CsaV3_1G030100 (gene) Cucumber (Chinese Long) v3

Overview
NameCsaV3_1G030100
Typegene
OrganismCucumis sativus L. var. sativus cv. Chinese Long (Cucumber (Chinese Long) v3)
DescriptionUnknown protein
Locationchr1: 16845526 .. 16846080 (-)
RNA-Seq ExpressionCsaV3_1G030100
SyntenyCsaV3_1G030100
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
GATCACCAATTTCTCAAGATGATCTAATCTCCTATGACTTAGTGGGGCTTGACACTGGATATATTCCAATTGTGTGTGATATCGAAGGTAATAACTCTCCAACCTAGCATGTTGTTAATATTAATGGTGATTTTGGAGATGCTAGTGCAAATTATGTCTACAGCAGGCAAACCAGCAATGTTAAGAATGAGCAACAACATTGTTTTCCAAGATATAGCTCTCAAAATCATAACAACAACCCTACCTTTAACAACAATGAATTTCAAGGAAGAGGTAACAATGTTAGTGGTGGCACTTTTCAAAATCAACGAGGCAGAGGTAGGTTCAACAGTCATAGAGATAATAATTCTAAACCCACTTGTCAACTTTGTGGAACCTTTGACATTAGAATTGTTGTTTGCTACCATCGTTTTGAAGAGGAACTTAACACTCCAAGAGGAAACAACAATCAGGTGAACAATAATACAACACCCTTTATTGCTACTTCTGAAATTGTGACAAATCCAAATTGGTTGGCAGATAGTGGAGCCACAAACCATATCACCAATGATTATG

mRNA sequence

TGGGGCTTGACACTGGATATATTCCAATTGTGTGTGATATCGAAGATGCTAGTGCAAATTATGTCTACAGCAGGCAAACCAGCAATGTTAAGAATGAGCAACAACATTGTTTTCCAAGATATAGCTCTCAAAATCATAACAACAACCCTACCTTTAACAACAATGAATTTCAAGGAAGAGGTAACAATGTTAGTGGTGGCACTTTTCAAAATCAACGAGGCAGAGGTAGGTTCAACAGTCATAGAGATAATAATTCTAAACCCACTTGTCAACTTTGTGGAACCTTTGACATTAGAATTGTTGTTTGCTACCATCGTTTTGAAGAGGAACTTAACACTCCAAGAGGAAACAACAATCAGGTGA

Coding sequence (CDS)

TGGGGCTTGACACTGGATATATTCCAATTGTGTGTGATATCGAAGATGCTAGTGCAAATTATGTCTACAGCAGGCAAACCAGCAATGTTAAGAATGAGCAACAACATTGTTTTCCAAGATATAGCTCTCAAAATCATAACAACAACCCTACCTTTAACAACAATGAATTTCAAGGAAGAGGTAACAATGTTAGTGGTGGCACTTTTCAAAATCAACGAGGCAGAGGTAGGTTCAACAGTCATAGAGATAATAATTCTAAACCCACTTGTCAACTTTGTGGAACCTTTGACATTAGAATTGTTGTTTGCTACCATCGTTTTGAAGAGGAACTTAACACTCCAAGAGGAAACAACAATCAGGTGA

Protein sequence

WGLTLDIFQLCVISKMLVQIMSTAGKPAMLRMSNNIVFQDIALKIITTTLPLTTMNFKEEVTMLVVALFKINEAEVGSTVIEIIILNPLVNFVEPLTLELLFATIVLKRNLTLQEETTIR*
Homology
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BLAST of CsaV3_1G030100 vs. NCBI nr
Match: KAE8653094.1 (hypothetical protein Csa_023936, partial [Cucumis sativus])

HSP 1 Score: 218.0 bits (554), Expect = 4.4e-53
Identity = 120/120 (100.00%), Postives = 120/120 (100.00%), Query Frame = 0 

Query: 1   WGLTLDIFQLCVISKMLVQIMSTAGKPAMLRMSNNIVFQDIALKIITTTLPLTTMNFKEE 60
           WGLTLDIFQLCVISKMLVQIMSTAGKPAMLRMSNNIVFQDIALKIITTTLPLTTMNFKEE
Sbjct: 1   WGLTLDIFQLCVISKMLVQIMSTAGKPAMLRMSNNIVFQDIALKIITTTLPLTTMNFKEE 60

Query: 61  VTMLVVALFKINEAEVGSTVIEIIILNPLVNFVEPLTLELLFATIVLKRNLTLQEETTIR 120
           VTMLVVALFKINEAEVGSTVIEIIILNPLVNFVEPLTLELLFATIVLKRNLTLQEETTIR
Sbjct: 61  VTMLVVALFKINEAEVGSTVIEIIILNPLVNFVEPLTLELLFATIVLKRNLTLQEETTIR 120

The following BLAST results are available for this feature:
BLAST of CsaV3_1G030100 vs. NCBI nr
Match NameE-valueIdentityDescription
KAE8653094.14.4e-53100.00hypothetical protein Csa_023936, partial [Cucumis sativus][more]
BLAST of CsaV3_1G030100 vs. NCBI nr
Match NameE-valueIdentityDescription
BLAST of CsaV3_1G030100 vs. NCBI nr
Match NameE-valueIdentityDescription
BLAST of CsaV3_1G030100 vs. NCBI nr
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CsaV3_1G030100.1CsaV3_1G030100.1mRNA