CsaV3_1G033810 (gene) Cucumber (Chinese Long) v3

Overview


Name	CsaV3_1G033810
Type	gene
Organism	Cucumis sativus L. var. sativus cv. Chinese Long (Cucumber (Chinese Long) v3)
Description	CCT domain-containing protein
Location	chr1: 20913251 .. 20915731 (+)
RNA-Seq Expression	CsaV3_1G033810
Synteny	CsaV3_1G033810

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

GAAAAATGGTCAACCCTCTCCCAATCCTACATAACCCCCTCCATCTCCCATCCCTTCCTTTCATTCCACAAACCCAACAAAAATTCAAACTCTTCTCCCTCCTCCTTCTTCCCTCCGCCACCACATCATGCATAGCTTCTCCCCCGCCGTTGACACCTCCATCTTTCACCTCCACTCCCCCGACCTCATCGTGTCCCCCCCACTTTTTCCATCATTCCCTAACTTCTCATCTTCTCATTCCTCTTCCTTTCTCCTAGCATACAGCCAGCTCGCTCTGAACCCGGTGCTCGAGTCACCTGAGCTTTTACCCTCAGAGGTGATCAGTTATAGTGGTAGTAGTGGACCTTGTAGTAGCTACGGGTCTCCGACGTCATCGCAACCTTCCCTAATACAGCGGAGCATGAGTAGCCAGTCGCTCCAAAAGGATAGGGTAAGGCATGGACCGGGTGCTAGGATTTCCTCGTTAATCGACACGGATATGCCGGCCGTGAGAAGGGTTTACAGCTCCGGTGATTTGCAGGTGAACCCCAAAATTTGGCTGCAAAATTCTAGTGTTTCATTATTCTTTCGCACTTAAGACATTGCATCTTAACAACAATTGTCTTTGAGAATCATATGATCTTTATAAAATCATAGTCAAACACACCAATTATTTCTCCCATATTTTGTTAAATAAATTTTACAATATGAAAAAAATATAATGGTATAATTCATATATGTTCTGAAATCTATTTCTTTTACCATTAAGTAAAAAATATATTTCTCTTGTAAATAGAAAAGATTATACTGAAAAAATTGATATGAAATAATTCAGGGAAGAACAGAAAGAGGGTGCTCAAGTGAAAGCAGTTTGATAATAGAAGGAATGACCAAAGCTTGTAGATATAGTCCTGAAGAGAAGAGAGAGAGAATTGAAAGATATAAAACCAAAAGAAATCAAAGGAATTTTAATAAGAAGATCAAGGTAATTATTTATTTTTCAATTATTTCTTTATTATTATTCAACGAGTTTAAATTTGTGGTTCCTAAGCTTTCATAATAGTTGTGTCTAATAAATCATTCAGGAAGTTTAAACTCATCAAATAATTAAACTTATGAACTTCTTTTAATACTGTGTTTAATAGATTCAATAGATTCATGAATTTTAAAAATAAAAGACTCTTTTAGAGAACAAATTTAAAAATCTATTAACCTCTTAGACTGGAAATTAAAATTACTACAAATCTATTATAAACATTCCAAAGTTTAAAACATATTTGGCACAGTTGAATAATTAAACTTAAAACTTAACCTATTCTCTTATTAAAAAAAACTATTTCTTCTTCTTTCCCTGCTTTCTTTTTCCTTTCTACTTTTACGTAAACTATTACTACTATAAACAAATAAATTATAACTGGGATATAATTGAGATTAACTACTAATTATTTTTAGAATTATTTGTATAATGTAACGTATATTTTCATAATTAAAAATAATTCTATTTCATATAGTCATCTACAAAGATATATCGTAATAGACCATATTAGGTGTATTAATAATCTATTGAATAATGAGACTATGACCCTCAAATTTTGAGTTTGAGTTTAAAATATAACTAAGTAGGCAAATAATTAGTGCTTTTTTTTGCTACATGAATATGGTTTAGAAAAAGAAGAAATAAGGACAAGACATTTCTAAAATAATTGAGGCATTTTGGAAGTTAAAAGACAAAGTGGACTGAAAAATGATTGTGGATAGGGTTTCTATTCATATGTAGCTAACAATAGTGATATGTTATTTTTCTACTCCAATCACATTTTTAATTCGATTTTTTTTAGTTGCCTCTATTTTTCGATTTTGTTTTAACAACTTCTAAATATTTTACATTTGTATCAAATAGGTCATTCAACCTATTGAACTATTTTAAAAGTTTGTAAACTTAAAGGACATATAATAATTAATTTAACAGTAATTTTATTTACATTTTCATGATTAATCTCTTTAGTCAAACTTTAGTTTTTTTTTTTTAATGGAAATTGACAAGTTTTCTTAATTATTTTTATCTATAGTTAAGGTTATATATCTAATCATTTGTTATATAATTTAATAGTATGAATGTAGAAAAACATTGGCCGATAGTAGAAGACGAATAAGAGGAAGATTTGCAAGAAATGAAGAAATTGAAAATGGTAACTCCACCAGCTCTCCATTAGAGGCATGGAGTTGTTATGAAAATCCCATGGTGGAGGAAGACACCGTCCAAGATGATGGCTCATGGATCACCTTTCTAGATTCGTACCATCGCTAAATTGATAAAAAAAATTGAACAATCGACTTTTAAAATGGTAAAAATTAAATCTTTTTTGTTCTGTATCGTTAAACTTTGTAATTAAATTGAAGTTCACTTCGAATGTACTGTTGTAAGAAGTATGTGCATTGTGCATATTTTTGTATACGTGATATCAATTATTACTTTAGTTCTGCCAATTTCATTGTCTATTT

mRNA sequence

ATGCATAGCTTCTCCCCCGCCGTTGACACCTCCATCTTTCACCTCCACTCCCCCGACCTCATCGTGTCCCCCCCACTTTTTCCATCATTCCCTAACTTCTCATCTTCTCATTCCTCTTCCTTTCTCCTAGCATACAGCCAGCTCGCTCTGAACCCGGTGCTCGAGTCACCTGAGCTTTTACCCTCAGAGGTGATCAGTTATAGTGGTAGTAGTGGACCTTGTAGTAGCTACGGGTCTCCGACGTCATCGCAACCTTCCCTAATACAGCGGAGCATGAGTAGCCAGTCGCTCCAAAAGGATAGGGTAAGGCATGGACCGGGTGCTAGGATTTCCTCGTTAATCGACACGGATATGCCGGCCGTGAGAAGGGTTTACAGCTCCGGTGATTTGCAGGGAAGAACAGAAAGAGGGTGCTCAAGTGAAAGCAGTTTGATAATAGAAGGAATGACCAAAGCTTGTAGATATAGTCCTGAAGAGAAGAGAGAGAGAATTGAAAGATATAAAACCAAAAGAAATCAAAGGAATTTTAATAAGAAGATCAAGTATGAATGTAGAAAAACATTGGCCGATAGTAGAAGACGAATAAGAGGAAGATTTGCAAGAAATGAAGAAATTGAAAATGGTAACTCCACCAGCTCTCCATTAGAGGCATGGAGTTGTTATGAAAATCCCATGGTGGAGGAAGACACCGTCCAAGATGATGGCTCATGGATCACCTTTCTAGATTCGTACCATCGCTAA

Coding sequence (CDS)

ATGCATAGCTTCTCCCCCGCCGTTGACACCTCCATCTTTCACCTCCACTCCCCCGACCTCATCGTGTCCCCCCCACTTTTTCCATCATTCCCTAACTTCTCATCTTCTCATTCCTCTTCCTTTCTCCTAGCATACAGCCAGCTCGCTCTGAACCCGGTGCTCGAGTCACCTGAGCTTTTACCCTCAGAGGTGATCAGTTATAGTGGTAGTAGTGGACCTTGTAGTAGCTACGGGTCTCCGACGTCATCGCAACCTTCCCTAATACAGCGGAGCATGAGTAGCCAGTCGCTCCAAAAGGATAGGGTAAGGCATGGACCGGGTGCTAGGATTTCCTCGTTAATCGACACGGATATGCCGGCCGTGAGAAGGGTTTACAGCTCCGGTGATTTGCAGGGAAGAACAGAAAGAGGGTGCTCAAGTGAAAGCAGTTTGATAATAGAAGGAATGACCAAAGCTTGTAGATATAGTCCTGAAGAGAAGAGAGAGAGAATTGAAAGATATAAAACCAAAAGAAATCAAAGGAATTTTAATAAGAAGATCAAGTATGAATGTAGAAAAACATTGGCCGATAGTAGAAGACGAATAAGAGGAAGATTTGCAAGAAATGAAGAAATTGAAAATGGTAACTCCACCAGCTCTCCATTAGAGGCATGGAGTTGTTATGAAAATCCCATGGTGGAGGAAGACACCGTCCAAGATGATGGCTCATGGATCACCTTTCTAGATTCGTACCATCGCTAA

Protein sequence

MHSFSPAVDTSIFHLHSPDLIVSPPLFPSFPNFSSSHSSSFLLAYSQLALNPVLESPELLPSEVISYSGSSGPCSSYGSPTSSQPSLIQRSMSSQSLQKDRVRHGPGARISSLIDTDMPAVRRVYSSGDLQGRTERGCSSESSLIIEGMTKACRYSPEEKRERIERYKTKRNQRNFNKKIKYECRKTLADSRRRIRGRFARNEEIENGNSTSSPLEAWSCYENPMVEEDTVQDDGSWITFLDSYHR*

Homology

[Close]

BLAST of CsaV3_1G033810 vs. NCBI nr
Match: XP_011657991.1 (two-component response regulator-like APRR9 isoform X1 [Cucumis sativus] >KGN65685.1 hypothetical protein Csa_020089 [Cucumis sativus])

HSP 1 Score: 481.9 bits (1239), Expect = 3.4e-132
Identity = 246/246 (100.00%), Postives = 246/246 (100.00%), Query Frame = 0


Query: 1   MHSFSPAVDTSIFHLHSPDLIVSPPLFPSFPNFSSSHSSSFLLAYSQLALNPVLESPELL 60
           MHSFSPAVDTSIFHLHSPDLIVSPPLFPSFPNFSSSHSSSFLLAYSQLALNPVLESPELL
Sbjct: 1   MHSFSPAVDTSIFHLHSPDLIVSPPLFPSFPNFSSSHSSSFLLAYSQLALNPVLESPELL 60

Query: 61  PSEVISYSGSSGPCSSYGSPTSSQPSLIQRSMSSQSLQKDRVRHGPGARISSLIDTDMPA 120
           PSEVISYSGSSGPCSSYGSPTSSQPSLIQRSMSSQSLQKDRVRHGPGARISSLIDTDMPA
Sbjct: 61  PSEVISYSGSSGPCSSYGSPTSSQPSLIQRSMSSQSLQKDRVRHGPGARISSLIDTDMPA 120

Query: 121 VRRVYSSGDLQGRTERGCSSESSLIIEGMTKACRYSPEEKRERIERYKTKRNQRNFNKKI 180
           VRRVYSSGDLQGRTERGCSSESSLIIEGMTKACRYSPEEKRERIERYKTKRNQRNFNKKI
Sbjct: 121 VRRVYSSGDLQGRTERGCSSESSLIIEGMTKACRYSPEEKRERIERYKTKRNQRNFNKKI 180

Query: 181 KYECRKTLADSRRRIRGRFARNEEIENGNSTSSPLEAWSCYENPMVEEDTVQDDGSWITF 240
           KYECRKTLADSRRRIRGRFARNEEIENGNSTSSPLEAWSCYENPMVEEDTVQDDGSWITF
Sbjct: 181 KYECRKTLADSRRRIRGRFARNEEIENGNSTSSPLEAWSCYENPMVEEDTVQDDGSWITF 240

Query: 241 LDSYHR 247
           LDSYHR
Sbjct: 241 LDSYHR 246

[Close]

BLAST of CsaV3_1G033810 vs. NCBI nr
Match: XP_008457517.1 (PREDICTED: zinc finger protein CONSTANS-LIKE 3-like [Cucumis melo])

HSP 1 Score: 454.1 bits (1167), Expect = 7.5e-124
Identity = 235/248 (94.76%), Postives = 242/248 (97.58%), Query Frame = 0


Query: 1   MHSFSPAVDTSIFHLHSPDLIV--SPPLFPSFPNFSSSHSSSFLLAYSQLALNPVLESPE 60
           MHSFSPAVDTSIFHLHSPDLIV  SPPLFPSFPNFSSSHSSSFLLAYSQLAL+PVLESP+
Sbjct: 1   MHSFSPAVDTSIFHLHSPDLIVSSSPPLFPSFPNFSSSHSSSFLLAYSQLALDPVLESPD 60

Query: 61  LLPSEVISYSGSSGPCSSYGSPTSSQPSLIQRSMSSQSLQKDRVRHGPGARISSLIDTDM 120
           LLP EVISYSGSSGPCSSYGSPTSSQP+LIQRSMSSQSLQKDRVRHGPGARISSLIDTDM
Sbjct: 61  LLPLEVISYSGSSGPCSSYGSPTSSQPALIQRSMSSQSLQKDRVRHGPGARISSLIDTDM 120

Query: 121 PAVRRVYSSGDLQGRTERGCSSESSLIIEGMTKACRYSPEEKRERIERYKTKRNQRNFNK 180
           PAVRRVYSSGDLQGRTERGCSSESSLIIEGMTKACRYSPEEK+ERIERYK+KRNQRNFNK
Sbjct: 121 PAVRRVYSSGDLQGRTERGCSSESSLIIEGMTKACRYSPEEKKERIERYKSKRNQRNFNK 180

Query: 181 KIKYECRKTLADSRRRIRGRFARNEEIENGNSTSSPLEAWSCYENPMVEE-DTVQDDGSW 240
           KIKYECRKTLADSRRRIRGRFARNEEIEN NSTSSPLEAWSCY+NPMV+E DT QDDGSW
Sbjct: 181 KIKYECRKTLADSRRRIRGRFARNEEIENSNSTSSPLEAWSCYDNPMVKELDTTQDDGSW 240

Query: 241 ITFLDSYH 246
           ITFLDSYH
Sbjct: 241 ITFLDSYH 248

[Close]

BLAST of CsaV3_1G033810 vs. NCBI nr
Match: XP_031738516.1 (uncharacterized protein LOC105435928 isoform X2 [Cucumis sativus])

HSP 1 Score: 364.8 bits (935), Expect = 6.0e-97
Identity = 196/246 (79.67%), Postives = 196/246 (79.67%), Query Frame = 0


Query: 1   MHSFSPAVDTSIFHLHSPDLIVSPPLFPSFPNFSSSHSSSFLLAYSQLALNPVLESPELL 60
           MHSFSPAVDTSIFHLHSPDLIVSPPLFPSFPNFSSSHSSSFLLAYSQLALNPVLESPELL
Sbjct: 1   MHSFSPAVDTSIFHLHSPDLIVSPPLFPSFPNFSSSHSSSFLLAYSQLALNPVLESPELL 60

Query: 61  PSEVISYSGSSGPCSSYGSPTSSQPSLIQRSMSSQSLQKDRVRHGPGARISSLIDTDMPA 120
           PSEVISYSGSSGPCSSYGSPTSSQPSLIQRSMSSQSLQKDRVRHGPGARISSLIDTDMPA
Sbjct: 61  PSEVISYSGSSGPCSSYGSPTSSQPSLIQRSMSSQSLQKDRVRHGPGARISSLIDTDMPA 120

Query: 121 VRRVYSSGDLQGRTERGCSSESSLIIEGMTKACRYSPEEKRERIERYKTKRNQRNFNKKI 180
           VRRVYSSGDLQ                                                 
Sbjct: 121 VRRVYSSGDLQ------------------------------------------------- 180

Query: 181 KYECRKTLADSRRRIRGRFARNEEIENGNSTSSPLEAWSCYENPMVEEDTVQDDGSWITF 240
            YECRKTLADSRRRIRGRFARNEEIENGNSTSSPLEAWSCYENPMVEEDTVQDDGSWITF
Sbjct: 181 -YECRKTLADSRRRIRGRFARNEEIENGNSTSSPLEAWSCYENPMVEEDTVQDDGSWITF 196

Query: 241 LDSYHR 247
           LDSYHR
Sbjct: 241 LDSYHR 196

[Close]

BLAST of CsaV3_1G033810 vs. NCBI nr
Match: XP_038895146.1 (zinc finger protein CONSTANS-LIKE 5-like [Benincasa hispida])

HSP 1 Score: 362.1 bits (928), Expect = 3.9e-96
Identity = 204/252 (80.95%), Postives = 212/252 (84.13%), Query Frame = 0


Query: 1   MHSFSP-----AVDTSIFHLHSPDLIVSPPLFPSFPNFSSSH--SSSFLLAYSQLA-LNP 60
           MH+FS        D S+ HLHSPD  VSPPLFPSFPNF SSH  SSS L  YSQL+ L+ 
Sbjct: 1   MHTFSTVTGTITADASLCHLHSPDHAVSPPLFPSFPNFFSSHTSSSSLLPTYSQLSELDL 60

Query: 61  VLESPELLPSEVISYSGSSGPCSSYGSPTSSQPSLIQRSMSSQSLQKDRVRHGPGARISS 120
           VLES   LPSEV SYSGSSGPCSSYGSPT SQP+LI RSMSS SLQK+RV HGPGAR SS
Sbjct: 61  VLESSGFLPSEV-SYSGSSGPCSSYGSPT-SQPALIHRSMSSHSLQKNRVSHGPGARSSS 120

Query: 121 LIDTDMPAVRRVYSSGDLQGRTERGCSSESSLIIEGMTKACRYSPEEKRERIERYKTKRN 180
           L D D PAVRRVYSSGDLQGRTERGCSSESSLIIE MTKACRYSPEEKRERIERYKTKRN
Sbjct: 121 LFDADGPAVRRVYSSGDLQGRTERGCSSESSLIIERMTKACRYSPEEKRERIERYKTKRN 180

Query: 181 QRNFNKKIKYECRKTLADSRRRIRGRFARNEEIENGNSTSSPLEAWSCYENPMVEEDTVQ 240
           QRNFNKKIKYECRKTLADSRRRIRGRFARNEE EN NSTSSP+E WS Y+N MVEEDT Q
Sbjct: 181 QRNFNKKIKYECRKTLADSRRRIRGRFARNEETENSNSTSSPVETWSYYDNAMVEEDT-Q 240

Query: 241 DDGSWITFLDSY 245
           DDGSWITFL SY
Sbjct: 241 DDGSWITFLGSY 249

[Close]

BLAST of CsaV3_1G033810 vs. NCBI nr
Match: KAG7019213.1 (Zinc finger protein CONSTANS-LIKE 5, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 288.1 bits (736), Expect = 7.1e-74
Identity = 172/248 (69.35%), Postives = 189/248 (76.21%), Query Frame = 0


Query: 1   MHSFSPA-VDTSIFHLHSPDLIVSPPLFPSFPNFSSSHSSSF--LLAYSQLALNPVLESP 60
           MH+FS A ++ S+ HL +PDL +SPPL  SFP+F SSHSSSF  LLA     L P+LESP
Sbjct: 1   MHAFSSATLEASLCHLPAPDLAMSPPLLASFPHFISSHSSSFSSLLASD---LVPMLESP 60

Query: 61  ELLPSEVISYSGSSGPCSSYGSPTSSQPSLIQRSMSSQSLQKDRVRHGPGARISSLIDTD 120
            LLPSE +SYS SSGPCSSYGSPTS      QRSM          RH P  +IS+L D +
Sbjct: 61  GLLPSE-LSYSCSSGPCSSYGSPTSKP----QRSM----------RHRPNVQISTLFDLE 120

Query: 121 MPAVRRVYSSGDLQGRTERGCSSESSLIIEGM-TKACRYSPEEKRERIERYKTKRNQRNF 180
             +VRR YS  DLQGRTE   SSESSLIIEGM TKACRYSPEEKR+RIE+YKTKRNQRNF
Sbjct: 121 -SSVRRAYSFNDLQGRTEMASSSESSLIIEGMSTKACRYSPEEKRQRIEKYKTKRNQRNF 180

Query: 181 NKKIKYECRKTLADSRRRIRGRFARNEEIENGNSTSSPLEAWSCYENPMVEEDTVQDDGS 240
           NKKIKYECRKTLADSRRRIRGRFARNEE+EN NSTSSP E WSCY+N   EE   QDDGS
Sbjct: 181 NKKIKYECRKTLADSRRRIRGRFARNEEVENSNSTSSPTETWSCYDNATAEE-VGQDDGS 228

Query: 241 WITFLDSY 245
           WITFLDSY
Sbjct: 241 WITFLDSY 228

[Close]

BLAST of CsaV3_1G033810 vs. ExPASy TrEMBL
Match: A0A0A0LUR6 (CCT domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_1G497300 PE=4 SV=1)

HSP 1 Score: 481.9 bits (1239), Expect = 1.6e-132
Identity = 246/246 (100.00%), Postives = 246/246 (100.00%), Query Frame = 0


Query: 1   MHSFSPAVDTSIFHLHSPDLIVSPPLFPSFPNFSSSHSSSFLLAYSQLALNPVLESPELL 60
           MHSFSPAVDTSIFHLHSPDLIVSPPLFPSFPNFSSSHSSSFLLAYSQLALNPVLESPELL
Sbjct: 1   MHSFSPAVDTSIFHLHSPDLIVSPPLFPSFPNFSSSHSSSFLLAYSQLALNPVLESPELL 60

Query: 61  PSEVISYSGSSGPCSSYGSPTSSQPSLIQRSMSSQSLQKDRVRHGPGARISSLIDTDMPA 120
           PSEVISYSGSSGPCSSYGSPTSSQPSLIQRSMSSQSLQKDRVRHGPGARISSLIDTDMPA
Sbjct: 61  PSEVISYSGSSGPCSSYGSPTSSQPSLIQRSMSSQSLQKDRVRHGPGARISSLIDTDMPA 120

Query: 121 VRRVYSSGDLQGRTERGCSSESSLIIEGMTKACRYSPEEKRERIERYKTKRNQRNFNKKI 180
           VRRVYSSGDLQGRTERGCSSESSLIIEGMTKACRYSPEEKRERIERYKTKRNQRNFNKKI
Sbjct: 121 VRRVYSSGDLQGRTERGCSSESSLIIEGMTKACRYSPEEKRERIERYKTKRNQRNFNKKI 180

Query: 181 KYECRKTLADSRRRIRGRFARNEEIENGNSTSSPLEAWSCYENPMVEEDTVQDDGSWITF 240
           KYECRKTLADSRRRIRGRFARNEEIENGNSTSSPLEAWSCYENPMVEEDTVQDDGSWITF
Sbjct: 181 KYECRKTLADSRRRIRGRFARNEEIENGNSTSSPLEAWSCYENPMVEEDTVQDDGSWITF 240

Query: 241 LDSYHR 247
           LDSYHR
Sbjct: 241 LDSYHR 246

[Close]

BLAST of CsaV3_1G033810 vs. ExPASy TrEMBL
Match: A0A1S3C703 (zinc finger protein CONSTANS-LIKE 3-like OS=Cucumis melo OX=3656 GN=LOC103497191 PE=4 SV=1)

HSP 1 Score: 454.1 bits (1167), Expect = 3.6e-124
Identity = 235/248 (94.76%), Postives = 242/248 (97.58%), Query Frame = 0


Query: 1   MHSFSPAVDTSIFHLHSPDLIV--SPPLFPSFPNFSSSHSSSFLLAYSQLALNPVLESPE 60
           MHSFSPAVDTSIFHLHSPDLIV  SPPLFPSFPNFSSSHSSSFLLAYSQLAL+PVLESP+
Sbjct: 1   MHSFSPAVDTSIFHLHSPDLIVSSSPPLFPSFPNFSSSHSSSFLLAYSQLALDPVLESPD 60

Query: 61  LLPSEVISYSGSSGPCSSYGSPTSSQPSLIQRSMSSQSLQKDRVRHGPGARISSLIDTDM 120
           LLP EVISYSGSSGPCSSYGSPTSSQP+LIQRSMSSQSLQKDRVRHGPGARISSLIDTDM
Sbjct: 61  LLPLEVISYSGSSGPCSSYGSPTSSQPALIQRSMSSQSLQKDRVRHGPGARISSLIDTDM 120

Query: 121 PAVRRVYSSGDLQGRTERGCSSESSLIIEGMTKACRYSPEEKRERIERYKTKRNQRNFNK 180
           PAVRRVYSSGDLQGRTERGCSSESSLIIEGMTKACRYSPEEK+ERIERYK+KRNQRNFNK
Sbjct: 121 PAVRRVYSSGDLQGRTERGCSSESSLIIEGMTKACRYSPEEKKERIERYKSKRNQRNFNK 180

Query: 181 KIKYECRKTLADSRRRIRGRFARNEEIENGNSTSSPLEAWSCYENPMVEE-DTVQDDGSW 240
           KIKYECRKTLADSRRRIRGRFARNEEIEN NSTSSPLEAWSCY+NPMV+E DT QDDGSW
Sbjct: 181 KIKYECRKTLADSRRRIRGRFARNEEIENSNSTSSPLEAWSCYDNPMVKELDTTQDDGSW 240

Query: 241 ITFLDSYH 246
           ITFLDSYH
Sbjct: 241 ITFLDSYH 248

[Close]

BLAST of CsaV3_1G033810 vs. ExPASy TrEMBL
Match: A0A6J1HLZ0 (zinc finger protein CONSTANS-LIKE 5-like OS=Cucurbita moschata OX=3662 GN=LOC111464822 PE=4 SV=1)

HSP 1 Score: 288.1 bits (736), Expect = 3.5e-74
Identity = 172/248 (69.35%), Postives = 189/248 (76.21%), Query Frame = 0


Query: 1   MHSFSPA-VDTSIFHLHSPDLIVSPPLFPSFPNFSSSHSSSF--LLAYSQLALNPVLESP 60
           MH+FS A ++ S+ HL +PDL +SPPL  SFP+F SSHSSSF  LLA     L P+LESP
Sbjct: 1   MHAFSSATLEASLCHLPAPDLAMSPPLLASFPHFISSHSSSFSSLLASD---LVPMLESP 60

Query: 61  ELLPSEVISYSGSSGPCSSYGSPTSSQPSLIQRSMSSQSLQKDRVRHGPGARISSLIDTD 120
            LLPSE +SYS SSGPCSSYGSPTS      QRSM          RH P  +IS+L D +
Sbjct: 61  GLLPSE-LSYSCSSGPCSSYGSPTSKP----QRSM----------RHRPNVQISTLFDLE 120

Query: 121 MPAVRRVYSSGDLQGRTERGCSSESSLIIEGM-TKACRYSPEEKRERIERYKTKRNQRNF 180
             +VRR YS  DLQGRTE   SSESSLIIEGM TKACRYSPEEKR+RIE+YKTKRNQRNF
Sbjct: 121 -SSVRRAYSFNDLQGRTEMASSSESSLIIEGMSTKACRYSPEEKRQRIEKYKTKRNQRNF 180

Query: 181 NKKIKYECRKTLADSRRRIRGRFARNEEIENGNSTSSPLEAWSCYENPMVEEDTVQDDGS 240
           NKKIKYECRKTLADSRRRIRGRFARNEE+EN NSTSSP E WSCY+N   EE   QDDGS
Sbjct: 181 NKKIKYECRKTLADSRRRIRGRFARNEEVENSNSTSSPTETWSCYDNATAEE-VGQDDGS 228

Query: 241 WITFLDSY 245
           WITFLDSY
Sbjct: 241 WITFLDSY 228

[Close]

BLAST of CsaV3_1G033810 vs. ExPASy TrEMBL
Match: A0A6J1I3X3 (zinc finger protein CONSTANS-LIKE 5-like isoform X1 OS=Cucurbita maxima OX=3661 GN=LOC111469436 PE=4 SV=1)

HSP 1 Score: 283.5 bits (724), Expect = 8.5e-73
Identity = 170/246 (69.11%), Postives = 187/246 (76.02%), Query Frame = 0


Query: 1   MHSFSPA-VDTSIFHLHSPDLIVSPPLFPSFPNFSSSHSSSFLLAYSQLALNPVLESPEL 60
           MH+FS A ++ S+ HL +PDL VSPPL  SFP+F SSHSS   L  S+LA  P+LE   L
Sbjct: 1   MHAFSSATLEASLCHLPTPDLAVSPPLLASFPHFISSHSS---LLASELA--PMLEPSGL 60

Query: 61  LPSEVISYSGSSGPCSSYGSPTSSQPSLIQRSMSSQSLQKDRVRHGPGARISSLIDTDMP 120
           LPSE +SYS SSGPCSSY SPTS      QRSMS          HGPG +IS L D +  
Sbjct: 61  LPSE-LSYSCSSGPCSSYESPTSKP----QRSMS----------HGPGVQISMLFDLE-S 120

Query: 121 AVRRVYSSGDLQGRTERGCSSESSLIIEGM-TKACRYSPEEKRERIERYKTKRNQRNFNK 180
           +VRR Y S DLQGRTE   S+ESSLIIEGM TKACRYSPEEKR+RIE+YKTKRNQRNFNK
Sbjct: 121 SVRRAYRSNDLQGRTEMTNSNESSLIIEGMSTKACRYSPEEKRQRIEKYKTKRNQRNFNK 180

Query: 181 KIKYECRKTLADSRRRIRGRFARNEEIENGNSTSSPLEAWSCYENPMVEEDTVQDDGSWI 240
           KIKYECRKTLADSRRRIRGRFARNEE+EN NSTSSP E WSCY+N   EED  QDDGSWI
Sbjct: 181 KIKYECRKTLADSRRRIRGRFARNEEVENSNSTSSPTETWSCYDNATTEEDG-QDDGSWI 224

Query: 241 TFLDSY 245
           TFLDSY
Sbjct: 241 TFLDSY 224

[Close]

BLAST of CsaV3_1G033810 vs. ExPASy TrEMBL
Match: A0A6J1DVX1 (uncharacterized protein LOC111023585 OS=Momordica charantia OX=3673 GN=LOC111023585 PE=4 SV=1)

HSP 1 Score: 259.6 bits (662), Expect = 1.3e-65
Identity = 165/248 (66.53%), Postives = 182/248 (73.39%), Query Frame = 0


Query: 1   MHSFSPAVDTSIFHLHSPDLIVSP-PLFPSFPNFSSSH-SSSFLLAYSQL---ALNPVLE 60
           MH  S A   ++ HLHSPD+ +SP P FPS PNFS SH S S L AY QL    L+ V E
Sbjct: 1   MHGLSAA---ALCHLHSPDIAISPLPPFPSLPNFSLSHYSPSPLSAYCQLLRCQLDSVPE 60

Query: 61  SPELLPSEVISYSGSSGPCSSYGSPTSSQPSLIQRSMSSQSLQKDRVRHGPGARISSLID 120
           S  LL SEV SYSGSSGPCSS GSPT SQP LIQRS+SS         HG   ++S+L  
Sbjct: 61  SEGLLNSEV-SYSGSSGPCSSNGSPT-SQPGLIQRSLSS---------HGLDLQLSAL-- 120

Query: 121 TDMPAVRRVYSSGDLQGRTERGCSSESSLIIEGMTKACRYSPEEKRERIERYKTKRNQRN 180
                VRRV+S+GDLQGR ERG SSESSLIIEGM KACRYSPEEKRERIERYKTKRNQRN
Sbjct: 121 ---GPVRRVHSAGDLQGRAERGWSSESSLIIEGMAKACRYSPEEKRERIERYKTKRNQRN 180

Query: 181 FNKKIKYECRKTLADSRRRIRGRFARNEEIENGNSTSSPLEAWSCYENPMVEEDTVQDDG 240
           FNKKIKYECRKTLADSRRRIRGRFARNEE E+ N T+SP+E+WS          T +DDG
Sbjct: 181 FNKKIKYECRKTLADSRRRIRGRFARNEETEHKNFTTSPVESWS--------YATGEDDG 221

Query: 241 SWITFLDS 244
           SWI+FLDS
Sbjct: 241 SWISFLDS 221

[Close]

BLAST of CsaV3_1G033810 vs. TAIR 10
Match: AT5G59990.1 (CCT motif family protein )

HSP 1 Score: 124.4 bits (311), Expect = 1.3e-28
Identity = 87/180 (48.33%), Postives = 107/180 (59.44%), Query Frame = 0


Query: 69  GSSGPCSSYGSPTSSQPSLI-QRSMSSQSLQKDRVRHGPGARISSLIDTDMPAVRRVYSS 128
           G S  C S  S  S   SL+ QRS+SS +        G        ++ D   VRR  S+
Sbjct: 73  GGSSSCDSPSSMGSGGESLVMQRSVSSHN-----GFSGNYTAAHDFVNDDDGPVRRALSA 132

Query: 129 GDLQGRTERGCS---SESSLIIEGMTKACRYSPEEKRERIERYKTKRNQRNFNKKIKYEC 188
           GDL   + R  S   SES+ IIEGM+KA +YSPEEK+E+IE+Y++KRN RNFNK+IKYEC
Sbjct: 133 GDLPRSSRRESSTVWSESNAIIEGMSKAYKYSPEEKKEKIEKYRSKRNLRNFNKRIKYEC 192

Query: 189 RKTLADSRRRIRGRFARNEEIENGNSTSSPLEAWSCYENPMVEEDTVQDDGSWITFLDSY 245
           RKTLADSR RIRGRFARN+EI             S  E   V E  V D  +W +FLDS+
Sbjct: 193 RKTLADSRPRIRGRFARNDEI-------------SQQEQVDVMEAVVGDVDTWASFLDSF 234

[Close]

BLAST of CsaV3_1G033810 vs. TAIR 10
Match: AT5G41380.1 (CCT motif family protein )

HSP 1 Score: 98.2 bits (243), Expect = 9.7e-21
Identity = 62/128 (48.44%), Postives = 76/128 (59.38%), Query Frame = 0


Query: 121 VRRVYSSGDLQGRTERGCSSESSLI---IEGMTKACRYSPEEKRERIERYKTKRNQRNFN 180
           +RRVYS+GDLQ   E   SSE+S +    E   K  RYS EE++E+I +Y+ KRNQRNF 
Sbjct: 173 MRRVYSTGDLQNNMEMQRSSENSTMPFSEEQNFKVGRYSAEERKEKISKYRAKRNQRNFT 232

Query: 181 KKIKYECRKTLADSRRRIRGRFARNEEIENGNSTSSPLEAWSCYENPMVEEDTVQDDGSW 240
           K IKY CRKTLADSR RIRGRFARN+E+                    VE   ++DD S 
Sbjct: 233 KTIKYACRKTLADSRPRIRGRFARNDEV--------------------VEIPNIEDDDSE 280

Query: 241 ITFLDSYH 246
           +  LD  H
Sbjct: 293 LWKLDGLH 280

[Close]

BLAST of CsaV3_1G033810 vs. TAIR 10
Match: AT1G63820.1 (CCT motif family protein )

HSP 1 Score: 84.0 bits (206), Expect = 1.9e-16
Identity = 55/108 (50.93%), Postives = 68/108 (62.96%), Query Frame = 0


Query: 121 VRRVYSSGDLQ--GRTERGCSSESSLII------------EGMTKACRYSPEEKRERIER 180
           +RRVYS+GDLQ  GR   G  S SS +             E   +  RYS EE++E+I +
Sbjct: 139 MRRVYSTGDLQNLGRDFTGQRSYSSPLAAESSPTTVFSGDEQSLRVGRYSSEERKEKISK 198

Query: 181 YKTKRNQRNFNKKIKYECRKTLADSRRRIRGRFARNEEI-ENGNSTSS 214
           Y+ KR QRNF K IKY CRKTLAD+R R+RGRFARN+E+ EN    SS
Sbjct: 199 YRAKRTQRNFTKTIKYACRKTLADNRPRVRGRFARNDEVFENPKIASS 246

[Close]

BLAST of CsaV3_1G033810 vs. TAIR 10
Match: AT2G33350.1 (CCT motif family protein )

HSP 1 Score: 82.8 bits (203), Expect = 4.2e-16
Identity = 54/143 (37.76%), Postives = 82/143 (57.34%), Query Frame = 0


Query: 120 AVRRVYSSGDLQGRTERGCSSESSLI------------IEG-----MTKACRYSPEEKRE 179
           +++R+++  DLQ     G  ++S L+            I G     + K  + SPE+++E
Sbjct: 254 SIKRMFNPEDLQKALGGGAENQSHLVTPQAHPALGPVDINGLEDSTLNKVGKLSPEQRKE 313

Query: 180 RIERYKTKRNQRNFNKKIKYECRKTLADSRRRIRGRFARNEEIENGNSTSSPLEAWSCYE 239
           +I RY  KRN+RNFNKKIKY CRKTLADSR R+RGRFA+N+E    N      +A+S + 
Sbjct: 314 KIRRYMKKRNERNFNKKIKYACRKTLADSRPRVRGRFAKNDEFGEPNR-----QAFSSHH 373

Query: 240 NPMVEEDT-VQDDGSWITFLDSY 245
           +   E+D  V+D+   +   D +
Sbjct: 374 DDEDEDDMGVKDEEQLVDSSDIF 391

[Close]

BLAST of CsaV3_1G033810 vs. TAIR 10
Match: AT2G33350.2 (CCT motif family protein )

HSP 1 Score: 79.3 bits (194), Expect = 4.7e-15
Identity = 54/143 (37.76%), Postives = 82/143 (57.34%), Query Frame = 0


Query: 120 AVRRVYSSGDLQGRTERGCSSESSLI------------IEG-----MTKACRYSPEEKRE 179
           +++R+++  DLQ     G  ++S L+            I G     + K  + SPE+++E
Sbjct: 254 SIKRMFNPEDLQA-LGGGAENQSHLVTPQAHPALGPVDINGLEDSTLNKVGKLSPEQRKE 313

Query: 180 RIERYKTKRNQRNFNKKIKYECRKTLADSRRRIRGRFARNEEIENGNSTSSPLEAWSCYE 239
           +I RY  KRN+RNFNKKIKY CRKTLADSR R+RGRFA+N+E    N      +A+S + 
Sbjct: 314 KIRRYMKKRNERNFNKKIKYACRKTLADSRPRVRGRFAKNDEFGEPNR-----QAFSSHH 373

Query: 240 NPMVEEDT-VQDDGSWITFLDSY 245
           +   E+D  V+D+   +   D +
Sbjct: 374 DDEDEDDMGVKDEEQLVDSSDIF 390

The following BLAST results are available for this feature:

BLAST of CsaV3_1G033810 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_011657991.1	3.4e-132	100.00	two-component response regulator-like APRR9 isoform X1 [Cucumis sativus] >KGN656...	[more]
XP_008457517.1	7.5e-124	94.76	PREDICTED: zinc finger protein CONSTANS-LIKE 3-like [Cucumis melo]	[more]
XP_031738516.1	6.0e-97	79.67	uncharacterized protein LOC105435928 isoform X2 [Cucumis sativus]	[more]
XP_038895146.1	3.9e-96	80.95	zinc finger protein CONSTANS-LIKE 5-like [Benincasa hispida]	[more]
KAG7019213.1	7.1e-74	69.35	Zinc finger protein CONSTANS-LIKE 5, partial [Cucurbita argyrosperma subsp. argy...	[more]

BLAST of CsaV3_1G033810 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of CsaV3_1G033810 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0LUR6	1.6e-132	100.00	CCT domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_1G497300 PE=4 SV...	[more]
A0A1S3C703	3.6e-124	94.76	zinc finger protein CONSTANS-LIKE 3-like OS=Cucumis melo OX=3656 GN=LOC103497191...	[more]
A0A6J1HLZ0	3.5e-74	69.35	zinc finger protein CONSTANS-LIKE 5-like OS=Cucurbita moschata OX=3662 GN=LOC111...	[more]
A0A6J1I3X3	8.5e-73	69.11	zinc finger protein CONSTANS-LIKE 5-like isoform X1 OS=Cucurbita maxima OX=3661 ...	[more]
A0A6J1DVX1	1.3e-65	66.53	uncharacterized protein LOC111023585 OS=Momordica charantia OX=3673 GN=LOC111023...	[more]

BLAST of CsaV3_1G033810 vs. TAIR 10


Match Name	E-value	Identity	Description
AT5G59990.1	1.3e-28	48.33	CCT motif family protein	[more]
AT5G41380.1	9.7e-21	48.44	CCT motif family protein	[more]
AT1G63820.1	1.9e-16	50.93	CCT motif family protein	[more]
AT2G33350.1	4.2e-16	37.76	CCT motif family protein	[more]
AT2G33350.2	4.7e-15	37.76	CCT motif family protein	[more]

InterPro

Analysis Name: InterPro Annotations of Cucumber (Chinese Long) v3
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR010402	CCT domain	PFAM	PF06203	CCT	coord: 161..202 e-value: 8.6E-17 score: 61.0
IPR010402	CCT domain	PROSITE	PS51017	CCT	coord: 160..202 score: 14.8622
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 70..100
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 70..105
None	No IPR available	PANTHER	PTHR31319:SF73	CCT MOTIF FAMILY PROTEIN	coord: 31..244
None	No IPR available	PANTHER	PTHR31319	ZINC FINGER PROTEIN CONSTANS-LIKE 4	coord: 31..244

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CsaV3_1G033810.1	CsaV3_1G033810.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
molecular_function	GO:0005515	protein binding