CsaV3_1G018470 (gene) Cucumber (Chinese Long) v3

Overview
NameCsaV3_1G018470
Typegene
OrganismCucumis sativus L. var. sativus cv. Chinese Long (Cucumber (Chinese Long) v3)
DescriptionDUF4050 domain-containing protein
Locationchr1: 12097607 .. 12100250 (-)
RNA-Seq ExpressionCsaV3_1G018470
SyntenyCsaV3_1G018470
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATTTTCTGCCCCACGATTTTATTTGGTGCGGGTAGTTCTGCCAACTTAACTTCAACAACATGGGTAAAGGAAAAAACTATGGGGTTTCAACCACGAAGCGTGTCCACGCAAAAGGCAGAAGTTGTGCCCACGTTTTTCTTAAGATCTACCAACATTTCTCTATGCGTTGATAAAGGCCAAAATTCTTGTAGCGCCGATCTTCTCCAAAGAGGTAGTTCATGGGTTGCTATTAGCCAATTAGTAAAAGAAAAGCTTAAATTTAATTCTAATAGTAAATTTATGTTTATATTTAAGACGTAGTGCATGTTTTAATTTCTGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTGTTAATCTTATGCAAGTTCTGTGTATATTTAGTATTTTCGGTCTGATGGAGTGGAATATGTATTCTTGGAGTCGAGGATCACTTCCTTCACATTTTGAATTTTCTAGGATTAATTCAAAGAGCGATTGATTAGCTTTCAGTTTCGAACTAGAGCCGGCAGAGATTAATGGATTCGGAATTTGTTGGTGGAACAAACTTGATGAGACTAAGGAGTTGAGATGAGTCAAGCAAGAAAAAACTCTTTTATGTTTAGACAATTACTGTATCTCTCAAGACTGAGTAGAGTTGTAGAAGTTGATTATGTCATGCCATGAAATTGAGGAAGAAACAAAAGAAAATTTTATTTTCTTCTCCACTGGCTTTTAGAGTCTAAGAGATGATGACTCCACACAAGTAAGAGGGTCAAAATTATTTTTGAGAAGTTAATGAAATATCATAACTTTAATGACTGAAATATGCTTCCTTCCTGCTCTGGTTTAATCTGTGTTTGGTATGGACTTTCAATACCTTCAGTTAAGTAATAAAACACTTTCTAAATTCTGCCATGTCATCCAGCTAGACACACCTCAAAAAGCATCGTAAGAAGCACCGAAGTATTTATGGAGTAGTAAACATTTGATTAGTTTTTGAAGTCTACTAAAAAACTATGTTACCCTTTTTTTTTATGAGAAAGAAGAACCCTTGTTACCACAAACAGGATAAAGATTGAAAACATTCCCAATGCATAATGAGGGATGTAAAACGATAATCACAAAAGTACTAAGAGAATTTACAGCAAGAGATAGTAAGATAAAATAAGATGTTAAAAAAAAAGAGTTTAAATTCGCAGCCTTTACCTTAGAAATGATTTTACTTACAAACATTACTCCAAAAGTTATGCTCAATATAATTTTTGTTGCTCCCAAATTATCTTAGACTCTTGAGTGCCTTTTATTTTTACTCTCATACACACATCACCAAAATTTTCCTGAAGAGACTCTTTATCTTTATCTCGTGTACAGGTCACAGATTTTCAAGGCAATGGTTGTTCATTTTAGAGAAAATGGAAATCAATGGTAGCAATCCTCATTTGAATGGAAATGGGAATCATTCTTCAGGCGATTCAAAGGTTGCCTTAAATGGAAAGTCTAGTAAGATGCCCACATTCATCAATCACGGTAAATCTGCTTCCCTCGATCCATATATTGTCAAGATGAAGTGTTCAATATCAATATATATCGTACTCTGTGGTGATTTGTCCATCAGATTTACAAACAAAATATCCTCCTAAATGTCGTGTTGGTGCATCATAGTTTTCTTACAGCTGAGATAACTTGGCATGAAAGAAGAAGAGAATGGCGATCGTTCTGAAAATGTGCACGAGAACCAATGGAACCAATCTTAAAGTATTCATTTAAATTATTTAAATCCTTGGAGGCAGTTTGGTTTTGTCTGTGTAAAGTAAGAAAAGCATACCTATTGATTAATTTTGACTTAGCCCACTCACTTAAGTTTTTAGTTTGAGGAGTAATTGTTTCACTTAAGTTTTTAGTTTGAGGAGTAATTGTTGATATTTATTTGATGTTGATCGATGTAGGATCACAGTAACAGGAAACAACAAAAAATACAGCAGTAGTAAATAGCAGCAACAACAACACTACGTAGTGACAATAGTTTAGAGTATCGTAAAGTAACTCGTAGTTTTGAACTTTACTTCTAATGTTATTGCACACACAGTATTATTTGAGTGAAGTTCTAAACTAGCTCGTGTTTTATGATCTTGCACGTATATCCCAGTTTAATGAATACTCTAAGAATCTGTTCAGAATTCCATAGGAAGCGGCCCTTACTTTAACATTCACAAAAGTGAATCTATCAAGAGTACTCCTATAGCTAGGTACCCTACTTGATATCAAGTACAGATTTCATTAAGAACAAAAGTTCGGTCTCCTCATACGGTTTTGGATATCATGCTAATCACTGAATCATAAGAATGGAACTCCTAACTTAGCATGATTCTCATTATATTACATGTGATCAGTTATTACCCATTGAACTTGTTTATTAGGGTTTTGAGTCTTACAAGATTTGAGCATAATTTGTGATCAAACCTTGAAACGTATATAACAAGTTATTTGGCAGATCAGACGACTCAATGTTGCCGACATAGGTTGAAGACGCATTTGACGTAGACGACGATGACAAGACAATGATGTCATAAGAAAATGCTTAATTTGTAAATCTATTTTTTTATTCATATAAATTTCAATTTAAATGTAGAATTATACGAAAATGCATTTTTATTTGCATCAAAC

mRNA sequence

ATTTTCTGCCCCACGATTTTATTTGGTGCGGGTAGTTCTGCCAACTTAACTTCAACAACATGGGTAAAGGAAAAAACTATGGGGTTTCAACCACGAAGCGTGTCCACGCAAAAGGCAGAAGTTGTGCCCACGTTTTTCTTAAGATCTACCAACATTTCTCTATGCGTTGATAAAGGCCAAAATTCTTGTAGCGCCGATCTTCTCCAAAGAGGTCACAGATTTTCAAGGCAATGGTTGTTCATTTTAGAGAAAATGGAAATCAATGGTAGCAATCCTCATTTGAATGGAAATGGGAATCATTCTTCAGGCGATTCAAAGGTTGCCTTAAATGGAAAGTCTAGTAAGATGCCCACATTCATCAATCACGACGACTCAATGTTGCCGACATAG

Coding sequence (CDS)

ATTTTCTGCCCCACGATTTTATTTGGTGCGGGTAGTTCTGCCAACTTAACTTCAACAACATGGGTAAAGGAAAAAACTATGGGGTTTCAACCACGAAGCGTGTCCACGCAAAAGGCAGAAGTTGTGCCCACGTTTTTCTTAAGATCTACCAACATTTCTCTATGCGTTGATAAAGGCCAAAATTCTTGTAGCGCCGATCTTCTCCAAAGAGGTCACAGATTTTCAAGGCAATGGTTGTTCATTTTAGAGAAAATGGAAATCAATGGTAGCAATCCTCATTTGAATGGAAATGGGAATCATTCTTCAGGCGATTCAAAGGTTGCCTTAAATGGAAAGTCTAGTAAGATGCCCACATTCATCAATCACGACGACTCAATGTTGCCGACATAG

Protein sequence

IFCPTILFGAGSSANLTSTTWVKEKTMGFQPRSVSTQKAEVVPTFFLRSTNISLCVDKGQNSCSADLLQRGHRFSRQWLFILEKMEINGSNPHLNGNGNHSSGDSKVALNGKSSKMPTFINHDDSMLPT*
Homology
BLAST of CsaV3_1G018470 vs. NCBI nr
Match: KAE8652888.1 (hypothetical protein Csa_017670, partial [Cucumis sativus])

HSP 1 Score: 265.8 bits (678), Expect = 2.0e-67
Identity = 129/129 (100.00%), Postives = 129/129 (100.00%), Query Frame = 0

Query: 1   IFCPTILFGAGSSANLTSTTWVKEKTMGFQPRSVSTQKAEVVPTFFLRSTNISLCVDKGQ 60
           IFCPTILFGAGSSANLTSTTWVKEKTMGFQPRSVSTQKAEVVPTFFLRSTNISLCVDKGQ
Sbjct: 1   IFCPTILFGAGSSANLTSTTWVKEKTMGFQPRSVSTQKAEVVPTFFLRSTNISLCVDKGQ 60

Query: 61  NSCSADLLQRGHRFSRQWLFILEKMEINGSNPHLNGNGNHSSGDSKVALNGKSSKMPTFI 120
           NSCSADLLQRGHRFSRQWLFILEKMEINGSNPHLNGNGNHSSGDSKVALNGKSSKMPTFI
Sbjct: 61  NSCSADLLQRGHRFSRQWLFILEKMEINGSNPHLNGNGNHSSGDSKVALNGKSSKMPTFI 120

Query: 121 NHDDSMLPT 130
           NHDDSMLPT
Sbjct: 121 NHDDSMLPT 129

BLAST of CsaV3_1G018470 vs. NCBI nr
Match: XP_031736039.1 (uncharacterized protein LOC116401719 [Cucumis sativus])

HSP 1 Score: 213.8 bits (543), Expect = 9.0e-52
Identity = 103/103 (100.00%), Postives = 103/103 (100.00%), Query Frame = 0

Query: 27  MGFQPRSVSTQKAEVVPTFFLRSTNISLCVDKGQNSCSADLLQRGHRFSRQWLFILEKME 86
           MGFQPRSVSTQKAEVVPTFFLRSTNISLCVDKGQNSCSADLLQRGHRFSRQWLFILEKME
Sbjct: 1   MGFQPRSVSTQKAEVVPTFFLRSTNISLCVDKGQNSCSADLLQRGHRFSRQWLFILEKME 60

Query: 87  INGSNPHLNGNGNHSSGDSKVALNGKSSKMPTFINHDDSMLPT 130
           INGSNPHLNGNGNHSSGDSKVALNGKSSKMPTFINHDDSMLPT
Sbjct: 61  INGSNPHLNGNGNHSSGDSKVALNGKSSKMPTFINHDDSMLPT 103

BLAST of CsaV3_1G018470 vs. NCBI nr
Match: XP_008442713.1 (PREDICTED: uncharacterized protein LOC103486506 isoform X1 [Cucumis melo] >XP_008442714.1 PREDICTED: uncharacterized protein LOC103486506 isoform X1 [Cucumis melo] >KAA0043988.1 uncharacterized protein E6C27_scaffold236G003340 [Cucumis melo var. makuwa] >TYK25152.1 uncharacterized protein E5676_scaffold352G002770 [Cucumis melo var. makuwa])

HSP 1 Score: 77.4 bits (189), Expect = 1.0e-10
Identity = 35/41 (85.37%), Postives = 39/41 (95.12%), Query Frame = 0

Query: 82  LEKMEINGSNPHLNGNGNHSSGDSKVALNGKSSKMPTFINH 123
           +EK EING NP+LNGNGNHSSGDSKVALNGKS++MPTFINH
Sbjct: 1   MEKTEINGGNPNLNGNGNHSSGDSKVALNGKSNEMPTFINH 41

BLAST of CsaV3_1G018470 vs. NCBI nr
Match: XP_031739473.1 (uncharacterized protein LOC101221441 isoform X1 [Cucumis sativus])

HSP 1 Score: 77.0 bits (188), Expect = 1.3e-10
Identity = 35/41 (85.37%), Postives = 39/41 (95.12%), Query Frame = 0

Query: 82  LEKMEINGSNPHLNGNGNHSSGDSKVALNGKSSKMPTFINH 123
           +EKMEING NP+LNGNGNHSS DSKVALNGKS++MPTFINH
Sbjct: 1   MEKMEINGRNPNLNGNGNHSSNDSKVALNGKSNEMPTFINH 41

BLAST of CsaV3_1G018470 vs. NCBI nr
Match: XP_004137841.1 (uncharacterized protein LOC101221441 isoform X2 [Cucumis sativus] >KGN58990.1 hypothetical protein Csa_000823 [Cucumis sativus])

HSP 1 Score: 77.0 bits (188), Expect = 1.3e-10
Identity = 35/41 (85.37%), Postives = 39/41 (95.12%), Query Frame = 0

Query: 82  LEKMEINGSNPHLNGNGNHSSGDSKVALNGKSSKMPTFINH 123
           +EKMEING NP+LNGNGNHSS DSKVALNGKS++MPTFINH
Sbjct: 1   MEKMEINGRNPNLNGNGNHSSNDSKVALNGKSNEMPTFINH 41

BLAST of CsaV3_1G018470 vs. ExPASy TrEMBL
Match: A0A1S3B705 (uncharacterized protein LOC103486506 isoform X1 OS=Cucumis melo OX=3656 GN=LOC103486506 PE=4 SV=1)

HSP 1 Score: 77.4 bits (189), Expect = 4.9e-11
Identity = 35/41 (85.37%), Postives = 39/41 (95.12%), Query Frame = 0

Query: 82  LEKMEINGSNPHLNGNGNHSSGDSKVALNGKSSKMPTFINH 123
           +EK EING NP+LNGNGNHSSGDSKVALNGKS++MPTFINH
Sbjct: 1   MEKTEINGGNPNLNGNGNHSSGDSKVALNGKSNEMPTFINH 41

BLAST of CsaV3_1G018470 vs. ExPASy TrEMBL
Match: A0A5A7TM85 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold352G002770 PE=4 SV=1)

HSP 1 Score: 77.4 bits (189), Expect = 4.9e-11
Identity = 35/41 (85.37%), Postives = 39/41 (95.12%), Query Frame = 0

Query: 82  LEKMEINGSNPHLNGNGNHSSGDSKVALNGKSSKMPTFINH 123
           +EK EING NP+LNGNGNHSSGDSKVALNGKS++MPTFINH
Sbjct: 1   MEKTEINGGNPNLNGNGNHSSGDSKVALNGKSNEMPTFINH 41

BLAST of CsaV3_1G018470 vs. ExPASy TrEMBL
Match: A0A0A0LAJ4 (DUF4050 domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_3G740820 PE=4 SV=1)

HSP 1 Score: 77.0 bits (188), Expect = 6.4e-11
Identity = 35/41 (85.37%), Postives = 39/41 (95.12%), Query Frame = 0

Query: 82  LEKMEINGSNPHLNGNGNHSSGDSKVALNGKSSKMPTFINH 123
           +EKMEING NP+LNGNGNHSS DSKVALNGKS++MPTFINH
Sbjct: 1   MEKMEINGRNPNLNGNGNHSSNDSKVALNGKSNEMPTFINH 41

BLAST of CsaV3_1G018470 vs. ExPASy TrEMBL
Match: A0A6J1F1Z4 (uncharacterized protein LOC111441458 isoform X1 OS=Cucurbita moschata OX=3662 GN=LOC111441458 PE=4 SV=1)

HSP 1 Score: 76.6 bits (187), Expect = 8.3e-11
Identity = 36/48 (75.00%), Postives = 41/48 (85.42%), Query Frame = 0

Query: 75  SRQWLFILEKMEINGSNPHLNGNGNHSSGDSKVALNGKSSKMPTFINH 123
           SRQWLFI+EKMEING NP+L GNGNHSSGDS V    KS++MPTF+NH
Sbjct: 19  SRQWLFIMEKMEINGRNPNLKGNGNHSSGDSNV----KSNEMPTFVNH 62

BLAST of CsaV3_1G018470 vs. ExPASy TrEMBL
Match: A0A6J1J1B8 (uncharacterized protein LOC111481794 isoform X1 OS=Cucurbita maxima OX=3661 GN=LOC111481794 PE=4 SV=1)

HSP 1 Score: 70.1 bits (170), Expect = 7.8e-09
Identity = 34/48 (70.83%), Postives = 39/48 (81.25%), Query Frame = 0

Query: 75  SRQWLFILEKMEINGSNPHLNGNGNHSSGDSKVALNGKSSKMPTFINH 123
           SRQWLFI+EKMEING  P+L GNGNHSS DS V    KS++MPTF+NH
Sbjct: 19  SRQWLFIMEKMEINGIIPNLKGNGNHSSDDSNV----KSNEMPTFVNH 62

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
KAE8652888.12.0e-67100.00hypothetical protein Csa_017670, partial [Cucumis sativus][more]
XP_031736039.19.0e-52100.00uncharacterized protein LOC116401719 [Cucumis sativus][more]
XP_008442713.11.0e-1085.37PREDICTED: uncharacterized protein LOC103486506 isoform X1 [Cucumis melo] >XP_00... [more]
XP_031739473.11.3e-1085.37uncharacterized protein LOC101221441 isoform X1 [Cucumis sativus][more]
XP_004137841.11.3e-1085.37uncharacterized protein LOC101221441 isoform X2 [Cucumis sativus] >KGN58990.1 hy... [more]
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A1S3B7054.9e-1185.37uncharacterized protein LOC103486506 isoform X1 OS=Cucumis melo OX=3656 GN=LOC10... [more]
A0A5A7TM854.9e-1185.37Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold... [more]
A0A0A0LAJ46.4e-1185.37DUF4050 domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_3G740820 PE=... [more]
A0A6J1F1Z48.3e-1175.00uncharacterized protein LOC111441458 isoform X1 OS=Cucurbita moschata OX=3662 GN... [more]
A0A6J1J1B87.8e-0970.83uncharacterized protein LOC111481794 isoform X1 OS=Cucurbita maxima OX=3661 GN=L... [more]
Match NameE-valueIdentityDescription
InterPro
Analysis Name: InterPro Annotations of Cucumber (Chinese Long) v3
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 91..129
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 91..120

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CsaV3_1G018470.1CsaV3_1G018470.1mRNA