSYE 60

Query: 61  EMMNSSRSFQSSLSSFKFKKVAG--AGAEEGNGNECAVCLSAFEDGEEVKKLPRCTHTFH 120
           EMMNSSRSFQSSLSSFKFKKVA   A AEEGNGNECAVCLSAFEDGEEVKKLPRCTHTFH
Sbjct: 61  EMMNSSRSFQSSLSSFKFKKVAAATATAEEGNGNECAVCLSAFEDGEEVKKLPRCTHTFH 120

Query: 121 ASCIDMWLYSHSDCPLCRAPVAVAVAGRSRHE-ATAEQEENSGHVLLEV 167
           ASCIDMWLYSHSDCPLCRAP  VAV G SRHE  TAEQ+ENSGHVLLEV
Sbjct: 121 ASCIDMWLYSHSDCPLCRAP--VAVPGVSRHETTTAEQDENSGHVLLEV 165

[Close]

BLAST of CsaV3_1G040790 vs. NCBI nr
Match: XP_038879803.1 (RING-H2 finger protein ATL39-like [Benincasa hispida])

HSP 1 Score: 260.0 bits (663), Expect = 1.4e-65
Identity = 138/175 (78.86%), Postives = 146/175 (83.43%), Query Frame = 0


Query: 1   MSDSSTST---STPHPAKSSLPMLYYGLVVVGTAAIVLVLYNFIVIKWCSDNRHRR---R 60
           MSDSS+++    TPHPAKSSLPMLYYGLVVVGTAAIVLVLYNFIVIKWCSDNRHRR    
Sbjct: 1   MSDSSSTSFAQPTPHPAKSSLPMLYYGLVVVGTAAIVLVLYNFIVIKWCSDNRHRRASPA 60

Query: 61  MAGSYEEMMNSSRSFQSSLSSFKFKK----VAGAGAEEGNGNECAVCLSAFEDGEEVKKL 120
           +AGSY EMMNSSRSF SSL SFKFKK     A A  EEG GNECAVCLSAFEDG+EVKKL
Sbjct: 61  LAGSYAEMMNSSRSFHSSLCSFKFKKGSTVAAAAAEEEGYGNECAVCLSAFEDGDEVKKL 120

Query: 121 PRCTHTFHASCIDMWLYSHSDCPLCRAPVAVAVAGRSRHEATAEQEENSGHVLLE 166
           PRCTH FHASCIDMWL+SHSDCPLCRAP  V   G S+H+A AEQEENSGH LLE
Sbjct: 121 PRCTHMFHASCIDMWLFSHSDCPLCRAP--VVAQGLSQHQAMAEQEENSGHGLLE 173

[Close]

BLAST of CsaV3_1G040790 vs. NCBI nr
Match: XP_022147740.1 (E3 ubiquitin-protein ligase EL5-like [Momordica charantia])

HSP 1 Score: 232.3 bits (591), Expect = 3.1e-57
Identity = 130/180 (72.22%), Postives = 139/180 (77.22%), Query Frame = 0


Query: 1   MSDSSTSTS-----TPHPAKSSLPMLYYGLVVVGTAAIVLVLYNFIVIKWCSDNRHRRR- 60
           M DS +S++     TPHPAKSSLPMLYYGLVVVGTAAIVLV+YNFIVI+WCSD R R   
Sbjct: 1   MVDSYSSSTPFTQPTPHPAKSSLPMLYYGLVVVGTAAIVLVVYNFIVIRWCSDRRGRGSP 60

Query: 61  -MAGSYEEMMNSSRSFQSS----LSSFKFKK----VAGAGAEEGNGNECAVCLSAFEDGE 120
            MA SY EMM+SS SFQSS    LSSF+FKK     A    EEGNG ECAVCLSAFEDGE
Sbjct: 61  GMARSYAEMMSSSGSFQSSSRNLLSSFRFKKGTKAAAATAEEEGNGLECAVCLSAFEDGE 120

Query: 121 EVKKLPRCTHTFHASCIDMWLYSHSDCPLCRAPVAVAVAGRSRHEATAEQEENSGHVLLE 166
           EVKKLPRCTH FHA CIDMWLYSHSDCPLCRAPVA+A  G  +H   AEQ ENSGH LLE
Sbjct: 121 EVKKLPRCTHMFHAPCIDMWLYSHSDCPLCRAPVALA-PGLCQHHTAAEQPENSGHGLLE 179

[Close]

BLAST of CsaV3_1G040790 vs. NCBI nr
Match: XP_022968369.1 (RING-H2 finger protein ATL52-like [Cucurbita maxima])

HSP 1 Score: 227.6 bits (579), Expect = 7.7e-56
Identity = 127/181 (70.17%), Postives = 139/181 (76.80%), Query Frame = 0


Query: 1   MSDSST---STSTPHPAKSSLPMLYYGLVVVGTAAIVLVLYNFIVIKWCSDNRHRR---R 60
           M DS++   +  T HPAKSSLPMLYYGLVV+GTA IVLVLYN I+IKWCSDN H +    
Sbjct: 1   MGDSASTFIAQPTSHPAKSSLPMLYYGLVVIGTATIVLVLYNLIIIKWCSDNSHGQASPA 60

Query: 61  MAGSYEEMMNSSRSFQSS----LSSFKFKKVAGAGA-----EEGNGNECAVCLSAFEDGE 120
           +AGSY EM+NSSRSFQSS    LSSFKFKK + A A     EEG GNECAVCLSAFEDGE
Sbjct: 61  LAGSYAEMVNSSRSFQSSNRNLLSSFKFKKGSTAKATATIEEEGIGNECAVCLSAFEDGE 120

Query: 121 EVKKLPRCTHTFHASCIDMWLYSHSDCPLCRAP-VAVAVAGRSRHEATAEQEENSGHVLL 166
           EVKKLPRCTH FHA CIDMWLYSHSDCPLCRAP +A A+  R   E  AEQ+ NSGH LL
Sbjct: 121 EVKKLPRCTHMFHAPCIDMWLYSHSDCPLCRAPAMAPALCQRHTAEDAAEQQVNSGHGLL 180

[Close]

BLAST of CsaV3_1G040790 vs. ExPASy Swiss-Prot
Match: O22755 (Probable E3 ubiquitin-protein ligase ATL44 OS=Arabidopsis thaliana OX=3702 GN=ATL44 PE=1 SV=1)

HSP 1 Score: 89.4 bits (220), Expect = 4.3e-17
Identity = 38/81 (46.91%), Postives = 51/81 (62.96%), Query Frame = 0


Query: 79  KKVAGAGAEEGNGNECAVCLSAFEDGEEVKKLPRCTHTFHASCIDMWLYSHSDCPLCRAP 138
           +  +GA AEEG+  ECA+CL+ F DGEE++ LP C H+FH  CID WL S S CP CR  
Sbjct: 87  ESTSGAAAEEGDSTECAICLTDFADGEEIRVLPLCGHSFHVECIDKWLVSRSSCPSCRRI 146

Query: 139 VAVAVAGRSRHEATAEQEENS 160
           +      R  H +TAE ++ +
Sbjct: 147 LTPVRCDRCGHASTAEMKDQA 167

[Close]

BLAST of CsaV3_1G040790 vs. ExPASy Swiss-Prot
Match: Q9LF64 (RING-H2 finger protein ATL52 OS=Arabidopsis thaliana OX=3702 GN=ATL52 PE=2 SV=1)

HSP 1 Score: 86.7 bits (213), Expect = 2.8e-16
Identity = 62/183 (33.88%), Postives = 89/183 (48.63%), Query Frame = 0


Query: 1   MSDSSTSTSTPHPAKSSLPMLYYGLVVVGTAAIVLVLYNFIVIKWCSDNRHRRRMAGSYE 60
           + D S+S+S      SS   L   L+ + T+A++LV Y  ++ K+C    HR     S  
Sbjct: 43  LDDDSSSSS------SSFSPLLIALIGILTSALILVSYYTLISKYC----HRHHQTSS-S 102

Query: 61  EMMNSSRSFQSSLSSFKFKKVAGAGAEEG-----------------NGNECAVCLSAFED 120
           E +N + + +   SS +     G G  E                  +G++C+VCLS FE+
Sbjct: 103 ETLNLNHNGEGFFSSTQRISTNGDGLNESMIKSITVYKYKSGDGFVDGSDCSVCLSEFEE 162

Query: 121 GEEVKKLPRCTHTFHASCIDMWLYSHSDCPLCRAPVA-----VAVAGRSRHEATAEQEEN 162
            E ++ LP+C H FH  CID WL SHS+CPLCRA V       A  G++     A Q  N
Sbjct: 163 NESLRLLPKCNHAFHLPCIDTWLKSHSNCPLCRAFVTGVNNPTASVGQNVSVVVANQ-SN 213

[Close]

BLAST of CsaV3_1G040790 vs. ExPASy Swiss-Prot
Match: P93823 (RING-H2 finger protein ATL1 OS=Arabidopsis thaliana OX=3702 GN=ATL1 PE=2 SV=1)

HSP 1 Score: 84.7 bits (208), Expect = 1.1e-15
Identity = 62/180 (34.44%), Postives = 86/180 (47.78%), Query Frame = 0


Query: 4   SSTSTSTPHPAKSS----LPMLYYGLVVVGTAAIVLVLYNFIVIKWCSD------NRHRR 63
           S+T TS   P  SS     P+L   ++ +   A +LV Y   VIK C +       R RR
Sbjct: 23  STTFTSPIFPRTSSSGTNFPILAIAVIGILATAFLLVSYYIFVIKCCLNWHQIDIFRRRR 82

Query: 64  RMAGSYEEMMNSSRSFQSSLSS--------FKFKK---VAGAGAEEGNGNECAVCLSAFE 123
           R +     M+ S       L          FKFKK   VAG   +  N  EC+VCL+ F+
Sbjct: 83  RSSDQNPLMIYSPHEVNRGLDESAIRAIPVFKFKKRDVVAGEEDQSKNSQECSVCLNEFQ 142

Query: 124 DGEEVKKLPRCTHTFHASCIDMWLYSHSDCPLCRAPVAV-AVAGRSRHEATAEQEENSGH 162
           + E+++ +P C H FH  CID+WL  +++CPLCR  V+  A        A +   ENS H
Sbjct: 143 EDEKLRIIPNCCHVFHIDCIDIWLQGNANCPLCRTSVSCEASFTLDLISAPSSPRENSPH 202

[Close]

BLAST of CsaV3_1G040790 vs. ExPASy Swiss-Prot
Match: Q9LRB7 (E3 ubiquitin-protein ligase EL5 OS=Oryza sativa subsp. japonica OX=39947 GN=EL5.1 PE=1 SV=1)

HSP 1 Score: 82.8 bits (203), Expect = 4.0e-15
Identity = 59/169 (34.91%), Postives = 79/169 (46.75%), Query Frame = 0


Query: 3   DSSTSTSTPHPAKSSLPMLYYGLVVVGTAAIVLVLY-----NFIVIKWCSDNRHR----- 62
           D S+S+S+P P  +           + T A VL+++      F++++   D R R     
Sbjct: 13  DESSSSSSPSPVSAPAGQAAMTAGGIATVAAVLIVFAALTLAFVLLQCYCDERRRAVTTT 72

Query: 63  -----------RRMAGSYEEMMNSSRSFQSSLSSFKF----KKVAGAGA-----EEGNGN 122
                      RR +GS  +           L S       +  A A A     E+ +G 
Sbjct: 73  STSGRGRRPRPRRRSGSGGDGGTGGGVDPEVLRSLPVTVYSRSTAAAAAKEEEEEDDDGV 132

Query: 123 ECAVCLSAFEDGEEVKKLPRCTHTFHASCIDMWLYSHSDCPLCRAPVAV 142
           ECAVCL+  EDGEE + LPRC H FHA C+DMWL SHS CPLCR  V V
Sbjct: 133 ECAVCLAELEDGEEARFLPRCGHGFHAECVDMWLGSHSTCPLCRLTVVV 181

[Close]

BLAST of CsaV3_1G040790 vs. ExPASy Swiss-Prot
Match: Q9LX93 (E3 ubiquitin-protein ligase RING1 OS=Arabidopsis thaliana OX=3702 GN=ATL55 PE=1 SV=1)

HSP 1 Score: 81.6 bits (200), Expect = 9.0e-15
Identity = 39/92 (42.39%), Postives = 56/92 (60.87%), Query Frame = 0


Query: 67  RSFQSSLSSFKFKKVAGAGAEEGNGNECAVCLSAFEDGEEVKKLPRCTHTFHASCIDMWL 126
           RS  +S++   FKK  G      +G EC+VCL+ FE+ E ++ LP+C+H FH +CID WL
Sbjct: 112 RSAINSITVVGFKKGEGI----IDGTECSVCLNEFEEDESLRLLPKCSHAFHLNCIDTWL 171

Query: 127 YSHSDCPLCRAPVAVAVAGRSRHEATAEQEEN 159
            SH +CPLCRAPV +      +   T  Q ++
Sbjct: 172 LSHKNCPLCRAPVLLITEPPHQETETNHQPDS 199

[Close]

BLAST of CsaV3_1G040790 vs. ExPASy TrEMBL
Match: A0A0A0LWX2 (RING-type E3 ubiquitin transferase OS=Cucumis sativus OX=3659 GN=Csa_1G595820 PE=3 SV=1)

HSP 1 Score: 333.6 bits (854), Expect = 4.8e-88
Identity = 166/166 (100.00%), Postives = 166/166 (100.00%), Query Frame = 0


Query: 1   MSDSSTSTSTPHPAKSSLPMLYYGLVVVGTAAIVLVLYNFIVIKWCSDNRHRRRMAGSYE 60
           MSDSSTSTSTPHPAKSSLPMLYYGLVVVGTAAIVLVLYNFIVIKWCSDNRHRRRMAGSYE
Sbjct: 1   MSDSSTSTSTPHPAKSSLPMLYYGLVVVGTAAIVLVLYNFIVIKWCSDNRHRRRMAGSYE 60

Query: 61  EMMNSSRSFQSSLSSFKFKKVAGAGAEEGNGNECAVCLSAFEDGEEVKKLPRCTHTFHAS 120
           EMMNSSRSFQSSLSSFKFKKVAGAGAEEGNGNECAVCLSAFEDGEEVKKLPRCTHTFHAS
Sbjct: 61  EMMNSSRSFQSSLSSFKFKKVAGAGAEEGNGNECAVCLSAFEDGEEVKKLPRCTHTFHAS 120

Query: 121 CIDMWLYSHSDCPLCRAPVAVAVAGRSRHEATAEQEENSGHVLLEV 167
           CIDMWLYSHSDCPLCRAPVAVAVAGRSRHEATAEQEENSGHVLLEV
Sbjct: 121 CIDMWLYSHSDCPLCRAPVAVAVAGRSRHEATAEQEENSGHVLLEV 166

[Close]

BLAST of CsaV3_1G040790 vs. ExPASy TrEMBL
Match: A0A5A7UKT6 (RING-type E3 ubiquitin transferase OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold16G001780 PE=3 SV=1)

HSP 1 Score: 289.7 bits (740), Expect = 8.0e-75
Identity = 154/169 (91.12%), Postives = 156/169 (92.31%), Query Frame = 0


Query: 1   MSDSSTSTSTPHPAKSSLPMLYYGLVVVGTAAIVLVLYNFIVIKWCSDNRHRRRMAGSYE 60
           MSDS  STSTPHPAKSSLPMLYYGLVVVGTAAIVLVLYNFIVIKWCSD+RHRRRMA SYE
Sbjct: 1   MSDS--STSTPHPAKSSLPMLYYGLVVVGTAAIVLVLYNFIVIKWCSDSRHRRRMAVSYE 60

Query: 61  EMMNSSRSFQSSLSSFKFKKVAG--AGAEEGNGNECAVCLSAFEDGEEVKKLPRCTHTFH 120
           EMMNSSRSFQSSLSSFKFKKVA   A AEEGNGNECAVCLSAFEDGEEVKKLPRCTHTFH
Sbjct: 61  EMMNSSRSFQSSLSSFKFKKVAAATATAEEGNGNECAVCLSAFEDGEEVKKLPRCTHTFH 120

Query: 121 ASCIDMWLYSHSDCPLCRAPVAVAVAGRSRHE-ATAEQEENSGHVLLEV 167
           ASCIDMWLYSHSDCPLCRAP  VAV G SRHE  TAEQ+ENSGHVLLEV
Sbjct: 121 ASCIDMWLYSHSDCPLCRAP--VAVPGVSRHETTTAEQDENSGHVLLEV 165

[Close]

BLAST of CsaV3_1G040790 vs. ExPASy TrEMBL
Match: A0A1S3BQC4 (RING-type E3 ubiquitin transferase OS=Cucumis melo OX=3656 GN=LOC103492354 PE=3 SV=1)

HSP 1 Score: 289.7 bits (740), Expect = 8.0e-75
Identity = 154/169 (91.12%), Postives = 156/169 (92.31%), Query Frame = 0


Query: 1   MSDSSTSTSTPHPAKSSLPMLYYGLVVVGTAAIVLVLYNFIVIKWCSDNRHRRRMAGSYE 60
           MSDS  STSTPHPAKSSLPMLYYGLVVVGTAAIVLVLYNFIVIKWCSD+RHRRRMA SYE
Sbjct: 1   MSDS--STSTPHPAKSSLPMLYYGLVVVGTAAIVLVLYNFIVIKWCSDSRHRRRMAVSYE 60

Query: 61  EMMNSSRSFQSSLSSFKFKKVAG--AGAEEGNGNECAVCLSAFEDGEEVKKLPRCTHTFH 120
           EMMNSSRSFQSSLSSFKFKKVA   A AEEGNGNECAVCLSAFEDGEEVKKLPRCTHTFH
Sbjct: 61  EMMNSSRSFQSSLSSFKFKKVAAATATAEEGNGNECAVCLSAFEDGEEVKKLPRCTHTFH 120

Query: 121 ASCIDMWLYSHSDCPLCRAPVAVAVAGRSRHE-ATAEQEENSGHVLLEV 167
           ASCIDMWLYSHSDCPLCRAP  VAV G SRHE  TAEQ+ENSGHVLLEV
Sbjct: 121 ASCIDMWLYSHSDCPLCRAP--VAVPGVSRHETTTAEQDENSGHVLLEV 165

[Close]

BLAST of CsaV3_1G040790 vs. ExPASy TrEMBL
Match: A0A6J1D0Z7 (RING-type E3 ubiquitin transferase OS=Momordica charantia OX=3673 GN=LOC111016600 PE=3 SV=1)

HSP 1 Score: 232.3 bits (591), Expect = 1.5e-57
Identity = 130/180 (72.22%), Postives = 139/180 (77.22%), Query Frame = 0


Query: 1   MSDSSTSTS-----TPHPAKSSLPMLYYGLVVVGTAAIVLVLYNFIVIKWCSDNRHRRR- 60
           M DS +S++     TPHPAKSSLPMLYYGLVVVGTAAIVLV+YNFIVI+WCSD R R   
Sbjct: 1   MVDSYSSSTPFTQPTPHPAKSSLPMLYYGLVVVGTAAIVLVVYNFIVIRWCSDRRGRGSP 60

Query: 61  -MAGSYEEMMNSSRSFQSS----LSSFKFKK----VAGAGAEEGNGNECAVCLSAFEDGE 120
            MA SY EMM+SS SFQSS    LSSF+FKK     A    EEGNG ECAVCLSAFEDGE
Sbjct: 61  GMARSYAEMMSSSGSFQSSSRNLLSSFRFKKGTKAAAATAEEEGNGLECAVCLSAFEDGE 120

Query: 121 EVKKLPRCTHTFHASCIDMWLYSHSDCPLCRAPVAVAVAGRSRHEATAEQEENSGHVLLE 166
           EVKKLPRCTH FHA CIDMWLYSHSDCPLCRAPVA+A  G  +H   AEQ ENSGH LLE
Sbjct: 121 EVKKLPRCTHMFHAPCIDMWLYSHSDCPLCRAPVALA-PGLCQHHTAAEQPENSGHGLLE 179

[Close]

BLAST of CsaV3_1G040790 vs. ExPASy TrEMBL
Match: A0A6J1JJ05 (RING-type E3 ubiquitin transferase OS=Cucurbita maxima OX=3661 GN=LOC111485020 PE=3 SV=1)

HSP 1 Score: 227.6 bits (579), Expect = 3.7e-56
Identity = 126/177 (71.19%), Postives = 137/177 (77.40%), Query Frame = 0


Query: 1   MSDSST---STSTPHPAKSSLPMLYYGLVVVGTAAIVLVLYNFIVIKWCSDNRHRR---R 60
           MSDS++   S  T HPAKSSLPMLYYGLVV+GTAAIVLVLYNFIVI WCSDNR  R    
Sbjct: 1   MSDSASNHFSQPTNHPAKSSLPMLYYGLVVIGTAAIVLVLYNFIVIMWCSDNRRGRASPA 60

Query: 61  MAGSYEEMMNSSRSFQSS----LSSFKFKKVAGAGA--EEGNGNECAVCLSAFEDGEEVK 120
           +AGSY EM+NSSRS QSS    L SFKFKK + A A  EEGNGNEC VCLSAFE+GEEVK
Sbjct: 61  LAGSYAEMVNSSRSLQSSNRNLLCSFKFKKGSAAAAVEEEGNGNECVVCLSAFEEGEEVK 120

Query: 121 KLPRCTHTFHASCIDMWLYSHSDCPLCRAPVAVAVAGRSRHEATAEQEENSGHVLLE 166
           KLPRC H FHA CIDMWL+SH DCPLCRAP  VAV G S+ +  AEQ+ NSGH L E
Sbjct: 121 KLPRCLHMFHARCIDMWLFSHCDCPLCRAP--VAVPGLSKRQTAAEQQGNSGHGLPE 175

[Close]

BLAST of CsaV3_1G040790 vs. TAIR 10
Match: AT2G17450.1 (RING-H2 finger A3A )

HSP 1 Score: 89.4 bits (220), Expect = 3.1e-18
Identity = 38/81 (46.91%), Postives = 51/81 (62.96%), Query Frame = 0


Query: 79  KKVAGAGAEEGNGNECAVCLSAFEDGEEVKKLPRCTHTFHASCIDMWLYSHSDCPLCRAP 138
           +  +GA AEEG+  ECA+CL+ F DGEE++ LP C H+FH  CID WL S S CP CR  
Sbjct: 87  ESTSGAAAEEGDSTECAICLTDFADGEEIRVLPLCGHSFHVECIDKWLVSRSSCPSCRRI 146

Query: 139 VAVAVAGRSRHEATAEQEENS 160
           +      R  H +TAE ++ +
Sbjct: 147 LTPVRCDRCGHASTAEMKDQA 167

[Close]

BLAST of CsaV3_1G040790 vs. TAIR 10
Match: AT5G17600.1 (RING/U-box superfamily protein )

HSP 1 Score: 86.7 bits (213), Expect = 2.0e-17
Identity = 62/183 (33.88%), Postives = 89/183 (48.63%), Query Frame = 0


Query: 1   MSDSSTSTSTPHPAKSSLPMLYYGLVVVGTAAIVLVLYNFIVIKWCSDNRHRRRMAGSYE 60
           + D S+S+S      SS   L   L+ + T+A++LV Y  ++ K+C    HR     S  
Sbjct: 43  LDDDSSSSS------SSFSPLLIALIGILTSALILVSYYTLISKYC----HRHHQTSS-S 102

Query: 61  EMMNSSRSFQSSLSSFKFKKVAGAGAEEG-----------------NGNECAVCLSAFED 120
           E +N + + +   SS +     G G  E                  +G++C+VCLS FE+
Sbjct: 103 ETLNLNHNGEGFFSSTQRISTNGDGLNESMIKSITVYKYKSGDGFVDGSDCSVCLSEFEE 162

Query: 121 GEEVKKLPRCTHTFHASCIDMWLYSHSDCPLCRAPVA-----VAVAGRSRHEATAEQEEN 162
            E ++ LP+C H FH  CID WL SHS+CPLCRA V       A  G++     A Q  N
Sbjct: 163 NESLRLLPKCNHAFHLPCIDTWLKSHSNCPLCRAFVTGVNNPTASVGQNVSVVVANQ-SN 213

[Close]

BLAST of CsaV3_1G040790 vs. TAIR 10
Match: AT1G04360.1 (RING/U-box superfamily protein )

HSP 1 Score: 84.7 bits (208), Expect = 7.5e-17
Identity = 62/180 (34.44%), Postives = 86/180 (47.78%), Query Frame = 0


Query: 4   SSTSTSTPHPAKSS----LPMLYYGLVVVGTAAIVLVLYNFIVIKWCSD------NRHRR 63
           S+T TS   P  SS     P+L   ++ +   A +LV Y   VIK C +       R RR
Sbjct: 23  STTFTSPIFPRTSSSGTNFPILAIAVIGILATAFLLVSYYIFVIKCCLNWHQIDIFRRRR 82

Query: 64  RMAGSYEEMMNSSRSFQSSLSS--------FKFKK---VAGAGAEEGNGNECAVCLSAFE 123
           R +     M+ S       L          FKFKK   VAG   +  N  EC+VCL+ F+
Sbjct: 83  RSSDQNPLMIYSPHEVNRGLDESAIRAIPVFKFKKRDVVAGEEDQSKNSQECSVCLNEFQ 142

Query: 124 DGEEVKKLPRCTHTFHASCIDMWLYSHSDCPLCRAPVAV-AVAGRSRHEATAEQEENSGH 162
           + E+++ +P C H FH  CID+WL  +++CPLCR  V+  A        A +   ENS H
Sbjct: 143 EDEKLRIIPNCCHVFHIDCIDIWLQGNANCPLCRTSVSCEASFTLDLISAPSSPRENSPH 202

[Close]

BLAST of CsaV3_1G040790 vs. TAIR 10
Match: AT5G10380.1 (RING/U-box superfamily protein )

HSP 1 Score: 81.6 bits (200), Expect = 6.4e-16
Identity = 39/92 (42.39%), Postives = 56/92 (60.87%), Query Frame = 0


Query: 67  RSFQSSLSSFKFKKVAGAGAEEGNGNECAVCLSAFEDGEEVKKLPRCTHTFHASCIDMWL 126
           RS  +S++   FKK  G      +G EC+VCL+ FE+ E ++ LP+C+H FH +CID WL
Sbjct: 112 RSAINSITVVGFKKGEGI----IDGTECSVCLNEFEEDESLRLLPKCSHAFHLNCIDTWL 171

Query: 127 YSHSDCPLCRAPVAVAVAGRSRHEATAEQEEN 159
            SH +CPLCRAPV +      +   T  Q ++
Sbjct: 172 LSHKNCPLCRAPVLLITEPPHQETETNHQPDS 199

[Close]

BLAST of CsaV3_1G040790 vs. TAIR 10
Match: AT4G17905.1 (RING/U-box superfamily protein )

HSP 1 Score: 80.5 bits (197), Expect = 1.4e-15
Identity = 30/60 (50.00%), Postives = 40/60 (66.67%), Query Frame = 0


Query: 90  NGNECAVCLSAFEDGEEVKKLPRCTHTFHASCIDMWLYSHSDCPLCRAPVAVAVAGRSRH 149
           NG +C++CL  F + E ++ LP+C HTFH  CID WL SHS+CPLCRA + V    +  H
Sbjct: 151 NGTDCSICLGEFNEDESLRLLPKCNHTFHVVCIDRWLKSHSNCPLCRAKIIVPTTQQPEH 210

The following BLAST results are available for this feature:

BLAST of CsaV3_1G040790 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_004144121.1	1.0e-87	100.00	RING-H2 finger protein ATL39 [Cucumis sativus] >KGN66278.1 hypothetical protein ...	[more]
XP_008450904.1	1.7e-74	91.12	PREDICTED: RING-H2 finger protein ATL52-like [Cucumis melo] >KAA0055794.1 RING-H...	[more]
XP_038879803.1	1.4e-65	78.86	RING-H2 finger protein ATL39-like [Benincasa hispida]	[more]
XP_022147740.1	3.1e-57	72.22	E3 ubiquitin-protein ligase EL5-like [Momordica charantia]	[more]
XP_022968369.1	7.7e-56	70.17	RING-H2 finger protein ATL52-like [Cucurbita maxima]	[more]

BLAST of CsaV3_1G040790 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
O22755	4.3e-17	46.91	Probable E3 ubiquitin-protein ligase ATL44 OS=Arabidopsis thaliana OX=3702 GN=AT...	[more]
Q9LF64	2.8e-16	33.88	RING-H2 finger protein ATL52 OS=Arabidopsis thaliana OX=3702 GN=ATL52 PE=2 SV=1	[more]
P93823	1.1e-15	34.44	RING-H2 finger protein ATL1 OS=Arabidopsis thaliana OX=3702 GN=ATL1 PE=2 SV=1	[more]
Q9LRB7	4.0e-15	34.91	E3 ubiquitin-protein ligase EL5 OS=Oryza sativa subsp. japonica OX=39947 GN=EL5....	[more]
Q9LX93	9.0e-15	42.39	E3 ubiquitin-protein ligase RING1 OS=Arabidopsis thaliana OX=3702 GN=ATL55 PE=1 ...	[more]

BLAST of CsaV3_1G040790 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0LWX2	4.8e-88	100.00	RING-type E3 ubiquitin transferase OS=Cucumis sativus OX=3659 GN=Csa_1G595820 PE...	[more]
A0A5A7UKT6	8.0e-75	91.12	RING-type E3 ubiquitin transferase OS=Cucumis melo var. makuwa OX=1194695 GN=E56...	[more]
A0A1S3BQC4	8.0e-75	91.12	RING-type E3 ubiquitin transferase OS=Cucumis melo OX=3656 GN=LOC103492354 PE=3 ...	[more]
A0A6J1D0Z7	1.5e-57	72.22	RING-type E3 ubiquitin transferase OS=Momordica charantia OX=3673 GN=LOC11101660...	[more]
A0A6J1JJ05	3.7e-56	71.19	RING-type E3 ubiquitin transferase OS=Cucurbita maxima OX=3661 GN=LOC111485020 P...	[more]

BLAST of CsaV3_1G040790 vs. TAIR 10


Match Name	E-value	Identity	Description
AT2G17450.1	3.1e-18	46.91	RING-H2 finger A3A	[more]
AT5G17600.1	2.0e-17	33.88	RING/U-box superfamily protein	[more]
AT1G04360.1	7.5e-17	34.44	RING/U-box superfamily protein	[more]
AT5G10380.1	6.4e-16	42.39	RING/U-box superfamily protein	[more]
AT4G17905.1	1.4e-15	50.00	RING/U-box superfamily protein	[more]

InterPro

Analysis Name: InterPro Annotations of Cucumber (Chinese Long) v3
Date Performed: 2021-10-25

Position :

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x 1


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR001841	Zinc finger, RING-type	SMART	SM00184	ring_2	coord: 94..135 e-value: 3.2E-6 score: 36.7
IPR001841	Zinc finger, RING-type	PFAM	PF13639	zf-RING_2	coord: 92..136 e-value: 1.2E-13 score: 51.1
IPR001841	Zinc finger, RING-type	PROSITE	PS50089	ZF_RING_2	coord: 94..136 score: 12.312242
IPR013083	Zinc finger, RING/FYVE/PHD-type	GENE3D	3.30.40.10	Zinc/RING finger domain, C3HC4 (zinc finger)	coord: 49..141 e-value: 6.7E-22 score: 79.0
None	No IPR available	PANTHER	PTHR45676:SF84	RING-H2 FINGER PROTEIN ATL52-LIKE	coord: 6..164
None	No IPR available	CDD	cd16461	RING-H2_EL5_like	coord: 93..136 e-value: 7.17384E-19 score: 73.4983
None	No IPR available	SUPERFAMILY	57850	RING/U-box	coord: 87..142
IPR044675	E3 ubiquitin-protein ligase RING1-like	PANTHER	PTHR45676	RING-H2 FINGER PROTEIN ATL51-RELATED	coord: 6..164

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CsaV3_1G040790.1	CsaV3_1G040790.1	mRNA