CsaV3_1G017050 (gene) Cucumber (Chinese Long) v3

Overview


Name	CsaV3_1G017050
Type	gene
Organism	Cucumis sativus L. var. sativus cv. Chinese Long (Cucumber (Chinese Long) v3)
Description	Unknown protein
Location	chr1: 11568871 .. 11570000 (-)
RNA-Seq Expression	CsaV3_1G017050
Synteny	CsaV3_1G017050

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonpolypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

AAAAAGAGAGAAAAAGAGTATCAACGAGTTGTGGAAAAAAAATAAACACCTACTTGTAGCCTTAGTCATCTCGAAAAAGAAGAAGAAGTTAATATAATGATTGATTATGCAACAACATATTGCTCTACGGTTAGTGTTTAATTCATTATCTTCTGCTTTATTTTGTTTAAAATTGCTCAACTTCAAAATAAAGAACAATTGTGTTTTCTTCTTCTTCTTCTTCTTTTTTTGCAAGGAATTGTGGTCCTTGAAACACAGAGTGATTGTAAACAAGAGAAACTGCAAATTTAGAAACACCAAACACACAATTGTTGTTAGAGGTTTAATTCTTTTACAAACAATAAATTTATCACACCCTATTGGAATAGACTGAGATAGTGCTCTATCTCTATCTAACCATGATAGTTAGAAATAGTCATCTATATCGATATATGTAAGATGGGCAATCCTAAACATCTATATGATTTCTTTTGAAATTTGTACTCTATATTTTTATAGATAGATGAAGAAGAACAAAATACCAAAACTACAGATAAGAGACACCAAAAAATAAGTGTTGACCCAAGTTTCATTCTTTTGTACACAATTGATTGCACAATCGTTTATATTTTATTACACAACCGTTTTGATGTTGTTGAACAATTGTTTAGATTTTGCTGCACAATCGTTTACATTTTGTTGCACGGCCATTTATACAACTACCTTTTTAATTCTTACTTTCAAACAGATGAAGATCAAACTGATAAAGAAGAAGAAGTTGAAGTACAAAGCGAAGAAGAATGAAACATTATATGAAAGTGATGAAGAAGGAAAATATGAGAAGGAAAACCAAAAGAAAACAAAGCCAAGAGCAAAACGTAAATATTGATAGTTCTTTATCTCTGTTTATCTAAGAAAAATAAATAACTATCCTAGTCTACCCTTCATTGTTCTTCTTATAAACTCCAATATTTTCTTGCAGCAAATCATTGAAGAAAAGAAACTAGAAAAAGAGGATGAGGAAGTGAAAGAAGAGCAAAATCAAGAAGATATAGATAATGAGAGTGAAGAAATTTTGTTTACAATAAGAAGAAGACAAAAGGGAAAACTAGTTGTTGATGATGACGATGAAACAGAAGAAGAGATTGCCA

mRNA sequence

ATGAAACATTATATGAAAGTGATGAAGAAGGAAAATATGAGAAGGAAAACCAAAAGAAAACAAAGCCAAGAGCAAAACCAAATCATTGAAGAAAAGAAACTAGAAAAAGAGGATGAGGAAGTGAAAGAAGAGCAAAATCAAGAAGATATAGATAATGAGAGTGAAGAAATTTTGTTTACAATAAGAAGAAGACAAAAGGGAAAACTAGTTGTTGATGATGACGATGAAACAGAAGAAGAGATTGCCA

Coding sequence (CDS)

ATGAAACATTATATGAAAGTGATGAAGAAGGAAAATATGAGAAGGAAAACCAAAAGAAAACAAAGCCAAGAGCAAAACCAAATCATTGAAGAAAAGAAACTAGAAAAAGAGGATGAGGAAGTGAAAGAAGAGCAAAATCAAGAAGATATAGATAATGAGAGTGAAGAAATTTTGTTTACAATAAGAAGAAGACAAAAGGGAAAACTAGTTGTTGATGATGACGATGAAACAGAAGAAGAGATTGCCA

Protein sequence

MKHYMKVMKKENMRRKTKRKQSQEQNQIIEEKKLEKEDEEVKEEQNQEDIDNESEEILFTIRRRQKGKLVVDDDDETEEEIAX

Homology

[Close]

BLAST of CsaV3_1G017050 vs. NCBI nr
Match: KAE8652864.1 (hypothetical protein Csa_013007, partial [Cucumis sativus])

HSP 1 Score: 139.8 bits (351), Expect = 1.1e-29
Identity = 82/82 (100.00%), Postives = 82/82 (100.00%), Query Frame = 0


Query: 1  MKHYMKVMKKENMRRKTKRKQSQEQNQIIEEKKLEKEDEEVKEEQNQEDIDNESEEILFT 60
          MKHYMKVMKKENMRRKTKRKQSQEQNQIIEEKKLEKEDEEVKEEQNQEDIDNESEEILFT
Sbjct: 1  MKHYMKVMKKENMRRKTKRKQSQEQNQIIEEKKLEKEDEEVKEEQNQEDIDNESEEILFT 60

Query: 61 IRRRQKGKLVVDDDDETEEEIA 83
          IRRRQKGKLVVDDDDETEEEIA
Sbjct: 61 IRRRQKGKLVVDDDDETEEEIA 82

[Close]

BLAST of CsaV3_1G017050 vs. NCBI nr
Match: KAE8637350.1 (hypothetical protein CSA_011900, partial [Cucumis sativus])

HSP 1 Score: 97.8 bits (242), Expect = 4.6e-17
Identity = 56/56 (100.00%), Postives = 56/56 (100.00%), Query Frame = 0


Query: 27 QIIEEKKLEKEDEEVKEEQNQEDIDNESEEILFTIRRRQKGKLVVDDDDETEEEIA 83
          QIIEEKKLEKEDEEVKEEQNQEDIDNESEEILFTIRRRQKGKLVVDDDDETEEEIA
Sbjct: 1  QIIEEKKLEKEDEEVKEEQNQEDIDNESEEILFTIRRRQKGKLVVDDDDETEEEIA 56

[Close]

BLAST of CsaV3_1G017050 vs. ExPASy TrEMBL
Match: A0A0A0LW59 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G181490 PE=4 SV=1)

HSP 1 Score: 139.8 bits (351), Expect = 5.1e-30
Identity = 82/82 (100.00%), Postives = 82/82 (100.00%), Query Frame = 0


Query: 1  MKHYMKVMKKENMRRKTKRKQSQEQNQIIEEKKLEKEDEEVKEEQNQEDIDNESEEILFT 60
          MKHYMKVMKKENMRRKTKRKQSQEQNQIIEEKKLEKEDEEVKEEQNQEDIDNESEEILFT
Sbjct: 1  MKHYMKVMKKENMRRKTKRKQSQEQNQIIEEKKLEKEDEEVKEEQNQEDIDNESEEILFT 60

Query: 61 IRRRQKGKLVVDDDDETEEEIA 83
          IRRRQKGKLVVDDDDETEEEIA
Sbjct: 61 IRRRQKGKLVVDDDDETEEEIA 82

The following BLAST results are available for this feature:

BLAST of CsaV3_1G017050 vs. NCBI nr


Match Name	E-value	Identity	Description
KAE8652864.1	1.1e-29	100.00	hypothetical protein Csa_013007, partial [Cucumis sativus]	[more]
KAE8637350.1	4.6e-17	100.00	hypothetical protein CSA_011900, partial [Cucumis sativus]	[more]

BLAST of CsaV3_1G017050 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of CsaV3_1G017050 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0LW59	5.1e-30	100.00	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G181490 PE=4 SV=1	[more]

BLAST of CsaV3_1G017050 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Cucumber (Chinese Long) v3
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	COILS	Coil	Coil	coord: 19..56
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 17..40
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..16
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..53

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CsaV3_1G017050.1	CsaV3_1G017050.1	mRNA