CsaV3_1G025470 (gene) Cucumber (Chinese Long) v3

Overview
NameCsaV3_1G025470
Typegene
OrganismCucumis sativus L. var. sativus cv. Chinese Long (Cucumber (Chinese Long) v3)
DescriptionPhotosystem I assembly protein ycf3
Locationchr1: 14136613 .. 14137990 (-)
RNA-Seq ExpressionCsaV3_1G025470
SyntenyCsaV3_1G025470
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGATCGAAGTTATATACTCTATAACATAGGTCTTATCCACACAAGGAACGGAGAACATACGAAAGCTTTGGAATATTATTTTCGGGCACTAGAACGAAACCCGTTCTTACCACAAGCTTTTAATAATATGGCTGTGATCTGTCATTACGTGCGACTATCTCCACTATAGAAAGAAAAAAAAGAGAAAATTCGCTAATAAATACTAAAAAAAAAATAGGCTTTCTACATATGTATTGTCCAAACTAACGATTTGTATCAGCTGTAGCAAAGAAAGAAACTTCATAGAAATAGAAATATGAAGAAATAGGTATGCCTAGATACTTTATTCTATGGATAAAGGATCTAATTGATAGAAGAAGCACCGTAAAGATCAATTAGTCAGGTTTTTGGCCGATACAATAAAAACTGCTTACTTATATCATGATATAAGATCAAAATGAAGGAATCCACTTATGTAATAGGGTGGATCCCCTACAATATTGAGCAGCGGTGTAGCATCAGATCCCAAAGACAGTAAGTCTTTTCTTTCTTATGAAGGAAAGTCTTTTTCAAGGATTCTATATAAATTTCTAGATGAAACCGAGATAGTTATCTTTCAGAAAATTGTAACGATAGTGGGTGGAATGCCTATGCTTTATTTTTCTGAAGGTGGGAGAAAAGATAAAACTTATTTAATTATTCAGCAAAATTGAAGTTTGAAACTTATATAATTAACCTCTTTTGCTTAACTCGAGAAAAAAAAATGGCCTAGATCTATGAAAAATTTCATTCAATTAGATTAGATATGGTAAATTTTTTAAAATATGGGACAGCAAAAGAATTGACTGTTGAGCCGTATGAGGTAGGAAACTCTCAAGTACGGTTCTAAGGGAAGGAATTTACCTGCCTATTCCGACCGGGGAGAACAGGCCATTCGACAGGGAGATTCTGAAATTGCGGAGGCTTGGTTCAATCAAGCCGCTGAGTATTGGAAACAAGCTATAGCGCTTACTCCCGGTAATTATATTGAAGCCCAAAATTGGTTGAAGATCACAAGGCGTTTCAAATAAGAAAACTCTATTTTTTTTTTTTCTTTATTTTAATTATTAACTGCTATGCTATTATTAAACTTTTCTTTTGATAAATATTTTCAAATATGAATGAATTTTTTATATTTTGTATAAATATATAGCTATTATATTTAGCTAGTATTAGTTAGAAATTTGGATATTTTGATATTTGTTATAATTGTTTGTTGTCCGCATCAGTCAAATCAAATAAAAGGGATAATTTATCAGTGAAGAACCAATCAAGGAATTTCATTATATCCCTTCTAATCTAAGATCGTTCAATTTTTTTTGGTATTTTGTAGGGGTAAACGATACAGAGATACATTAG

mRNA sequence

ATGATCGAAGAAACTCTCAAGTACGGTTCTAAGGGAAGGAATTTACCTGCCTATTCCGACCGGGGAGAACAGGCCATTCGACAGGGAGATTCTGAAATTGCGGAGGCTTGGTTCAATCAAGCCGCTGAGTATTGGAAACAAGCTATAGCGCTTACTCCCGGGGTAAACGATACAGAGATACATTAG

Coding sequence (CDS)

ATGATCGAAGAAACTCTCAAGTACGGTTCTAAGGGAAGGAATTTACCTGCCTATTCCGACCGGGGAGAACAGGCCATTCGACAGGGAGATTCTGAAATTGCGGAGGCTTGGTTCAATCAAGCCGCTGAGTATTGGAAACAAGCTATAGCGCTTACTCCCGGGGTAAACGATACAGAGATACATTAG

Protein sequence

MIEETLKYGSKGRNLPAYSDRGEQAIRQGDSEIAEAWFNQAAEYWKQAIALTPGVNDTEIH*
Homology
[Close]
BLAST of CsaV3_1G025470 vs. NCBI nr
Match: KAE8652973.1 (hypothetical protein Csa_021105 [Cucumis sativus])

HSP 1 Score: 129.8 bits (325), Expect = 8.1e-27
Identity = 61/61 (100.00%), Postives = 61/61 (100.00%), Query Frame = 0 

Query: 1  MIEETLKYGSKGRNLPAYSDRGEQAIRQGDSEIAEAWFNQAAEYWKQAIALTPGVNDTEI 60
          MIEETLKYGSKGRNLPAYSDRGEQAIRQGDSEIAEAWFNQAAEYWKQAIALTPGVNDTEI
Sbjct: 1  MIEETLKYGSKGRNLPAYSDRGEQAIRQGDSEIAEAWFNQAAEYWKQAIALTPGVNDTEI 60

Query: 61 H 62
          H
Sbjct: 61 H 61

[Close]
BLAST of CsaV3_1G025470 vs. NCBI nr
Match: TKS04885.1 (ribosomal protein S4 [Populus alba])

HSP 1 Score: 105.1 bits (261), Expect = 2.1e-19
Identity = 49/54 (90.74%), Postives = 53/54 (98.15%), Query Frame = 0 

Query: 1   MIEETLKYGSKGRNLPAYSDRGEQAIRQGDSEIAEAWFNQAAEYWKQAIALTPG 55
           +++ETLKYGSKGRNL AYSDRGEQAIRQGDSEIAEAWF+QAAEYWKQAIALTPG
Sbjct: 221 VLQETLKYGSKGRNLLAYSDRGEQAIRQGDSEIAEAWFDQAAEYWKQAIALTPG 274

[Close]
BLAST of CsaV3_1G025470 vs. NCBI nr
Match: KAG6735386.1 (hypothetical protein POTOM_062012 [Populus tomentosa])

HSP 1 Score: 105.1 bits (261), Expect = 2.1e-19
Identity = 49/54 (90.74%), Postives = 53/54 (98.15%), Query Frame = 0 

Query: 1   MIEETLKYGSKGRNLPAYSDRGEQAIRQGDSEIAEAWFNQAAEYWKQAIALTPG 55
           +++ETLKYGSKGRNL AYSDRGEQAIRQGDSEIAEAWF+QAAEYWKQAIALTPG
Sbjct: 65  VLQETLKYGSKGRNLLAYSDRGEQAIRQGDSEIAEAWFDQAAEYWKQAIALTPG 118

[Close]
BLAST of CsaV3_1G025470 vs. NCBI nr
Match: ERN02875.1 (hypothetical protein AMTR_s00334p00015220 [Amborella trichopoda] >KAF4397632.1 hypothetical protein G4B88_027372 [Cannabis sativa])

HSP 1 Score: 104.0 bits (258), Expect = 4.8e-19
Identity = 49/54 (90.74%), Postives = 51/54 (94.44%), Query Frame = 0 

Query: 1  MIEETLKYGSKGRNLPAYSDRGEQAIRQGDSEIAEAWFNQAAEYWKQAIALTPG 55
          M  ETLKYGSKGRNL AYSDRGEQAIRQGDSEIAEAWF+QAAEYWKQA+ALTPG
Sbjct: 1  MRSETLKYGSKGRNLSAYSDRGEQAIRQGDSEIAEAWFDQAAEYWKQALALTPG 54

[Close]
BLAST of CsaV3_1G025470 vs. NCBI nr
Match: RYR79265.1 (hypothetical protein Ahy_A01g004097 [Arachis hypogaea])

HSP 1 Score: 103.6 bits (257), Expect = 6.3e-19
Identity = 49/55 (89.09%), Postives = 52/55 (94.55%), Query Frame = 0 

Query: 1  MIEETLKYGSKGRNLPAYSDRGEQAIRQGDSEIAEAWFNQAAEYWKQAIALTPGV 56
          M +ETLKYGSKGRNL  YSDRGEQAIRQGDSEIAEAWF+QAAEYWKQAIALTPG+
Sbjct: 1  MRQETLKYGSKGRNLLTYSDRGEQAIRQGDSEIAEAWFDQAAEYWKQAIALTPGL 55

[Close]
BLAST of CsaV3_1G025470 vs. ExPASy Swiss-Prot
Match: Q4VZH4 (Photosystem I assembly protein Ycf3 OS=Cucumis sativus OX=3659 GN=ycf3 PE=3 SV=1)

HSP 1 Score: 73.9 bits (180), Expect = 7.0e-13
Identity = 34/34 (100.00%), Postives = 34/34 (100.00%), Query Frame = 0 

Query: 21  RGEQAIRQGDSEIAEAWFNQAAEYWKQAIALTPG 55
           RGEQAIRQGDSEIAEAWFNQAAEYWKQAIALTPG
Sbjct: 120 RGEQAIRQGDSEIAEAWFNQAAEYWKQAIALTPG 153

[Close]
BLAST of CsaV3_1G025470 vs. ExPASy Swiss-Prot
Match: Q09MH7 (Photosystem I assembly protein Ycf3 OS=Citrus sinensis OX=2711 GN=ycf3 PE=3 SV=1)

HSP 1 Score: 73.6 bits (179), Expect = 9.1e-13
Identity = 33/34 (97.06%), Postives = 34/34 (100.00%), Query Frame = 0 

Query: 21  RGEQAIRQGDSEIAEAWFNQAAEYWKQAIALTPG 55
           RGEQA+RQGDSEIAEAWFNQAAEYWKQAIALTPG
Sbjct: 119 RGEQAVRQGDSEIAEAWFNQAAEYWKQAIALTPG 152

[Close]
BLAST of CsaV3_1G025470 vs. ExPASy Swiss-Prot
Match: A8SEA4 (Photosystem I assembly protein Ycf3 OS=Ceratophyllum demersum OX=4428 GN=ycf3 PE=3 SV=1)

HSP 1 Score: 73.2 bits (178), Expect = 1.2e-12
Identity = 36/41 (87.80%), Postives = 37/41 (90.24%), Query Frame = 0 

Query: 21  RGEQAIRQGDSEIAEAWFNQAAEYWKQAIALTPGVNDTEIH 62
           RGEQAIRQGDSEIAEAWF+QAAEYWKQAIALTPG N  E H
Sbjct: 119 RGEQAIRQGDSEIAEAWFDQAAEYWKQAIALTPG-NYIEAH 158

[Close]
BLAST of CsaV3_1G025470 vs. ExPASy Swiss-Prot
Match: Q0G9W1 (Photosystem I assembly protein Ycf3 OS=Daucus carota OX=4039 GN=ycf3 PE=3 SV=1)

HSP 1 Score: 73.2 bits (178), Expect = 1.2e-12
Identity = 36/41 (87.80%), Postives = 37/41 (90.24%), Query Frame = 0 

Query: 21  RGEQAIRQGDSEIAEAWFNQAAEYWKQAIALTPGVNDTEIH 62
           RGEQAIRQGDSEIAEAWF+QAAEYWKQAIALTPG N  E H
Sbjct: 119 RGEQAIRQGDSEIAEAWFDQAAEYWKQAIALTPG-NYIEAH 158

[Close]
BLAST of CsaV3_1G025470 vs. ExPASy Swiss-Prot
Match: Q1KXV8 (Photosystem I assembly protein Ycf3 OS=Helianthus annuus OX=4232 GN=ycf3 PE=3 SV=1)

HSP 1 Score: 73.2 bits (178), Expect = 1.2e-12
Identity = 36/41 (87.80%), Postives = 37/41 (90.24%), Query Frame = 0 

Query: 21  RGEQAIRQGDSEIAEAWFNQAAEYWKQAIALTPGVNDTEIH 62
           RGEQAIRQGDSEIAEAWF+QAAEYWKQAIALTPG N  E H
Sbjct: 119 RGEQAIRQGDSEIAEAWFDQAAEYWKQAIALTPG-NYIEAH 158

[Close]
BLAST of CsaV3_1G025470 vs. ExPASy TrEMBL
Match: A0A4U5Q996 (30S ribosomal protein S4, chloroplastic OS=Populus alba OX=43335 GN=rps4 PE=3 SV=1)

HSP 1 Score: 105.1 bits (261), Expect = 1.0e-19
Identity = 49/54 (90.74%), Postives = 53/54 (98.15%), Query Frame = 0 

Query: 1   MIEETLKYGSKGRNLPAYSDRGEQAIRQGDSEIAEAWFNQAAEYWKQAIALTPG 55
           +++ETLKYGSKGRNL AYSDRGEQAIRQGDSEIAEAWF+QAAEYWKQAIALTPG
Sbjct: 221 VLQETLKYGSKGRNLLAYSDRGEQAIRQGDSEIAEAWFDQAAEYWKQAIALTPG 274

[Close]
BLAST of CsaV3_1G025470 vs. ExPASy TrEMBL
Match: W1P7C5 (Uncharacterized protein OS=Amborella trichopoda OX=13333 GN=AMTR_s00334p00015220 PE=4 SV=1)

HSP 1 Score: 104.0 bits (258), Expect = 2.3e-19
Identity = 49/54 (90.74%), Postives = 51/54 (94.44%), Query Frame = 0 

Query: 1  MIEETLKYGSKGRNLPAYSDRGEQAIRQGDSEIAEAWFNQAAEYWKQAIALTPG 55
          M  ETLKYGSKGRNL AYSDRGEQAIRQGDSEIAEAWF+QAAEYWKQA+ALTPG
Sbjct: 1  MRSETLKYGSKGRNLSAYSDRGEQAIRQGDSEIAEAWFDQAAEYWKQALALTPG 54

[Close]
BLAST of CsaV3_1G025470 vs. ExPASy TrEMBL
Match: A0A7J6HQR9 (Uncharacterized protein OS=Cannabis sativa OX=3483 GN=G4B88_027372 PE=4 SV=1)

HSP 1 Score: 104.0 bits (258), Expect = 2.3e-19
Identity = 49/54 (90.74%), Postives = 51/54 (94.44%), Query Frame = 0 

Query: 1  MIEETLKYGSKGRNLPAYSDRGEQAIRQGDSEIAEAWFNQAAEYWKQAIALTPG 55
          M  ETLKYGSKGRNL AYSDRGEQAIRQGDSEIAEAWF+QAAEYWKQA+ALTPG
Sbjct: 1  MRSETLKYGSKGRNLSAYSDRGEQAIRQGDSEIAEAWFDQAAEYWKQALALTPG 54

[Close]
BLAST of CsaV3_1G025470 vs. ExPASy TrEMBL
Match: A0A445EUW8 (Photosystem I P700 chlorophyll a apoprotein A1 OS=Arachis hypogaea OX=3818 GN=Ahy_A01g004097 PE=3 SV=1)

HSP 1 Score: 103.6 bits (257), Expect = 3.0e-19
Identity = 49/55 (89.09%), Postives = 52/55 (94.55%), Query Frame = 0 

Query: 1  MIEETLKYGSKGRNLPAYSDRGEQAIRQGDSEIAEAWFNQAAEYWKQAIALTPGV 56
          M +ETLKYGSKGRNL  YSDRGEQAIRQGDSEIAEAWF+QAAEYWKQAIALTPG+
Sbjct: 1  MRQETLKYGSKGRNLLTYSDRGEQAIRQGDSEIAEAWFDQAAEYWKQAIALTPGL 55

[Close]
BLAST of CsaV3_1G025470 vs. ExPASy TrEMBL
Match: A0A445C631 (Uncharacterized protein OS=Arachis hypogaea OX=3818 GN=Ahy_A07g032141 PE=4 SV=1)

HSP 1 Score: 103.2 bits (256), Expect = 4.0e-19
Identity = 49/54 (90.74%), Postives = 51/54 (94.44%), Query Frame = 0 

Query: 1  MIEETLKYGSKGRNLPAYSDRGEQAIRQGDSEIAEAWFNQAAEYWKQAIALTPG 55
          M +ETLKYGSKGRNL  YSDRGEQAIRQGDSEIAEAWF+QAAEYWKQAIALTPG
Sbjct: 1  MRQETLKYGSKGRNLLTYSDRGEQAIRQGDSEIAEAWFDQAAEYWKQAIALTPG 54

[Close]
BLAST of CsaV3_1G025470 vs. TAIR 10
Match: ATCG00360.1 (Tetratricopeptide repeat (TPR)-like superfamily protein )

HSP 1 Score: 66.6 bits (161), Expect = 7.9e-12
Identity = 30/34 (88.24%), Postives = 32/34 (94.12%), Query Frame = 0 

Query: 21  RGEQAIRQGDSEIAEAWFNQAAEYWKQAIALTPG 55
           RGEQAI+QGDSE+AEAWF QAAEYWKQAI LTPG
Sbjct: 77  RGEQAIQQGDSEMAEAWFAQAAEYWKQAITLTPG 110

The following BLAST results are available for this feature:
BLAST of CsaV3_1G025470 vs. NCBI nr
Match NameE-valueIdentityDescription
KAE8652973.18.1e-27100.00hypothetical protein Csa_021105 [Cucumis sativus][more]
TKS04885.12.1e-1990.74ribosomal protein S4 [Populus alba][more]
KAG6735386.12.1e-1990.74hypothetical protein POTOM_062012 [Populus tomentosa][more]
ERN02875.14.8e-1990.74hypothetical protein AMTR_s00334p00015220 [Amborella trichopoda] >KAF4397632.1 h... [more]
RYR79265.16.3e-1989.09hypothetical protein Ahy_A01g004097 [Arachis hypogaea][more]
BLAST of CsaV3_1G025470 vs. ExPASy Swiss-Prot
Match NameE-valueIdentityDescription
Q4VZH47.0e-13100.00Photosystem I assembly protein Ycf3 OS=Cucumis sativus OX=3659 GN=ycf3 PE=3 SV=1[more]
Q09MH79.1e-1397.06Photosystem I assembly protein Ycf3 OS=Citrus sinensis OX=2711 GN=ycf3 PE=3 SV=1[more]
A8SEA41.2e-1287.80Photosystem I assembly protein Ycf3 OS=Ceratophyllum demersum OX=4428 GN=ycf3 PE... [more]
Q0G9W11.2e-1287.80Photosystem I assembly protein Ycf3 OS=Daucus carota OX=4039 GN=ycf3 PE=3 SV=1[more]
Q1KXV81.2e-1287.80Photosystem I assembly protein Ycf3 OS=Helianthus annuus OX=4232 GN=ycf3 PE=3 SV... [more]
BLAST of CsaV3_1G025470 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A4U5Q9961.0e-1990.7430S ribosomal protein S4, chloroplastic OS=Populus alba OX=43335 GN=rps4 PE=3 SV... [more]
W1P7C52.3e-1990.74Uncharacterized protein OS=Amborella trichopoda OX=13333 GN=AMTR_s00334p00015220... [more]
A0A7J6HQR92.3e-1990.74Uncharacterized protein OS=Cannabis sativa OX=3483 GN=G4B88_027372 PE=4 SV=1[more]
A0A445EUW83.0e-1989.09Photosystem I P700 chlorophyll a apoprotein A1 OS=Arachis hypogaea OX=3818 GN=Ah... [more]
A0A445C6314.0e-1990.74Uncharacterized protein OS=Arachis hypogaea OX=3818 GN=Ahy_A07g032141 PE=4 SV=1[more]
BLAST of CsaV3_1G025470 vs. TAIR 10
Match NameE-valueIdentityDescription
ATCG00360.17.9e-1288.24Tetratricopeptide repeat (TPR)-like superfamily protein [more]
InterPro
Analysis Name: InterPro Annotations of Cucumber (Chinese Long) v3
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableCOILSCoilCoilcoord: 58..61
NoneNo IPR availablePANTHERPTHR26312:SF178PHOTOSYSTEM I ASSEMBLY PROTEIN YCF3coord: 27..56
NoneNo IPR availablePANTHERPTHR26312TETRATRICOPEPTIDE REPEAT PROTEIN 5coord: 27..56

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CsaV3_1G025470.1CsaV3_1G025470.1mRNA