CsaV3_1G026590 (gene) Cucumber (Chinese Long) v3

Overview


Name	CsaV3_1G026590
Type	gene
Organism	Cucumis sativus L. var. sativus cv. Chinese Long (Cucumber (Chinese Long) v3)
Description	Maturase
Location	chr1: 14330106 .. 14330294 (+)
RNA-Seq Expression	CsaV3_1G026590
Synteny	CsaV3_1G026590

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGAATCAAGTCTTTTCCGTCGGACGACTCGTAGGAGGTGAGAAGGGCCCTTACTACTCTGTCCCACACAGTGTACTACTATCGGCCCTAGCAGGCAAGATCTACCTACACAAGCTCGATCAGGAGATAGGGAGGATCCGACAGAAGTACTCAATTCCTCTTGTTCAGAGAATCAGATCGGTTCTATAA

mRNA sequence

ATGAATCAAGTCTTTTCCGTCGGACGACTCGTAGGAGGTGAGAAGGGCCCTTACTACTCTGTCCCACACAGTGTACTACTATCGGCCCTAGCAGGCAAGATCTACCTACACAAGCTCGATCAGGAGATAGGGAGGATCCGACAGAAGTACTCAATTCCTCTTGTTCAGAGAATCAGATCGGTTCTATAA

Coding sequence (CDS)

ATGAATCAAGTCTTTTCCGTCGGACGACTCGTAGGAGGTGAGAAGGGCCCTTACTACTCTGTCCCACACAGTGTACTACTATCGGCCCTAGCAGGCAAGATCTACCTACACAAGCTCGATCAGGAGATAGGGAGGATCCGACAGAAGTACTCAATTCCTCTTGTTCAGAGAATCAGATCGGTTCTATAA

Protein sequence

MNQVFSVGRLVGGEKGPYYSVPHSVLLSALAGKIYLHKLDQEIGRIRQKYSIPLVQRIRSVL*

Homology

[Close]

BLAST of CsaV3_1G026590 vs. NCBI nr
Match: KAE8652986.1 (hypothetical protein Csa_023505 [Cucumis sativus])

HSP 1 Score: 125.6 bits (314), Expect = 1.6e-25
Identity = 62/62 (100.00%), Postives = 62/62 (100.00%), Query Frame = 0


Query: 1  MNQVFSVGRLVGGEKGPYYSVPHSVLLSALAGKIYLHKLDQEIGRIRQKYSIPLVQRIRS 60
          MNQVFSVGRLVGGEKGPYYSVPHSVLLSALAGKIYLHKLDQEIGRIRQKYSIPLVQRIRS
Sbjct: 1  MNQVFSVGRLVGGEKGPYYSVPHSVLLSALAGKIYLHKLDQEIGRIRQKYSIPLVQRIRS 60

Query: 61 VL 63
          VL
Sbjct: 61 VL 62

[Close]

BLAST of CsaV3_1G026590 vs. NCBI nr
Match: YP_004849345.1 (maturase, partial [Cucumis sativus] >ADZ10772.1 maturase, partial [Cucumis sativus])

HSP 1 Score: 125.6 bits (314), Expect = 1.6e-25
Identity = 62/62 (100.00%), Postives = 62/62 (100.00%), Query Frame = 0


Query: 1   MNQVFSVGRLVGGEKGPYYSVPHSVLLSALAGKIYLHKLDQEIGRIRQKYSIPLVQRIRS 60
           MNQVFSVGRLVGGEKGPYYSVPHSVLLSALAGKIYLHKLDQEIGRIRQKYSIPLVQRIRS
Sbjct: 100 MNQVFSVGRLVGGEKGPYYSVPHSVLLSALAGKIYLHKLDQEIGRIRQKYSIPLVQRIRS 159

Query: 61  VL 63
           VL
Sbjct: 160 VL 161

[Close]

BLAST of CsaV3_1G026590 vs. NCBI nr
Match: AZP40293.1 (maturase [Cucumis melo var. momordica])

HSP 1 Score: 121.7 bits (304), Expect = 2.3e-24
Identity = 61/62 (98.39%), Postives = 61/62 (98.39%), Query Frame = 0


Query: 1   MNQVFSVGRLVGGEKGPYYSVPHSVLLSALAGKIYLHKLDQEIGRIRQKYSIPLVQRIRS 60
           MNQVFSVGRLVGGEKGP YSVPHSVLLSALAGKIYLHKLDQEIGRIRQKYSIPLVQRIRS
Sbjct: 100 MNQVFSVGRLVGGEKGPDYSVPHSVLLSALAGKIYLHKLDQEIGRIRQKYSIPLVQRIRS 159

Query: 61  VL 63
           VL
Sbjct: 160 VL 161

[Close]

BLAST of CsaV3_1G026590 vs. NCBI nr
Match: AEN56096.1 (maturase, partial [Cucumis melo subsp. melo])

HSP 1 Score: 121.7 bits (304), Expect = 2.3e-24
Identity = 61/62 (98.39%), Postives = 61/62 (98.39%), Query Frame = 0


Query: 1   MNQVFSVGRLVGGEKGPYYSVPHSVLLSALAGKIYLHKLDQEIGRIRQKYSIPLVQRIRS 60
           MNQVFSVGRLVGGEKGP YSVPHSVLLSALAGKIYLHKLDQEIGRIRQKYSIPLVQRIRS
Sbjct: 100 MNQVFSVGRLVGGEKGPDYSVPHSVLLSALAGKIYLHKLDQEIGRIRQKYSIPLVQRIRS 159

Query: 61  VL 63
           VL
Sbjct: 160 VL 161

[Close]

BLAST of CsaV3_1G026590 vs. NCBI nr
Match: KAA0046435.1 (maturase [Cucumis melo var. makuwa] >TYK26899.1 maturase [Cucumis melo var. makuwa])

HSP 1 Score: 121.7 bits (304), Expect = 2.3e-24
Identity = 61/62 (98.39%), Postives = 61/62 (98.39%), Query Frame = 0


Query: 1   MNQVFSVGRLVGGEKGPYYSVPHSVLLSALAGKIYLHKLDQEIGRIRQKYSIPLVQRIRS 60
           MNQVFSVGRLVGGEKGP YSVPHSVLLSALAGKIYLHKLDQEIGRIRQKYSIPLVQRIRS
Sbjct: 74  MNQVFSVGRLVGGEKGPDYSVPHSVLLSALAGKIYLHKLDQEIGRIRQKYSIPLVQRIRS 133

Query: 61  VL 63
           VL
Sbjct: 134 VL 135

[Close]

BLAST of CsaV3_1G026590 vs. ExPASy TrEMBL
Match: G3EIZ7 (Maturase (Fragment) OS=Cucumis sativus OX=3659 GN=matR PE=4 SV=1)

HSP 1 Score: 125.6 bits (314), Expect = 7.6e-26
Identity = 62/62 (100.00%), Postives = 62/62 (100.00%), Query Frame = 0


Query: 1   MNQVFSVGRLVGGEKGPYYSVPHSVLLSALAGKIYLHKLDQEIGRIRQKYSIPLVQRIRS 60
           MNQVFSVGRLVGGEKGPYYSVPHSVLLSALAGKIYLHKLDQEIGRIRQKYSIPLVQRIRS
Sbjct: 100 MNQVFSVGRLVGGEKGPYYSVPHSVLLSALAGKIYLHKLDQEIGRIRQKYSIPLVQRIRS 159

Query: 61  VL 63
           VL
Sbjct: 160 VL 161

[Close]

BLAST of CsaV3_1G026590 vs. ExPASy TrEMBL
Match: A0A5A7TYH9 (Maturase (Mitochondrion) OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold83073G00010 PE=4 SV=1)

HSP 1 Score: 121.7 bits (304), Expect = 1.1e-24
Identity = 61/62 (98.39%), Postives = 61/62 (98.39%), Query Frame = 0


Query: 1   MNQVFSVGRLVGGEKGPYYSVPHSVLLSALAGKIYLHKLDQEIGRIRQKYSIPLVQRIRS 60
           MNQVFSVGRLVGGEKGP YSVPHSVLLSALAGKIYLHKLDQEIGRIRQKYSIPLVQRIRS
Sbjct: 74  MNQVFSVGRLVGGEKGPDYSVPHSVLLSALAGKIYLHKLDQEIGRIRQKYSIPLVQRIRS 133

Query: 61  VL 63
           VL
Sbjct: 134 VL 135

[Close]

BLAST of CsaV3_1G026590 vs. ExPASy TrEMBL
Match: G3EU13 (Maturase (Fragment) OS=Cucumis melo subsp. melo OX=412675 GN=matR PE=4 SV=1)

HSP 1 Score: 121.7 bits (304), Expect = 1.1e-24
Identity = 61/62 (98.39%), Postives = 61/62 (98.39%), Query Frame = 0


Query: 1   MNQVFSVGRLVGGEKGPYYSVPHSVLLSALAGKIYLHKLDQEIGRIRQKYSIPLVQRIRS 60
           MNQVFSVGRLVGGEKGP YSVPHSVLLSALAGKIYLHKLDQEIGRIRQKYSIPLVQRIRS
Sbjct: 100 MNQVFSVGRLVGGEKGPDYSVPHSVLLSALAGKIYLHKLDQEIGRIRQKYSIPLVQRIRS 159

Query: 61  VL 63
           VL
Sbjct: 160 VL 161

[Close]

BLAST of CsaV3_1G026590 vs. ExPASy TrEMBL
Match: A0A3S9JIE7 (Maturase OS=Cucumis melo var. momordica OX=2034244 GN=matR PE=4 SV=1)

HSP 1 Score: 121.7 bits (304), Expect = 1.1e-24
Identity = 61/62 (98.39%), Postives = 61/62 (98.39%), Query Frame = 0


Query: 1   MNQVFSVGRLVGGEKGPYYSVPHSVLLSALAGKIYLHKLDQEIGRIRQKYSIPLVQRIRS 60
           MNQVFSVGRLVGGEKGP YSVPHSVLLSALAGKIYLHKLDQEIGRIRQKYSIPLVQRIRS
Sbjct: 100 MNQVFSVGRLVGGEKGPDYSVPHSVLLSALAGKIYLHKLDQEIGRIRQKYSIPLVQRIRS 159

Query: 61  VL 63
           VL
Sbjct: 160 VL 161

[Close]

BLAST of CsaV3_1G026590 vs. ExPASy TrEMBL
Match: E2IU31 (Maturase (Fragment) OS=Corynocarpus laevigatus OX=4312 GN=matR PE=4 SV=1)

HSP 1 Score: 114.0 bits (284), Expect = 2.3e-22
Identity = 55/62 (88.71%), Postives = 58/62 (93.55%), Query Frame = 0


Query: 1  MNQVFSVGRLVGGEKGPYYSVPHSVLLSALAGKIYLHKLDQEIGRIRQKYSIPLVQRIRS 60
          + +VFSVGRLVGGEKGPYYSVPHSVLLSAL G IYLHKLDQEIGRIRQKY IP+VQRIRS
Sbjct: 7  IQKVFSVGRLVGGEKGPYYSVPHSVLLSALPGNIYLHKLDQEIGRIRQKYEIPIVQRIRS 66

Query: 61 VL 63
          VL
Sbjct: 67 VL 68

[Close]

BLAST of CsaV3_1G026590 vs. TAIR 10
Match: ATMG00520.1 (Intron maturase, type II family protein )

HSP 1 Score: 100.5 bits (249), Expect = 5.0e-22
Identity = 50/62 (80.65%), Postives = 55/62 (88.71%), Query Frame = 0


Query: 1   MNQVFSVGRLVGGEKGPYYSVPHSVLLSALAGKIYLHKLDQEIGRIRQKYSIPLVQRIRS 60
           + +VFS GRLVG E+GP YSVPHSVLLSAL G IYLHKLDQEIGRIRQKY IP+VQR+RS
Sbjct: 96  IQKVFSAGRLVGVERGP-YSVPHSVLLSALPGNIYLHKLDQEIGRIRQKYEIPIVQRVRS 155

Query: 61  VL 63
           VL
Sbjct: 156 VL 156

The following BLAST results are available for this feature:

BLAST of CsaV3_1G026590 vs. NCBI nr


Match Name	E-value	Identity	Description
KAE8652986.1	1.6e-25	100.00	hypothetical protein Csa_023505 [Cucumis sativus]	[more]
YP_004849345.1	1.6e-25	100.00	maturase, partial [Cucumis sativus] >ADZ10772.1 maturase, partial [Cucumis sativ...	[more]
AZP40293.1	2.3e-24	98.39	maturase [Cucumis melo var. momordica]	[more]
AEN56096.1	2.3e-24	98.39	maturase, partial [Cucumis melo subsp. melo]	[more]
KAA0046435.1	2.3e-24	98.39	maturase [Cucumis melo var. makuwa] >TYK26899.1 maturase [Cucumis melo var. maku...	[more]

BLAST of CsaV3_1G026590 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of CsaV3_1G026590 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
G3EIZ7	7.6e-26	100.00	Maturase (Fragment) OS=Cucumis sativus OX=3659 GN=matR PE=4 SV=1	[more]
A0A5A7TYH9	1.1e-24	98.39	Maturase (Mitochondrion) OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffol...	[more]
G3EU13	1.1e-24	98.39	Maturase (Fragment) OS=Cucumis melo subsp. melo OX=412675 GN=matR PE=4 SV=1	[more]
A0A3S9JIE7	1.1e-24	98.39	Maturase OS=Cucumis melo var. momordica OX=2034244 GN=matR PE=4 SV=1	[more]
E2IU31	2.3e-22	88.71	Maturase (Fragment) OS=Corynocarpus laevigatus OX=4312 GN=matR PE=4 SV=1	[more]

BLAST of CsaV3_1G026590 vs. TAIR 10


Match Name	E-value	Identity	Description
ATMG00520.1	5.0e-22	80.65	Intron maturase, type II family protein	[more]

InterPro

Analysis Name: InterPro Annotations of Cucumber (Chinese Long) v3
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR33642:SF6	REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN-RELATED	coord: 2..56
None	No IPR available	PANTHER	PTHR33642	COX1/OXI3 INTRON 1 PROTEIN-RELATED	coord: 2..56

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CsaV3_1G026590.1	CsaV3_1G026590.1	mRNA