CsaV3_1G034000 (gene) Cucumber (Chinese Long) v3

Overview
NameCsaV3_1G034000
Typegene
OrganismCucumis sativus L. var. sativus cv. Chinese Long (Cucumber (Chinese Long) v3)
DescriptionPol polyprotein
Locationchr1: 21219077 .. 21219352 (+)
RNA-Seq ExpressionCsaV3_1G034000
SyntenyCsaV3_1G034000
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGGACATCAATCAAAAGATTGTCGTAAGCCAAAGAACCTTAAGAAAAAACATGCTCAAGCTCATATCACAGAAGTTGATGAAGTATCAAATGGTGTTGCAGATATTGACCTTTGTGTAGTTATTTTAGAATGCAACAAGGTGGATAACTCCAAGGAATGGTGGGTAGACACTGGGGCTACTCGTCATATTTGTGCCAACAAGTATATGTTGACATCATATGTGCCAGTCTCTGGTGGAGAACAACTATTTATGGGTAACGCATATACTTCAAAG

mRNA sequence

ATGGGACATCAATCAAAAGATTGTCGTAAGCCAAAGAACCTTAAGAAAAAACATGCTCAAGCTCATATCACAGAAGTTGATGAAGTATCAAATGGTGTTGCAGATATTGACCTTTGTGTAGTTATTTTAGAATGCAACAAGGTGGATAACTCCAAGGAATGGTGGGTAGACACTGGGGCTACTCGTCATATTTGTGCCAACAAGTATATGTTGACATCATATGTGCCAGTCTCTGGTGGAGAACAACTATTTATGGGTAACGCATATACTTCAAAG

Coding sequence (CDS)

ATGGGACATCAATCAAAAGATTGTCGTAAGCCAAAGAACCTTAAGAAAAAACATGCTCAAGCTCATATCACAGAAGTTGATGAAGTATCAAATGGTGTTGCAGATATTGACCTTTGTGTAGTTATTTTAGAATGCAACAAGGTGGATAACTCCAAGGAATGGTGGGTAGACACTGGGGCTACTCGTCATATTTGTGCCAACAAGTATATGTTGACATCATATGTGCCAGTCTCTGGTGGAGAACAACTATTTATGGGTAACGCATATACTTCAAAG

Protein sequence

MGHQSKDCRKPKNLKKKHAQAHITEVDEVSNGVADIDLCVVILECNKVDNSKEWWVDTGATRHICANKYMLTSYVPVSGGEQLFMGNAYTSK
Homology
BLAST of CsaV3_1G034000 vs. NCBI nr
Match: KAE8653238.1 (hypothetical protein Csa_019792, partial [Cucumis sativus])

HSP 1 Score: 196.4 bits (498), Expect = 1.1e-46
Identity = 92/92 (100.00%), Postives = 92/92 (100.00%), Query Frame = 0

Query: 1  MGHQSKDCRKPKNLKKKHAQAHITEVDEVSNGVADIDLCVVILECNKVDNSKEWWVDTGA 60
          MGHQSKDCRKPKNLKKKHAQAHITEVDEVSNGVADIDLCVVILECNKVDNSKEWWVDTGA
Sbjct: 1  MGHQSKDCRKPKNLKKKHAQAHITEVDEVSNGVADIDLCVVILECNKVDNSKEWWVDTGA 60

Query: 61 TRHICANKYMLTSYVPVSGGEQLFMGNAYTSK 93
          TRHICANKYMLTSYVPVSGGEQLFMGNAYTSK
Sbjct: 61 TRHICANKYMLTSYVPVSGGEQLFMGNAYTSK 92

BLAST of CsaV3_1G034000 vs. NCBI nr
Match: KAA0062659.1 (pol polyprotein [Cucumis melo var. makuwa] >TYK01193.1 pol polyprotein [Cucumis melo var. makuwa])

HSP 1 Score: 164.1 bits (414), Expect = 5.8e-37
Identity = 76/92 (82.61%), Postives = 81/92 (88.04%), Query Frame = 0

Query: 1  MGHQSKDCRKPKNLKKKHAQAHITEVDEVSNGVADIDLCVVILECNKVDNSKEWWVDTGA 60
          MGHQSKDCRKPK  +KKHAQAHITEVDEVS+GVADIDLC VILECN +DNSKEWWVDTGA
Sbjct: 1  MGHQSKDCRKPKTFQKKHAQAHITEVDEVSDGVADIDLCAVILECNMMDNSKEWWVDTGA 60

Query: 61 TRHICANKYMLTSYVPVSGGEQLFMGNAYTSK 93
          TRHIC NK +  SYV VS GEQLFMGN+ TSK
Sbjct: 61 TRHICVNKNLFISYVSVSNGEQLFMGNSSTSK 92

BLAST of CsaV3_1G034000 vs. NCBI nr
Match: KAA0066206.1 (pol polyprotein [Cucumis melo var. makuwa] >TYK13469.1 pol polyprotein [Cucumis melo var. makuwa])

HSP 1 Score: 160.6 bits (405), Expect = 6.4e-36
Identity = 74/92 (80.43%), Postives = 81/92 (88.04%), Query Frame = 0

Query: 1  MGHQSKDCRKPKNLKKKHAQAHITEVDEVSNGVADIDLCVVILECNKVDNSKEWWVDTGA 60
          MGHQSKDCRKPKN +KKH QAHITEVDEVS+ +ADIDLC VI ECN VD+SKEWWVDTGA
Sbjct: 1  MGHQSKDCRKPKNFQKKHIQAHITEVDEVSDDIADIDLCAVISECNMVDDSKEWWVDTGA 60

Query: 61 TRHICANKYMLTSYVPVSGGEQLFMGNAYTSK 93
          TRHICANK M TSY+ VS GE+LFMGN+ TSK
Sbjct: 61 TRHICANKNMFTSYMSVSNGEKLFMGNSSTSK 92

BLAST of CsaV3_1G034000 vs. NCBI nr
Match: KAA0042920.1 (pol polyprotein [Cucumis melo var. makuwa] >TYK05320.1 pol polyprotein [Cucumis melo var. makuwa])

HSP 1 Score: 160.2 bits (404), Expect = 8.4e-36
Identity = 75/92 (81.52%), Postives = 79/92 (85.87%), Query Frame = 0

Query: 1   MGHQSKDCRKPKNLKKKHAQAHITEVDEVSNGVADIDLCVVILECNKVDNSKEWWVDTGA 60
           MGHQSKD  KPKN +KKH QAHITEVDEVS+GV DIDLC VI ECN V NSKEWWVDTGA
Sbjct: 199 MGHQSKDYHKPKNFQKKHVQAHITEVDEVSDGVVDIDLCAVISECNMVGNSKEWWVDTGA 258

Query: 61  TRHICANKYMLTSYVPVSGGEQLFMGNAYTSK 93
           TRHICANK M TSYV VS GEQLFMGN++TSK
Sbjct: 259 TRHICANKNMFTSYVSVSNGEQLFMGNSFTSK 290

BLAST of CsaV3_1G034000 vs. NCBI nr
Match: TYK01391.1 (pol polyprotein [Cucumis melo var. makuwa])

HSP 1 Score: 159.8 bits (403), Expect = 1.1e-35
Identity = 73/92 (79.35%), Postives = 81/92 (88.04%), Query Frame = 0

Query: 1  MGHQSKDCRKPKNLKKKHAQAHITEVDEVSNGVADIDLCVVILECNKVDNSKEWWVDTGA 60
          MGHQSKDCRKPKN +KKHAQAHITEVDEVS+GVADID+C V+LECN + NSKEWWVDTGA
Sbjct: 1  MGHQSKDCRKPKNFQKKHAQAHITEVDEVSDGVADIDICAVVLECNMMGNSKEWWVDTGA 60

Query: 61 TRHICANKYMLTSYVPVSGGEQLFMGNAYTSK 93
          T HICANK + TSYV V+ GEQLFMGN+  SK
Sbjct: 61 TCHICANKNLFTSYVSVANGEQLFMGNSSMSK 92

BLAST of CsaV3_1G034000 vs. ExPASy TrEMBL
Match: A0A5D3BN56 (Pol polyprotein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold2044G00390 PE=4 SV=1)

HSP 1 Score: 164.1 bits (414), Expect = 2.8e-37
Identity = 76/92 (82.61%), Postives = 81/92 (88.04%), Query Frame = 0

Query: 1  MGHQSKDCRKPKNLKKKHAQAHITEVDEVSNGVADIDLCVVILECNKVDNSKEWWVDTGA 60
          MGHQSKDCRKPK  +KKHAQAHITEVDEVS+GVADIDLC VILECN +DNSKEWWVDTGA
Sbjct: 1  MGHQSKDCRKPKTFQKKHAQAHITEVDEVSDGVADIDLCAVILECNMMDNSKEWWVDTGA 60

Query: 61 TRHICANKYMLTSYVPVSGGEQLFMGNAYTSK 93
          TRHIC NK +  SYV VS GEQLFMGN+ TSK
Sbjct: 61 TRHICVNKNLFISYVSVSNGEQLFMGNSSTSK 92

BLAST of CsaV3_1G034000 vs. ExPASy TrEMBL
Match: A0A5D3CTI3 (Pol polyprotein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold75379G00010 PE=4 SV=1)

HSP 1 Score: 160.6 bits (405), Expect = 3.1e-36
Identity = 74/92 (80.43%), Postives = 81/92 (88.04%), Query Frame = 0

Query: 1  MGHQSKDCRKPKNLKKKHAQAHITEVDEVSNGVADIDLCVVILECNKVDNSKEWWVDTGA 60
          MGHQSKDCRKPKN +KKH QAHITEVDEVS+ +ADIDLC VI ECN VD+SKEWWVDTGA
Sbjct: 1  MGHQSKDCRKPKNFQKKHIQAHITEVDEVSDDIADIDLCAVISECNMVDDSKEWWVDTGA 60

Query: 61 TRHICANKYMLTSYVPVSGGEQLFMGNAYTSK 93
          TRHICANK M TSY+ VS GE+LFMGN+ TSK
Sbjct: 61 TRHICANKNMFTSYMSVSNGEKLFMGNSSTSK 92

BLAST of CsaV3_1G034000 vs. ExPASy TrEMBL
Match: A0A5A7THY2 (Pol polyprotein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold108G001460 PE=4 SV=1)

HSP 1 Score: 160.2 bits (404), Expect = 4.0e-36
Identity = 75/92 (81.52%), Postives = 79/92 (85.87%), Query Frame = 0

Query: 1   MGHQSKDCRKPKNLKKKHAQAHITEVDEVSNGVADIDLCVVILECNKVDNSKEWWVDTGA 60
           MGHQSKD  KPKN +KKH QAHITEVDEVS+GV DIDLC VI ECN V NSKEWWVDTGA
Sbjct: 199 MGHQSKDYHKPKNFQKKHVQAHITEVDEVSDGVVDIDLCAVISECNMVGNSKEWWVDTGA 258

Query: 61  TRHICANKYMLTSYVPVSGGEQLFMGNAYTSK 93
           TRHICANK M TSYV VS GEQLFMGN++TSK
Sbjct: 259 TRHICANKNMFTSYVSVSNGEQLFMGNSFTSK 290

BLAST of CsaV3_1G034000 vs. ExPASy TrEMBL
Match: A0A5D3BNM4 (Pol polyprotein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold29G00850 PE=4 SV=1)

HSP 1 Score: 159.8 bits (403), Expect = 5.3e-36
Identity = 73/92 (79.35%), Postives = 81/92 (88.04%), Query Frame = 0

Query: 1  MGHQSKDCRKPKNLKKKHAQAHITEVDEVSNGVADIDLCVVILECNKVDNSKEWWVDTGA 60
          MGHQSKDCRKPKN +KKHAQAHITEVDEVS+GVADID+C V+LECN + NSKEWWVDTGA
Sbjct: 1  MGHQSKDCRKPKNFQKKHAQAHITEVDEVSDGVADIDICAVVLECNMMGNSKEWWVDTGA 60

Query: 61 TRHICANKYMLTSYVPVSGGEQLFMGNAYTSK 93
          T HICANK + TSYV V+ GEQLFMGN+  SK
Sbjct: 61 TCHICANKNLFTSYVSVANGEQLFMGNSSMSK 92

BLAST of CsaV3_1G034000 vs. ExPASy TrEMBL
Match: A0A5D3BT19 (Pol polyprotein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold18G00610 PE=4 SV=1)

HSP 1 Score: 157.1 bits (396), Expect = 3.4e-35
Identity = 73/92 (79.35%), Postives = 80/92 (86.96%), Query Frame = 0

Query: 1  MGHQSKDCRKPKNLKKKHAQAHITEVDEVSNGVADIDLCVVILECNKVDNSKEWWVDTGA 60
          MGHQSKDCRKPKN +KKHAQAHITEVDEVS+GVADIDL  VIL+CN V N KEWWVDT A
Sbjct: 1  MGHQSKDCRKPKNFQKKHAQAHITEVDEVSDGVADIDLYAVILKCNMVGNFKEWWVDTSA 60

Query: 61 TRHICANKYMLTSYVPVSGGEQLFMGNAYTSK 93
          TRHICANK M  SYV +S GEQLFMG+++TSK
Sbjct: 61 TRHICANKNMFVSYVSISNGEQLFMGDSFTSK 92

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
KAE8653238.11.1e-46100.00hypothetical protein Csa_019792, partial [Cucumis sativus][more]
KAA0062659.15.8e-3782.61pol polyprotein [Cucumis melo var. makuwa] >TYK01193.1 pol polyprotein [Cucumis ... [more]
KAA0066206.16.4e-3680.43pol polyprotein [Cucumis melo var. makuwa] >TYK13469.1 pol polyprotein [Cucumis ... [more]
KAA0042920.18.4e-3681.52pol polyprotein [Cucumis melo var. makuwa] >TYK05320.1 pol polyprotein [Cucumis ... [more]
TYK01391.11.1e-3579.35pol polyprotein [Cucumis melo var. makuwa][more]
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A5D3BN562.8e-3782.61Pol polyprotein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold2044G003... [more]
A0A5D3CTI33.1e-3680.43Pol polyprotein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold75379G00... [more]
A0A5A7THY24.0e-3681.52Pol polyprotein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold108G0014... [more]
A0A5D3BNM45.3e-3679.35Pol polyprotein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold29G00850... [more]
A0A5D3BT193.4e-3579.35Pol polyprotein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold18G00610... [more]
Match NameE-valueIdentityDescription
InterPro
Analysis Name: InterPro Annotations of Cucumber (Chinese Long) v3
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePANTHERPTHR47592:SF5OS08G0421300 PROTEINcoord: 24..92
NoneNo IPR availablePANTHERPTHR47592PBF68 PROTEINcoord: 24..92

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CsaV3_1G034000.1CsaV3_1G034000.1mRNA