CsaV3_1G028380 (gene) Cucumber (Chinese Long) v3

Overview


Name	CsaV3_1G028380
Type	gene
Organism	Cucumis sativus L. var. sativus cv. Chinese Long (Cucumber (Chinese Long) v3)
Description	Serine-rich protein-related
Location	chr1: 15411825 .. 15412327 (-)
RNA-Seq Expression	CsaV3_1G028380
Synteny	CsaV3_1G028380

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCCTCAAAATCTGGATCCTCCACTCACAAATTCCCGACCAACGGCGCTTCTCGGAAGTGTCTCTGTTCTCCTACCACCCATCCCGGCTCTTTCCGCTGCAGTTTTCACCGGAACCGCCACAAGATCTCCTCCTCTAGGTCTTCATCTTCATCCCTTTCCCTCATTACCACTGCCGACTTGGAGCTTGCAAAGGCTAATGCCTTGAGATCATTTCTGCTCCAGATGATTAAGCCCTCCAGTAACGATCTTCAACGGCGGAGGAATTTTCATCCTCGACCTTCCAGGTTTTGTTTGATGAACGATCATGCAACTGGATTGGCTGTTTCTTGAATTCCCCCTTTTTTTTAGTTGCTTAATCAGTCGTTTGTACGTGTAGTAGATCTGGATGTCTGTTTTTGTTCCTGATTTCGATCTTCTTCCTTCGCTGAATTTCCAGATGAGTTTGTAGATATAGTACTCTGTTTGTGTACAGATTATTTCGAGACGACATTGGATCTTGA

mRNA sequence

ATGGCCTCAAAATCTGGATCCTCCACTCACAAATTCCCGACCAACGGCGCTTCTCGGAAGTGTCTCTGTTCTCCTACCACCCATCCCGGCTCTTTCCGCTGCAGTTTTCACCGGAACCGCCACAAGATCTCCTCCTCTAGGTCTTCATCTTCATCCCTTTCCCTCATTACCACTGCCGACTTGGAGCTTGCAAAGGCTAATGCCTTGAGATCATTTCTGCTCCAGATGATTAAGCCCTCCAGTAACGATCTTCAACGGCGGAGGAATTTTCATCCTCGACCTTCCAGATTATTTCGAGACGACATTGGATCTTGA

Coding sequence (CDS)

ATGGCCTCAAAATCTGGATCCTCCACTCACAAATTCCCGACCAACGGCGCTTCTCGGAAGTGTCTCTGTTCTCCTACCACCCATCCCGGCTCTTTCCGCTGCAGTTTTCACCGGAACCGCCACAAGATCTCCTCCTCTAGGTCTTCATCTTCATCCCTTTCCCTCATTACCACTGCCGACTTGGAGCTTGCAAAGGCTAATGCCTTGAGATCATTTCTGCTCCAGATGATTAAGCCCTCCAGTAACGATCTTCAACGGCGGAGGAATTTTCATCCTCGACCTTCCAGATTATTTCGAGACGACATTGGATCTTGA

Protein sequence

MASKSGSSTHKFPTNGASRKCLCSPTTHPGSFRCSFHRNRHKISSSRSSSSSLSLITTADLELAKANALRSFLLQMIKPSSNDLQRRRNFHPRPSRLFRDDIGS*

Homology

[Close]

BLAST of CsaV3_1G028380 vs. NCBI nr
Match: KAE8653030.1 (hypothetical protein Csa_019924 [Cucumis sativus])

HSP 1 Score: 203.4 bits (516), Expect = 9.8e-49
Identity = 104/104 (100.00%), Postives = 104/104 (100.00%), Query Frame = 0


Query: 1   MASKSGSSTHKFPTNGASRKCLCSPTTHPGSFRCSFHRNRHKISSSRSSSSSLSLITTAD 60
           MASKSGSSTHKFPTNGASRKCLCSPTTHPGSFRCSFHRNRHKISSSRSSSSSLSLITTAD
Sbjct: 1   MASKSGSSTHKFPTNGASRKCLCSPTTHPGSFRCSFHRNRHKISSSRSSSSSLSLITTAD 60

Query: 61  LELAKANALRSFLLQMIKPSSNDLQRRRNFHPRPSRLFRDDIGS 105
           LELAKANALRSFLLQMIKPSSNDLQRRRNFHPRPSRLFRDDIGS
Sbjct: 61  LELAKANALRSFLLQMIKPSSNDLQRRRNFHPRPSRLFRDDIGS 104

[Close]

BLAST of CsaV3_1G028380 vs. NCBI nr
Match: XP_008443918.1 (PREDICTED: uncharacterized protein LOC103487396 [Cucumis melo] >KAA0050057.1 Serine-rich protein-related [Cucumis melo var. makuwa] >TYK14152.1 Serine-rich protein-related [Cucumis melo var. makuwa])

HSP 1 Score: 154.1 bits (388), Expect = 6.8e-34
Identity = 80/96 (83.33%), Postives = 85/96 (88.54%), Query Frame = 0


Query: 1  MASKSGSSTHKFPTNGASRKCLCSPTTHPGSFRCSFHRNRHKISSSRSSSSSLSLITTAD 60
          MASKSGSSTHKFP+   SRKCLCSPTTHPGSFRCSFHR RHKISS+RSSSS       A+
Sbjct: 1  MASKSGSSTHKFPSTAGSRKCLCSPTTHPGSFRCSFHRTRHKISSTRSSSS-------AE 60

Query: 61 LELAKANALRSFLLQMIKPSSNDLQRRRNFHPRPSR 97
          LELAKANALR+FLLQMIKPSSND+QRRRNFHPRPSR
Sbjct: 61 LELAKANALRAFLLQMIKPSSNDVQRRRNFHPRPSR 89

[Close]

BLAST of CsaV3_1G028380 vs. NCBI nr
Match: TYK10353.1 (Serine-rich protein-related [Cucumis melo var. makuwa])

HSP 1 Score: 150.6 bits (379), Expect = 7.6e-33
Identity = 78/94 (82.98%), Postives = 83/94 (88.30%), Query Frame = 0


Query: 1  MASKSGSSTHKFPTNGASRKCLCSPTTHPGSFRCSFHRNRHKISSSRSSSSSLSLITTAD 60
          MASKSGSSTHKFP+   SRKCLCSPTTHPGSFRCSFHR RHKISS+RSSSS       A+
Sbjct: 1  MASKSGSSTHKFPSTAGSRKCLCSPTTHPGSFRCSFHRTRHKISSTRSSSS-------AE 60

Query: 61 LELAKANALRSFLLQMIKPSSNDLQRRRNFHPRP 95
          LELAKANALR+FLLQMIKPSSND+QRRRNFHPRP
Sbjct: 61 LELAKANALRAFLLQMIKPSSNDVQRRRNFHPRP 87

[Close]

BLAST of CsaV3_1G028380 vs. NCBI nr
Match: XP_023515429.1 (uncharacterized protein LOC111779591 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 132.9 bits (333), Expect = 1.6e-27
Identity = 74/99 (74.75%), Postives = 82/99 (82.83%), Query Frame = 0


Query: 1  MASKSGSSTHKFPTNGASRKCLCSPTTHPGSFRCSFHRNRHKISSSRSSSSSLSLITTAD 60
          MASKSGSS  K  + G SRKCLCSPTTHPGSFRCS HRNR K+ S+RSSSSS++ ITTA 
Sbjct: 1  MASKSGSSNPKLQSIGGSRKCLCSPTTHPGSFRCSIHRNRRKV-SARSSSSSIAAITTAQ 60

Query: 61 LE---LAKANALRSFLLQMIKPSSNDLQRRRNFHPRPSR 97
          L+   LAKANALRSFLLQ+I PSS DLQRRRNF P+PSR
Sbjct: 61 LKLTMLAKANALRSFLLQIINPSSKDLQRRRNFRPKPSR 98

[Close]

BLAST of CsaV3_1G028380 vs. NCBI nr
Match: XP_022927032.1 (uncharacterized protein LOC111433980 [Cucurbita moschata] >KAG7021749.1 hypothetical protein SDJN02_15476, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 131.3 bits (329), Expect = 4.7e-27
Identity = 72/99 (72.73%), Postives = 84/99 (84.85%), Query Frame = 0


Query: 1  MASKSGSSTHKFPTNGASRKCLCSPTTHPGSFRCSFHRNRHKISSSRSSSSSLSLITTAD 60
          MA+KS S   K  + G+SRKCLCSPTTHPGSFRCSFHRNR K +S+RSSSSS++ IT+A 
Sbjct: 1  MATKSRSVNSKLQSVGSSRKCLCSPTTHPGSFRCSFHRNRRK-ASARSSSSSITAITSAQ 60

Query: 61 LEL---AKANALRSFLLQMIKPSSNDLQRRRNFHPRPSR 97
          LEL   AKANA+R+FLL +I+PSSNDLQRRRNFHPRPSR
Sbjct: 61 LELTVFAKANAVRAFLLHIIRPSSNDLQRRRNFHPRPSR 98

[Close]

BLAST of CsaV3_1G028380 vs. ExPASy TrEMBL
Match: A0A0A0LYY6 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G264520 PE=4 SV=1)

HSP 1 Score: 186.4 bits (472), Expect = 6.0e-44
Identity = 96/96 (100.00%), Postives = 96/96 (100.00%), Query Frame = 0


Query: 1  MASKSGSSTHKFPTNGASRKCLCSPTTHPGSFRCSFHRNRHKISSSRSSSSSLSLITTAD 60
          MASKSGSSTHKFPTNGASRKCLCSPTTHPGSFRCSFHRNRHKISSSRSSSSSLSLITTAD
Sbjct: 1  MASKSGSSTHKFPTNGASRKCLCSPTTHPGSFRCSFHRNRHKISSSRSSSSSLSLITTAD 60

Query: 61 LELAKANALRSFLLQMIKPSSNDLQRRRNFHPRPSR 97
          LELAKANALRSFLLQMIKPSSNDLQRRRNFHPRPSR
Sbjct: 61 LELAKANALRSFLLQMIKPSSNDLQRRRNFHPRPSR 96

[Close]

BLAST of CsaV3_1G028380 vs. ExPASy TrEMBL
Match: A0A5A7U6S1 (Serine-rich protein-related OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold25870G00010 PE=4 SV=1)

HSP 1 Score: 154.1 bits (388), Expect = 3.3e-34
Identity = 80/96 (83.33%), Postives = 85/96 (88.54%), Query Frame = 0


Query: 1  MASKSGSSTHKFPTNGASRKCLCSPTTHPGSFRCSFHRNRHKISSSRSSSSSLSLITTAD 60
          MASKSGSSTHKFP+   SRKCLCSPTTHPGSFRCSFHR RHKISS+RSSSS       A+
Sbjct: 1  MASKSGSSTHKFPSTAGSRKCLCSPTTHPGSFRCSFHRTRHKISSTRSSSS-------AE 60

Query: 61 LELAKANALRSFLLQMIKPSSNDLQRRRNFHPRPSR 97
          LELAKANALR+FLLQMIKPSSND+QRRRNFHPRPSR
Sbjct: 61 LELAKANALRAFLLQMIKPSSNDVQRRRNFHPRPSR 89

[Close]

BLAST of CsaV3_1G028380 vs. ExPASy TrEMBL
Match: A0A1S3B8Q0 (uncharacterized protein LOC103487396 OS=Cucumis melo OX=3656 GN=LOC103487396 PE=4 SV=1)

HSP 1 Score: 154.1 bits (388), Expect = 3.3e-34
Identity = 80/96 (83.33%), Postives = 85/96 (88.54%), Query Frame = 0


Query: 1  MASKSGSSTHKFPTNGASRKCLCSPTTHPGSFRCSFHRNRHKISSSRSSSSSLSLITTAD 60
          MASKSGSSTHKFP+   SRKCLCSPTTHPGSFRCSFHR RHKISS+RSSSS       A+
Sbjct: 1  MASKSGSSTHKFPSTAGSRKCLCSPTTHPGSFRCSFHRTRHKISSTRSSSS-------AE 60

Query: 61 LELAKANALRSFLLQMIKPSSNDLQRRRNFHPRPSR 97
          LELAKANALR+FLLQMIKPSSND+QRRRNFHPRPSR
Sbjct: 61 LELAKANALRAFLLQMIKPSSNDVQRRRNFHPRPSR 89

[Close]

BLAST of CsaV3_1G028380 vs. ExPASy TrEMBL
Match: A0A5D3CER3 (Serine-rich protein-related OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold367G00300 PE=4 SV=1)

HSP 1 Score: 150.6 bits (379), Expect = 3.7e-33
Identity = 78/94 (82.98%), Postives = 83/94 (88.30%), Query Frame = 0


Query: 1  MASKSGSSTHKFPTNGASRKCLCSPTTHPGSFRCSFHRNRHKISSSRSSSSSLSLITTAD 60
          MASKSGSSTHKFP+   SRKCLCSPTTHPGSFRCSFHR RHKISS+RSSSS       A+
Sbjct: 1  MASKSGSSTHKFPSTAGSRKCLCSPTTHPGSFRCSFHRTRHKISSTRSSSS-------AE 60

Query: 61 LELAKANALRSFLLQMIKPSSNDLQRRRNFHPRP 95
          LELAKANALR+FLLQMIKPSSND+QRRRNFHPRP
Sbjct: 61 LELAKANALRAFLLQMIKPSSNDVQRRRNFHPRP 87

[Close]

BLAST of CsaV3_1G028380 vs. ExPASy TrEMBL
Match: A0A6J1EG01 (uncharacterized protein LOC111433980 OS=Cucurbita moschata OX=3662 GN=LOC111433980 PE=4 SV=1)

HSP 1 Score: 131.3 bits (329), Expect = 2.3e-27
Identity = 72/99 (72.73%), Postives = 84/99 (84.85%), Query Frame = 0


Query: 1  MASKSGSSTHKFPTNGASRKCLCSPTTHPGSFRCSFHRNRHKISSSRSSSSSLSLITTAD 60
          MA+KS S   K  + G+SRKCLCSPTTHPGSFRCSFHRNR K +S+RSSSSS++ IT+A 
Sbjct: 1  MATKSRSVNSKLQSVGSSRKCLCSPTTHPGSFRCSFHRNRRK-ASARSSSSSITAITSAQ 60

Query: 61 LEL---AKANALRSFLLQMIKPSSNDLQRRRNFHPRPSR 97
          LEL   AKANA+R+FLL +I+PSSNDLQRRRNFHPRPSR
Sbjct: 61 LELTVFAKANAVRAFLLHIIRPSSNDLQRRRNFHPRPSR 98

[Close]

BLAST of CsaV3_1G028380 vs. TAIR 10
Match: AT5G11090.1 (serine-rich protein-related )

HSP 1 Score: 61.2 bits (147), Expect = 5.6e-10
Identity = 36/89 (40.45%), Postives = 55/89 (61.80%), Query Frame = 0


Query: 18  SRKCLCSPTTHPGSFRCSFHR---NRHKISSSRSSSSSLSLITTA------DLELAKANA 77
           SR+C+CSPTTHPGSFRCS H+   N H   ++  +++ L++  +A       +   +   
Sbjct: 120 SRRCMCSPTTHPGSFRCSLHKNVANPHGQGTASYTTNGLNMRRSAMTNSLVRIGGVEGEW 179

Query: 78  LRSFLLQMIKPSSNDLQRRRNFHPRPSRL 98
           +R  L  +I+PSS+ L+RR  + PRPSRL
Sbjct: 180 VRRALTTLIRPSSHHLKRRAAYQPRPSRL 208

[Close]

BLAST of CsaV3_1G028380 vs. TAIR 10
Match: AT5G25280.1 (serine-rich protein-related )

HSP 1 Score: 60.1 bits (144), Expect = 1.3e-09
Identity = 39/106 (36.79%), Postives = 62/106 (58.49%), Query Frame = 0


Query: 1   MASKSGSSTHKFPTNGASRKCLCSPTTHPGSFRCSFHR---NRHKISSSRSSSSSLSLIT 60
           ++S   S+ HK P   + R+C+CSPTTHPGSFRCS H+   N H   ++  +++ L++  
Sbjct: 108 VSSNKPSNHHKIP--DSRRRCMCSPTTHPGSFRCSLHKNVANPHGQGTASYTTNGLNMRR 167

Query: 61  TA------DLELAKANALRSFLLQMIKPSSNDLQRRRNFHPRPSRL 98
           +A       +   +   +R  L  +I+PSS+ L+RR  + PR SRL
Sbjct: 168 SAMTNSLVRIGGVEGEWVRRALTTLIRPSSHQLKRRSAYEPRRSRL 211

[Close]

BLAST of CsaV3_1G028380 vs. TAIR 10
Match: AT5G25280.2 (serine-rich protein-related )

HSP 1 Score: 60.1 bits (144), Expect = 1.3e-09
Identity = 39/106 (36.79%), Postives = 62/106 (58.49%), Query Frame = 0


Query: 1   MASKSGSSTHKFPTNGASRKCLCSPTTHPGSFRCSFHR---NRHKISSSRSSSSSLSLIT 60
           ++S   S+ HK P   + R+C+CSPTTHPGSFRCS H+   N H   ++  +++ L++  
Sbjct: 108 VSSNKPSNHHKIP--DSRRRCMCSPTTHPGSFRCSLHKNVANPHGQGTASYTTNGLNMRR 167

Query: 61  TA------DLELAKANALRSFLLQMIKPSSNDLQRRRNFHPRPSRL 98
           +A       +   +   +R  L  +I+PSS+ L+RR  + PR SRL
Sbjct: 168 SAMTNSLVRIGGVEGEWVRRALTTLIRPSSHQLKRRSAYEPRRSRL 211

[Close]

BLAST of CsaV3_1G028380 vs. TAIR 10
Match: AT5G20370.1 (serine-rich protein-related )

HSP 1 Score: 57.4 bits (137), Expect = 8.1e-09
Identity = 45/117 (38.46%), Postives = 52/117 (44.44%), Query Frame = 0


Query: 7   SSTHKFPTNGASRKCLCSPTTHPGSFRCSFHRNRHKISSSRSSSSSLSLITTAD------ 66
           SS H+       RKCLCSPTTHPGSFRCSFHR      S   +SS++      D      
Sbjct: 62  SSNHQ-----TKRKCLCSPTTHPGSFRCSFHRRLEHEKSKTLASSTVKRNNRGDNTIRVN 121

Query: 67  -----LELAKANAL------------RSFLLQMIKPSSNDLQRRRNFHPRPSRLFRD 101
                 +LA  N+L            RS    + KPSS    RR  F PR SR   D
Sbjct: 122 VGLNLRKLALMNSLAKIGSVEAERFRRSLAANLAKPSSLHSHRRPEFRPRLSRFHED 173

[Close]

BLAST of CsaV3_1G028380 vs. TAIR 10
Match: AT3G13227.1 (serine-rich protein-related )

HSP 1 Score: 46.2 bits (108), Expect = 1.9e-05
Identity = 24/57 (42.11%), Postives = 34/57 (59.65%), Query Frame = 0


Query: 6   GSSTHKFPTNGASRKCLCSPTTHPGSFRCSFHRNRHKISSSRSSS--SSLSLITTAD 61
           G S     ++   + CLC+PTTHPGSFRC +HR    +  SR +S  S+LS++   D
Sbjct: 50  GGSVGMSKSSSVRQNCLCAPTTHPGSFRCRYHRRNAGLGMSRGTSVPSNLSMLAGGD 106

The following BLAST results are available for this feature:

BLAST of CsaV3_1G028380 vs. NCBI nr


Match Name	E-value	Identity	Description
KAE8653030.1	9.8e-49	100.00	hypothetical protein Csa_019924 [Cucumis sativus]	[more]
XP_008443918.1	6.8e-34	83.33	PREDICTED: uncharacterized protein LOC103487396 [Cucumis melo] >KAA0050057.1 Ser...	[more]
TYK10353.1	7.6e-33	82.98	Serine-rich protein-related [Cucumis melo var. makuwa]	[more]
XP_023515429.1	1.6e-27	74.75	uncharacterized protein LOC111779591 [Cucurbita pepo subsp. pepo]	[more]
XP_022927032.1	4.7e-27	72.73	uncharacterized protein LOC111433980 [Cucurbita moschata] >KAG7021749.1 hypothet...	[more]

BLAST of CsaV3_1G028380 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of CsaV3_1G028380 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0LYY6	6.0e-44	100.00	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G264520 PE=4 SV=1	[more]
A0A5A7U6S1	3.3e-34	83.33	Serine-rich protein-related OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaf...	[more]
A0A1S3B8Q0	3.3e-34	83.33	uncharacterized protein LOC103487396 OS=Cucumis melo OX=3656 GN=LOC103487396 PE=...	[more]
A0A5D3CER3	3.7e-33	82.98	Serine-rich protein-related OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaf...	[more]
A0A6J1EG01	2.3e-27	72.73	uncharacterized protein LOC111433980 OS=Cucurbita moschata OX=3662 GN=LOC1114339...	[more]

BLAST of CsaV3_1G028380 vs. TAIR 10


Match Name	E-value	Identity	Description
AT5G11090.1	5.6e-10	40.45	serine-rich protein-related	[more]
AT5G25280.1	1.3e-09	36.79	serine-rich protein-related	[more]
AT5G25280.2	1.3e-09	36.79	serine-rich protein-related	[more]
AT5G20370.1	8.1e-09	38.46	serine-rich protein-related	[more]
AT3G13227.1	1.9e-05	42.11	serine-rich protein-related	[more]

InterPro

Analysis Name: InterPro Annotations of Cucumber (Chinese Long) v3
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 81..104
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 84..104
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..20
None	No IPR available	PANTHER	PTHR33132	OSJNBB0118P14.9 PROTEIN	coord: 15..97
None	No IPR available	PANTHER	PTHR33132:SF63	SUBFAMILY NOT NAMED	coord: 15..97

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CsaV3_1G028380.1	CsaV3_1G028380.1	mRNA