CsaV3_1G029590 (gene) Cucumber (Chinese Long) v3

Overview


Name	CsaV3_1G029590
Type	gene
Organism	Cucumis sativus L. var. sativus cv. Chinese Long (Cucumber (Chinese Long) v3)
Description	60S ribosomal protein L39
Location	chr1: 16378717 .. 16379583 (-)
RNA-Seq Expression	CsaV3_1G029590
Synteny	CsaV3_1G029590

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGCTGCCAGCCGTCCATCTCTCCGTCCGCTTGCTTCCATTGTCGTCGACGACGTCTACCCACCCCAAAGAACCCTGCACGCGAAGTCAATCTTTTGGAAACCCCGGCCCATCGTTCGAAACGCTCACCTCCATTCGTAAAAACCCATTCGAAACCCCCACCACACCGAAACCCTCTGCCGCCGGCCGTTCACAACTCCGACCGCTTGCTTCCATTGTCGTCGACGACGTCTACCCACCCCAAAGAACCCCCGCGCGCGAAATCAATCTTTTGGAAACCCCGACCCATCTGTTCGAAACGCTCACCTCCATTAGAAAAAACCCATTCGAAACCCCCCACACACACCGAAACCCCTCTGCAACCGGTCGTCCACAACTCCGACCGCTTGCTTCCATTGTCGTCGACGACGTCTACCCACCCCAAAGAACCCCGCGCGCGAAGTCAATCTTTTGGAAGCCCCGGCCCATCCGTTTGAAACGCTCACCTCCATTCGAAAAAACCCATTCGAAACCCCCCACACACATCGAAACCCTCTGCCGCCAGACGTCCACAAATCCGACCGTTTGCTGCCAATGTCGTCGACGACGTCTGCCCACCCCAAAGGACGAGCTGCACGCGAAGTCAATCTTTTGGAAACCCCTGCCCATCCGTTCGAAACGCTCACCTCCATTCGAAAAAATCTATTCGAAACCCCCCACACTCACAGTTCATCGTCGGAACCTGAAAATGTTGTCTCATAAAACTTTTATAATGAAGAAGAAGTTCGCGAAGAAGAAGAGGCAGAATAGGCCGACCCCGCACTGGATCCGCCTGAGAATTGACAACACGAGGCAAAGTGCGCAACGTCGCACAAAGCTAGGGTTCTAA

mRNA sequence

ATGCTGCCAGCCGTCCATCTCTCCGTCCGCTTGCTTCCATTGTCGTCGACGACGTCTACCCACCCCAAAGAACCCTGCACGCGAAGTCAATCTTTTGGAAACCCCGGCCCATCGTTCGAAACGCTCACCTCCATTCGTAAAAACCCATTCGAAACCCCCACCACACCGAAACCCTCTGCCGCCGGCCGTTCACAACTCCGACCGCTTGCTTCCATTGTCGTCGACGACGTCTACCCACCCCAAAGAACCCCCGCGCGCGAAATCAATCTTTTGGAAACCCCGACCCATCTGTTCGAAACGCTCACCTCCATTAGAAAAAACCCATTCGAAACCCCCCACACACACCGAAACCCCTCTGCAACCGGTCGTCCACAACTCCGACCGCTTGCTTCCATTGTCGTCGACGACGTCTACCCACCCCAAAGAACCCCGCGCGCGAAGTCAATCTTTTGGAAGCCCCGGCCCATCCGTTTGAAACGCTCACCTCCATTCGAAAAAACCCATTCGAAACCCCCCACACACATCGAAACCCTCTGCCGCCAGACGTCCACAAATCCGACCGTTTGCTGCCAATGTCGTCGACGACGTCTGCCCACCCCAAAGGACGAGCTGCACGCGAAGTCAATCTTTTGGAAACCCCTGCCCATCCGTTCGAAACGCTCACCTCCATTCGAAAAAATCTATTCGAAACCCCCCACACTCACAGTTCATCGTCGGAACCTGAAAATGTTGTCTCATAAAACTTTTATAATGAAGAAGAAGTTCGCGAAGAAGAAGAGGCAGAATAGGCCGACCCCGCACTGGATCCGCCTGAGAATTGACAACACGAGGCAAAGTGCGCAACGTCGCACAAAGCTAGGGTTCTAA

Coding sequence (CDS)

ATGCTGCCAGCCGTCCATCTCTCCGTCCGCTTGCTTCCATTGTCGTCGACGACGTCTACCCACCCCAAAGAACCCTGCACGCGAAGTCAATCTTTTGGAAACCCCGGCCCATCGTTCGAAACGCTCACCTCCATTCGTAAAAACCCATTCGAAACCCCCACCACACCGAAACCCTCTGCCGCCGGCCGTTCACAACTCCGACCGCTTGCTTCCATTGTCGTCGACGACGTCTACCCACCCCAAAGAACCCCCGCGCGCGAAATCAATCTTTTGGAAACCCCGACCCATCTGTTCGAAACGCTCACCTCCATTAGAAAAAACCCATTCGAAACCCCCCACACACACCGAAACCCCTCTGCAACCGGTCGTCCACAACTCCGACCGCTTGCTTCCATTGTCGTCGACGACGTCTACCCACCCCAAAGAACCCCGCGCGCGAAGTCAATCTTTTGGAAGCCCCGGCCCATCCGTTTGAAACGCTCACCTCCATTCGAAAAAACCCATTCGAAACCCCCCACACACATCGAAACCCTCTGCCGCCAGACGTCCACAAATCCGACCGTTTGCTGCCAATGTCGTCGACGACGTCTGCCCACCCCAAAGGACGAGCTGCACGCGAAGTCAATCTTTTGGAAACCCCTGCCCATCCGTTCGAAACGCTCACCTCCATTCGAAAAAATCTATTCGAAACCCCCCACACTCACAGTTCATCGTCGGAACCTGAAAATGTTGTCTCATAAAACTTTTATAATGAAGAAGAAGTTCGCGAAGAAGAAGAGGCAGAATAGGCCGACCCCGCACTGGATCCGCCTGAGAATTGACAACACGAGGCAAAGTGCGCAACGTCGCACAAAGCTAGGGTTCTAA

Protein sequence

MLPAVHLSVRLLPLSSTTSTHPKEPCTRSQSFGNPGPSFETLTSIRKNPFETPTTPKPSAAGRSQLRPLASIVVDDVYPPQRTPAREINLLETPTHLFETLTSIRKNPFETPHTHRNPSATGRPQLRPLASIVVDDVYPPQRTPRAKSIFWKPRPIRLKRSPPFEKTHSKPPTHIETLCRQTSTNPTVCCQCRRRRLPTPKDELHAKSIFWKPLPIRSKRSPPFEKIYSKPPTLTVHRRNLKMLSHKTFIMKKKFAKKKRQNRPTPHWIRLRIDNTRQSAQRRTKLGF*

Homology

[Close]

BLAST of CsaV3_1G029590 vs. NCBI nr
Match: KAE8653071.1 (hypothetical protein Csa_020114 [Cucumis sativus])

HSP 1 Score: 585.1 bits (1507), Expect = 3.3e-163
Identity = 288/288 (100.00%), Postives = 288/288 (100.00%), Query Frame = 0


Query: 1   MLPAVHLSVRLLPLSSTTSTHPKEPCTRSQSFGNPGPSFETLTSIRKNPFETPTTPKPSA 60
           MLPAVHLSVRLLPLSSTTSTHPKEPCTRSQSFGNPGPSFETLTSIRKNPFETPTTPKPSA
Sbjct: 1   MLPAVHLSVRLLPLSSTTSTHPKEPCTRSQSFGNPGPSFETLTSIRKNPFETPTTPKPSA 60

Query: 61  AGRSQLRPLASIVVDDVYPPQRTPAREINLLETPTHLFETLTSIRKNPFETPHTHRNPSA 120
           AGRSQLRPLASIVVDDVYPPQRTPAREINLLETPTHLFETLTSIRKNPFETPHTHRNPSA
Sbjct: 61  AGRSQLRPLASIVVDDVYPPQRTPAREINLLETPTHLFETLTSIRKNPFETPHTHRNPSA 120

Query: 121 TGRPQLRPLASIVVDDVYPPQRTPRAKSIFWKPRPIRLKRSPPFEKTHSKPPTHIETLCR 180
           TGRPQLRPLASIVVDDVYPPQRTPRAKSIFWKPRPIRLKRSPPFEKTHSKPPTHIETLCR
Sbjct: 121 TGRPQLRPLASIVVDDVYPPQRTPRAKSIFWKPRPIRLKRSPPFEKTHSKPPTHIETLCR 180

Query: 181 QTSTNPTVCCQCRRRRLPTPKDELHAKSIFWKPLPIRSKRSPPFEKIYSKPPTLTVHRRN 240
           QTSTNPTVCCQCRRRRLPTPKDELHAKSIFWKPLPIRSKRSPPFEKIYSKPPTLTVHRRN
Sbjct: 181 QTSTNPTVCCQCRRRRLPTPKDELHAKSIFWKPLPIRSKRSPPFEKIYSKPPTLTVHRRN 240

Query: 241 LKMLSHKTFIMKKKFAKKKRQNRPTPHWIRLRIDNTRQSAQRRTKLGF 289
           LKMLSHKTFIMKKKFAKKKRQNRPTPHWIRLRIDNTRQSAQRRTKLGF
Sbjct: 241 LKMLSHKTFIMKKKFAKKKRQNRPTPHWIRLRIDNTRQSAQRRTKLGF 288

[Close]

BLAST of CsaV3_1G029590 vs. NCBI nr
Match: XP_011656152.1 (60S ribosomal protein L39-1-like [Cucumis sativus])

HSP 1 Score: 95.5 bits (236), Expect = 7.9e-16
Identity = 46/46 (100.00%), Postives = 46/46 (100.00%), Query Frame = 0


Query: 243 MLSHKTFIMKKKFAKKKRQNRPTPHWIRLRIDNTRQSAQRRTKLGF 289
           MLSHKTFIMKKKFAKKKRQNRPTPHWIRLRIDNTRQSAQRRTKLGF
Sbjct: 1   MLSHKTFIMKKKFAKKKRQNRPTPHWIRLRIDNTRQSAQRRTKLGF 46

[Close]

BLAST of CsaV3_1G029590 vs. NCBI nr
Match: XP_011657167.1 (60S ribosomal protein L39-like [Cucumis sativus])

HSP 1 Score: 80.1 bits (196), Expect = 3.4e-11
Identity = 41/49 (83.67%), Postives = 42/49 (85.71%), Query Frame = 0


Query: 243 MLSHKTFIMKKKFAKKKRQNRPTPHWIRLRIDN---TRQSAQRRTKLGF 289
           MLSHKTF MKKK  KKKRQNRPTPHWIRLR DN   TR+SAQRRTKLGF
Sbjct: 1   MLSHKTFRMKKKLLKKKRQNRPTPHWIRLRTDNTIDTRESAQRRTKLGF 49

[Close]

BLAST of CsaV3_1G029590 vs. NCBI nr
Match: XP_011657256.1 (60S ribosomal protein L39-like [Cucumis sativus])

HSP 1 Score: 77.4 bits (189), Expect = 2.2e-10
Identity = 41/49 (83.67%), Postives = 42/49 (85.71%), Query Frame = 0


Query: 243 MLSHKTFIMKKKFAKKKRQNRPTPHWIRLRIDN---TRQSAQRRTKLGF 289
           MLSHKTF MKKK AKKKRQNRPT +WIRLR DN   TRQSAQRRTKLGF
Sbjct: 1   MLSHKTFRMKKKLAKKKRQNRPTSNWIRLRTDNTIDTRQSAQRRTKLGF 49

[Close]

BLAST of CsaV3_1G029590 vs. NCBI nr
Match: CDP02331.1 (unnamed protein product [Coffea canephora])

HSP 1 Score: 70.1 bits (170), Expect = 3.6e-08
Identity = 38/63 (60.32%), Postives = 48/63 (76.19%), Query Frame = 0


Query: 231 PPTLTVHRRNLKMLSHKTFIMKKKFAKKKRQNRPTPHWIRLRIDNT-RQSAQ----RRTK 289
           PP L+ + +  KM SHKTF++KKK AKK+RQNRP P+WIR+R DNT R +A+    RRTK
Sbjct: 20  PPVLSFNLQQPKMPSHKTFMIKKKLAKKQRQNRPIPYWIRMRTDNTIRYNAKRRHWRRTK 79

[Close]

BLAST of CsaV3_1G029590 vs. ExPASy Swiss-Prot
Match: P51424 (60S ribosomal protein L39-1 OS=Arabidopsis thaliana OX=3702 GN=RPL39A PE=3 SV=2)

HSP 1 Score: 62.8 bits (151), Expect = 7.5e-09
Identity = 34/51 (66.67%), Postives = 39/51 (76.47%), Query Frame = 0


Query: 243 MLSHKTFIMKKKFAKKKRQNRPTPHWIRLRIDNT-RQSAQ----RRTKLGF 289
           M SHK+F++KKK  KK RQNRP PHWIRLR DNT R +A+    RRTKLGF
Sbjct: 1   MPSHKSFMIKKKLGKKMRQNRPIPHWIRLRTDNTIRYNAKRRHWRRTKLGF 51

[Close]

BLAST of CsaV3_1G029590 vs. ExPASy Swiss-Prot
Match: Q6KAJ8 (60S ribosomal protein L39-1 OS=Oryza sativa subsp. japonica OX=39947 GN=RPL39A PE=3 SV=2)

HSP 1 Score: 61.2 bits (147), Expect = 2.2e-08
Identity = 34/51 (66.67%), Postives = 39/51 (76.47%), Query Frame = 0


Query: 243 MLSHKTFIMKKKFAKKKRQNRPTPHWIRLRIDNT-RQSAQ----RRTKLGF 289
           M SHKTF +KKK AKK RQNRP P+WIR+R DNT R +A+    RRTKLGF
Sbjct: 1   MPSHKTFRIKKKLAKKMRQNRPIPYWIRMRTDNTIRYNAKRRHWRRTKLGF 51

[Close]

BLAST of CsaV3_1G029590 vs. ExPASy Swiss-Prot
Match: P51426 (60S ribosomal protein L39-2 OS=Oryza sativa subsp. japonica OX=39947 GN=RPL39B PE=3 SV=2)

HSP 1 Score: 61.2 bits (147), Expect = 2.2e-08
Identity = 34/51 (66.67%), Postives = 39/51 (76.47%), Query Frame = 0


Query: 243 MLSHKTFIMKKKFAKKKRQNRPTPHWIRLRIDNT-RQSAQ----RRTKLGF 289
           M SHKTF +KKK AKK RQNRP P+WIR+R DNT R +A+    RRTKLGF
Sbjct: 1   MPSHKTFRIKKKLAKKMRQNRPIPYWIRMRTDNTIRYNAKRRHWRRTKLGF 51

[Close]

BLAST of CsaV3_1G029590 vs. ExPASy Swiss-Prot
Match: Q5SMI4 (60S ribosomal protein L39-3 OS=Oryza sativa subsp. japonica OX=39947 GN=RPL39C PE=3 SV=1)

HSP 1 Score: 61.2 bits (147), Expect = 2.2e-08
Identity = 34/51 (66.67%), Postives = 39/51 (76.47%), Query Frame = 0


Query: 243 MLSHKTFIMKKKFAKKKRQNRPTPHWIRLRIDNT-RQSAQ----RRTKLGF 289
           M SHKTF +KKK AKK RQNRP P+WIR+R DNT R +A+    RRTKLGF
Sbjct: 1   MPSHKTFQIKKKLAKKMRQNRPIPYWIRMRTDNTIRYNAKRRHWRRTKLGF 51

[Close]

BLAST of CsaV3_1G029590 vs. ExPASy Swiss-Prot
Match: P51425 (60S ribosomal protein L39 OS=Zea mays OX=4577 GN=RPL39 PE=3 SV=1)

HSP 1 Score: 61.2 bits (147), Expect = 2.2e-08
Identity = 34/51 (66.67%), Postives = 39/51 (76.47%), Query Frame = 0


Query: 243 MLSHKTFIMKKKFAKKKRQNRPTPHWIRLRIDNT-RQSAQ----RRTKLGF 289
           M SHKTF +KKK AKK RQNRP P+WIR+R DNT R +A+    RRTKLGF
Sbjct: 1   MPSHKTFRIKKKLAKKMRQNRPIPYWIRMRTDNTIRYNAKRRHWRRTKLGF 51

[Close]

BLAST of CsaV3_1G029590 vs. ExPASy TrEMBL
Match: A0A0A0LWC3 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G298170 PE=4 SV=1)

HSP 1 Score: 289.3 bits (739), Expect = 1.8e-74
Identity = 156/188 (82.98%), Postives = 158/188 (84.04%), Query Frame = 0


Query: 1   MLPAVHLSVRLLPLSSTTSTHPKEPCTRSQSFGNPGPSFETLTSIRKNPFETPTTPKPSA 60
           MLPAVHLSVRLLPLSSTTSTHPKEPCTRSQSFGNPGPSFETLTSIRKNPFETPTTPKPSA
Sbjct: 1   MLPAVHLSVRLLPLSSTTSTHPKEPCTRSQSFGNPGPSFETLTSIRKNPFETPTTPKPSA 60

Query: 61  AGRSQLRPLASIVVDDVYPPQRTPAREINLLETPTHLFETLTSIRKNPFETPHTHRNPSA 120
           AGRSQLRPLASIVVDDVYPPQRTPAREINLLETPTHLFETLTSIRKNPFETPHTHRNPSA
Sbjct: 61  AGRSQLRPLASIVVDDVYPPQRTPAREINLLETPTHLFETLTSIRKNPFETPHTHRNPSA 120

Query: 121 TGRPQLRPLASIVVDDVYPPQRTPRAKSIFWKPRPIRLKRSP--PFEKTHSKPPTHIETL 180
           TGRPQLRPLASIVVDDVYPPQRTP         R + L  +P  PFE   S      ET 
Sbjct: 121 TGRPQLRPLASIVVDDVYPPQRTP--------AREVNLLEAPAHPFETLTSIRKNPFET- 178

Query: 181 CRQTSTNP 187
              T  NP
Sbjct: 181 -PHTHRNP 178

[Close]

BLAST of CsaV3_1G029590 vs. ExPASy TrEMBL
Match: A0A068U1E6 (Uncharacterized protein OS=Coffea canephora OX=49390 GN=GSCOC_T00039692001 PE=3 SV=1)

HSP 1 Score: 70.1 bits (170), Expect = 1.7e-08
Identity = 38/63 (60.32%), Postives = 48/63 (76.19%), Query Frame = 0


Query: 231 PPTLTVHRRNLKMLSHKTFIMKKKFAKKKRQNRPTPHWIRLRIDNT-RQSAQ----RRTK 289
           PP L+ + +  KM SHKTF++KKK AKK+RQNRP P+WIR+R DNT R +A+    RRTK
Sbjct: 20  PPVLSFNLQQPKMPSHKTFMIKKKLAKKQRQNRPIPYWIRMRTDNTIRYNAKRRHWRRTK 79

[Close]

BLAST of CsaV3_1G029590 vs. ExPASy TrEMBL
Match: A0A5A7QW61 (60S ribosomal protein L39 OS=Striga asiatica OX=4170 GN=STAS_26521 PE=3 SV=1)

HSP 1 Score: 68.6 bits (166), Expect = 5.0e-08
Identity = 38/56 (67.86%), Postives = 44/56 (78.57%), Query Frame = 0


Query: 238 RRNLKMLSHKTFIMKKKFAKKKRQNRPTPHWIRLRIDNT-RQSAQ----RRTKLGF 289
           RRN  M SHKTF++KKK AKK+RQNRP P+WIRLR DNT R +A+    RRTKLGF
Sbjct: 312 RRNSTMPSHKTFMIKKKLAKKQRQNRPIPYWIRLRTDNTIRYNAKRRHWRRTKLGF 367

[Close]

BLAST of CsaV3_1G029590 vs. ExPASy TrEMBL
Match: A0A368RK84 (Uncharacterized protein OS=Setaria italica OX=4555 GN=SETIT_6G104600v2 PE=3 SV=1)

HSP 1 Score: 68.2 bits (165), Expect = 6.6e-08
Identity = 40/72 (55.56%), Postives = 47/72 (65.28%), Query Frame = 0


Query: 222 PPFEKIYSKPPTLTVHRRNLKMLSHKTFIMKKKFAKKKRQNRPTPHWIRLRIDNT-RQSA 281
           P F   +  PP   +  R  KM SHKTF +KKK AKK RQNRP P+WIR+R DNT R +A
Sbjct: 27  PGFSPPHPPPPLFVLDCRFSKMPSHKTFQIKKKLAKKMRQNRPIPYWIRMRTDNTIRYNA 86

Query: 282 Q----RRTKLGF 289
           +    RRTKLGF
Sbjct: 87  KRRHWRRTKLGF 98

[Close]

BLAST of CsaV3_1G029590 vs. ExPASy TrEMBL
Match: A0A7J6DYP0 (Uncharacterized protein OS=Cannabis sativa OX=3483 GN=F8388_000760 PE=3 SV=1)

HSP 1 Score: 68.2 bits (165), Expect = 6.6e-08
Identity = 40/65 (61.54%), Postives = 47/65 (72.31%), Query Frame = 0


Query: 229 SKPPTLTVHRRNLKMLSHKTFIMKKKFAKKKRQNRPTPHWIRLRIDNT-RQSAQ----RR 288
           S+PPT      + KM SHK+F++KKK AKK RQNRP PHWIRLR DNT R +A+    RR
Sbjct: 169 SQPPT------SAKMPSHKSFMIKKKLAKKMRQNRPIPHWIRLRTDNTIRYNAKRRHWRR 227

[Close]

BLAST of CsaV3_1G029590 vs. TAIR 10
Match: AT4G31985.1 (Ribosomal protein L39 family protein )

HSP 1 Score: 62.8 bits (151), Expect = 5.3e-10
Identity = 34/51 (66.67%), Postives = 39/51 (76.47%), Query Frame = 0


Query: 243 MLSHKTFIMKKKFAKKKRQNRPTPHWIRLRIDNT-RQSAQ----RRTKLGF 289
           M SHK+F++KKK  KK RQNRP PHWIRLR DNT R +A+    RRTKLGF
Sbjct: 1   MPSHKSFMIKKKLGKKMRQNRPIPHWIRLRTDNTIRYNAKRRHWRRTKLGF 51

[Close]

BLAST of CsaV3_1G029590 vs. TAIR 10
Match: AT3G02190.1 (Ribosomal protein L39 family protein )

HSP 1 Score: 57.8 bits (138), Expect = 1.7e-08
Identity = 30/51 (58.82%), Postives = 36/51 (70.59%), Query Frame = 0


Query: 243 MLSHKTFIMKKKFAKKKRQNRPTPHWIRLRID-----NTRQSAQRRTKLGF 289
           M SHK+F++KKK  KK RQNRP P+WIRLR D     N ++   RRTKLGF
Sbjct: 1   MPSHKSFMIKKKLGKKMRQNRPIPNWIRLRTDNKIRYNAKRRHWRRTKLGF 51

[Close]

BLAST of CsaV3_1G029590 vs. TAIR 10
Match: AT2G25210.1 (Ribosomal protein L39 family protein )

HSP 1 Score: 53.1 bits (126), Expect = 4.2e-07
Identity = 29/44 (65.91%), Postives = 33/44 (75.00%), Query Frame = 0


Query: 250 IMKKKFAKKKRQNRPTPHWIRLRIDNT-RQSAQ----RRTKLGF 289
           ++KKK  KK RQNRP PHWIRLR DNT R +A+    RRTKLGF
Sbjct: 1   MIKKKLGKKMRQNRPIPHWIRLRTDNTIRYNAKRRHWRRTKLGF 44

The following BLAST results are available for this feature:

BLAST of CsaV3_1G029590 vs. NCBI nr


Match Name	E-value	Identity	Description
KAE8653071.1	3.3e-163	100.00	hypothetical protein Csa_020114 [Cucumis sativus]	[more]
XP_011656152.1	7.9e-16	100.00	60S ribosomal protein L39-1-like [Cucumis sativus]	[more]
XP_011657167.1	3.4e-11	83.67	60S ribosomal protein L39-like [Cucumis sativus]	[more]
XP_011657256.1	2.2e-10	83.67	60S ribosomal protein L39-like [Cucumis sativus]	[more]
CDP02331.1	3.6e-08	60.32	unnamed protein product [Coffea canephora]	[more]

BLAST of CsaV3_1G029590 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
P51424	7.5e-09	66.67	60S ribosomal protein L39-1 OS=Arabidopsis thaliana OX=3702 GN=RPL39A PE=3 SV=2	[more]
Q6KAJ8	2.2e-08	66.67	60S ribosomal protein L39-1 OS=Oryza sativa subsp. japonica OX=39947 GN=RPL39A P...	[more]
P51426	2.2e-08	66.67	60S ribosomal protein L39-2 OS=Oryza sativa subsp. japonica OX=39947 GN=RPL39B P...	[more]
Q5SMI4	2.2e-08	66.67	60S ribosomal protein L39-3 OS=Oryza sativa subsp. japonica OX=39947 GN=RPL39C P...	[more]
P51425	2.2e-08	66.67	60S ribosomal protein L39 OS=Zea mays OX=4577 GN=RPL39 PE=3 SV=1	[more]

BLAST of CsaV3_1G029590 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0LWC3	1.8e-74	82.98	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G298170 PE=4 SV=1	[more]
A0A068U1E6	1.7e-08	60.32	Uncharacterized protein OS=Coffea canephora OX=49390 GN=GSCOC_T00039692001 PE=3 ...	[more]
A0A5A7QW61	5.0e-08	67.86	60S ribosomal protein L39 OS=Striga asiatica OX=4170 GN=STAS_26521 PE=3 SV=1	[more]
A0A368RK84	6.6e-08	55.56	Uncharacterized protein OS=Setaria italica OX=4555 GN=SETIT_6G104600v2 PE=3 SV=1	[more]
A0A7J6DYP0	6.6e-08	61.54	Uncharacterized protein OS=Cannabis sativa OX=3483 GN=F8388_000760 PE=3 SV=1	[more]

BLAST of CsaV3_1G029590 vs. TAIR 10


Match Name	E-value	Identity	Description
AT4G31985.1	5.3e-10	66.67	Ribosomal protein L39 family protein	[more]
AT3G02190.1	1.7e-08	58.82	Ribosomal protein L39 family protein	[more]
AT2G25210.1	4.2e-07	65.91	Ribosomal protein L39 family protein	[more]

InterPro

Analysis Name: InterPro Annotations of Cucumber (Chinese Long) v3
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR000077	Ribosomal protein L39e	PFAM	PF00832	Ribosomal_L39	coord: 251..283 e-value: 1.4E-5 score: 24.6
IPR023626	Ribosomal protein L39e domain superfamily	GENE3D	1.10.1620.10	Ribosomal protein L39e	coord: 243..288 e-value: 7.4E-12 score: 47.1
IPR023626	Ribosomal protein L39e domain superfamily	SUPERFAMILY	48662	Ribosomal protein L39e	coord: 245..282
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 16..66
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 16..61
None	No IPR available	PANTHER	PTHR19970:SF24	60S RIBOSOMAL PROTEIN L39-2	coord: 217..288
None	No IPR available	PANTHER	PTHR19970	RIBOSOMAL PROTEIN L39E	coord: 217..288

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CsaV3_1G029590.1	CsaV3_1G029590.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006412	translation
cellular_component	GO:0005840	ribosome
molecular_function	GO:0003735	structural constituent of ribosome