CsaV3_1G017030 (gene) Cucumber (Chinese Long) v3

Overview
NameCsaV3_1G017030
Typegene
OrganismCucumis sativus L. var. sativus cv. Chinese Long (Cucumber (Chinese Long) v3)
DescriptionNADH-u_ox-rdase domain-containing protein
Locationchr1: 11553855 .. 11555148 (+)
RNA-Seq ExpressionCsaV3_1G017030
SyntenyCsaV3_1G017030
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
TTGGGCCCAGCCCATGAAATACTCATTCATCTGTCAGCTCAGCAGACACTCACTTGATCGTCTTCAACCTCAACGAGTTGGCCAAGCGAGTTTTAGAGAGAGAGGAAGACGGCGGAGATCAGCAGCTTTAGCTACGGAGAAGACAAGATGAACACCGACATTACAGCGTCGACCAAGCCAGAGTACCCAGTAGTAGATCGGAACCCTCCATTCACTAAAGTCGTCGGCAATTTCGACACTCTCGATTACCTCCGTTTCGTCACCATCACCGGCGTTTCCGTCACCGTCGGTTATCTTTCCGGTATCAATTTCTTTCTTCCTTTTCCTTTTTTTTTTTTTATCTTCCATTTCGTTGAACCATCTTGAAAATCTCTTCCCCTGACTCTGCATTTTAGGGATTAAGCCCGGGATAAGGGGCCCATCAATGGTGACCGGTGGTCTAATTGGCCTGATGGGAGGCTTCATGTACGCTTATCAGAACTCGGCGGGTCGGCTTATGGGATTCTTCCCCAATGATGGCGAGGTAGCTCGTTATAAGAAATAAGATTGTGCGATTTAGGGTTTTTTCTTTTTCTCTTTTGCTTTTTTCCTCAAATTTGAGTTCTAATTGTGGACATCTTCACGATGTTTCAGTTATTAAGCGTGCAACCGGGTTGTATCAATAAGCAAATTGAAATTTCACTGTTTTCTGTGTTGCCCATTTTTCGTCTAAATGAAATAGTTGAAAAATTACATGATTCTTTGTTTTGATCAATAAACAAAGGTGACCCATTAAGGGATTTGGACGGATGAATCATATACTCGTCTGTTGTGCCATTGTAAGTTAGTAGTCCGTTTTTAATTCAAAGTGGTCTCATTAGATTACATTTTGTTGTCATATTGCCATGACTACTCTTTATTTCCGCAGAGTATCAGAAAATAGAAAATAGTAGCCTCAAGTGGGAGAAAGATGTCCTTTATGATTGTATCAAAAGAGTACCCCAACGCCAAATGATCTTGAAAAATTATTCTGTTGCATTTACTTCGGTAGTTTTTCATCTGATCTTTTGTGCTTTATTAGTTGCATTTCATCCTTCTAGCAGTCTTGTGTGCTCTAATTATGTGGTTGTCATCTACATATGGTAATGCACTTCAGAGTAATGGGCAGATATTGATCGTTCATATCAGGTTTTTTTGTTGCTTTTCCTTTATATGGCAGTGACAACTATTTAGGAGGGTAGATTATTTGCAGAAGTTGTCTAGAAATCTGGTGATGAATATGAAGTTTGTTTGTTTGAGCCTTTGGATGTTTATC

mRNA sequence

ATGAACACCGACATTACAGCGTCGACCAAGCCAGAGTACCCAGTAGTAGATCGGAACCCTCCATTCACTAAAGTCGTCGGCAATTTCGACACTCTCGATTACCTCCGTTTCGTCACCATCACCGGCGTTTCCGTCACCGTCGGTTATCTTTCCGGGATTAAGCCCGGGATAAGGGGCCCATCAATGGTGACCGGTGGTCTAATTGGCCTGATGGGAGGCTTCATGTACGCTTATCAGAACTCGGCGGGTCGGCTTATGGGATTCTTCCCCAATGATGGCGAGTGA

Coding sequence (CDS)

ATGAACACCGACATTACAGCGTCGACCAAGCCAGAGTACCCAGTAGTAGATCGGAACCCTCCATTCACTAAAGTCGTCGGCAATTTCGACACTCTCGATTACCTCCGTTTCGTCACCATCACCGGCGTTTCCGTCACCGTCGGTTATCTTTCCGGGATTAAGCCCGGGATAAGGGGCCCATCAATGGTGACCGGTGGTCTAATTGGCCTGATGGGAGGCTTCATGTACGCTTATCAGAACTCGGCGGGTCGGCTTATGGGATTCTTCCCCAATGATGGCGAGTGA

Protein sequence

MNTDITASTKPEYPVVDRNPPFTKVVGNFDTLDYLRFVTITGVSVTVGYLSGIKPGIRGPSMVTGGLIGLMGGFMYAYQNSAGRLMGFFPNDGE*
Homology
[Close]
BLAST of CsaV3_1G017030 vs. NCBI nr
Match: XP_011654950.1 (NADH-ubiquinone oxidoreductase 20.9 kDa subunit [Cucumis sativus] >XP_031745943.1 NADH-ubiquinone oxidoreductase 20.9 kDa subunit-like [Cucumis sativus])

HSP 1 Score: 194.9 bits (494), Expect = 3.2e-46
Identity = 94/94 (100.00%), Postives = 94/94 (100.00%), Query Frame = 0 

Query: 1  MNTDITASTKPEYPVVDRNPPFTKVVGNFDTLDYLRFVTITGVSVTVGYLSGIKPGIRGP 60
          MNTDITASTKPEYPVVDRNPPFTKVVGNFDTLDYLRFVTITGVSVTVGYLSGIKPGIRGP
Sbjct: 1  MNTDITASTKPEYPVVDRNPPFTKVVGNFDTLDYLRFVTITGVSVTVGYLSGIKPGIRGP 60

Query: 61 SMVTGGLIGLMGGFMYAYQNSAGRLMGFFPNDGE 95
          SMVTGGLIGLMGGFMYAYQNSAGRLMGFFPNDGE
Sbjct: 61 SMVTGGLIGLMGGFMYAYQNSAGRLMGFFPNDGE 94

[Close]
BLAST of CsaV3_1G017030 vs. NCBI nr
Match: KAE8637348.1 (hypothetical protein CSA_011898 [Cucumis sativus] >KAE8652862.1 hypothetical protein Csa_013000 [Cucumis sativus])

HSP 1 Score: 194.9 bits (494), Expect = 3.2e-46
Identity = 94/94 (100.00%), Postives = 94/94 (100.00%), Query Frame = 0 

Query: 1  MNTDITASTKPEYPVVDRNPPFTKVVGNFDTLDYLRFVTITGVSVTVGYLSGIKPGIRGP 60
          MNTDITASTKPEYPVVDRNPPFTKVVGNFDTLDYLRFVTITGVSVTVGYLSGIKPGIRGP
Sbjct: 1  MNTDITASTKPEYPVVDRNPPFTKVVGNFDTLDYLRFVTITGVSVTVGYLSGIKPGIRGP 60

Query: 61 SMVTGGLIGLMGGFMYAYQNSAGRLMGFFPNDGE 95
          SMVTGGLIGLMGGFMYAYQNSAGRLMGFFPNDGE
Sbjct: 61 SMVTGGLIGLMGGFMYAYQNSAGRLMGFFPNDGE 94

[Close]
BLAST of CsaV3_1G017030 vs. NCBI nr
Match: XP_008463609.1 (PREDICTED: NADH-ubiquinone oxidoreductase 20.9 kDa subunit [Cucumis melo] >XP_038894012.1 NADH-ubiquinone oxidoreductase 20.9 kDa subunit [Benincasa hispida])

HSP 1 Score: 194.5 bits (493), Expect = 4.1e-46
Identity = 93/94 (98.94%), Postives = 94/94 (100.00%), Query Frame = 0 

Query: 1  MNTDITASTKPEYPVVDRNPPFTKVVGNFDTLDYLRFVTITGVSVTVGYLSGIKPGIRGP 60
          MNTDITASTKPEYPV+DRNPPFTKVVGNFDTLDYLRFVTITGVSVTVGYLSGIKPGIRGP
Sbjct: 1  MNTDITASTKPEYPVIDRNPPFTKVVGNFDTLDYLRFVTITGVSVTVGYLSGIKPGIRGP 60

Query: 61 SMVTGGLIGLMGGFMYAYQNSAGRLMGFFPNDGE 95
          SMVTGGLIGLMGGFMYAYQNSAGRLMGFFPNDGE
Sbjct: 61 SMVTGGLIGLMGGFMYAYQNSAGRLMGFFPNDGE 94

[Close]
BLAST of CsaV3_1G017030 vs. NCBI nr
Match: XP_022142552.1 (NADH-ubiquinone oxidoreductase 20.9 kDa subunit [Momordica charantia] >XP_022925305.1 NADH-ubiquinone oxidoreductase 20.9 kDa subunit-like [Cucurbita moschata] >XP_022966760.1 NADH-ubiquinone oxidoreductase 20.9 kDa subunit-like [Cucurbita maxima] >XP_023001508.1 NADH-ubiquinone oxidoreductase 20.9 kDa subunit-like [Cucurbita maxima] >XP_023541604.1 NADH-ubiquinone oxidoreductase 20.9 kDa subunit-like [Cucurbita pepo subsp. pepo] >KAG6573532.1 hypothetical protein SDJN03_27419, partial [Cucurbita argyrosperma subsp. sororia] >KAG7012647.1 hypothetical protein SDJN02_25399 [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 193.0 bits (489), Expect = 1.2e-45
Identity = 92/94 (97.87%), Postives = 94/94 (100.00%), Query Frame = 0 

Query: 1  MNTDITASTKPEYPVVDRNPPFTKVVGNFDTLDYLRFVTITGVSVTVGYLSGIKPGIRGP 60
          MNTDITASTKPEYPV+DRNPPFTKVVGNFDTLDYLRFVTITGVSVTVGYLSGIKPGIRGP
Sbjct: 1  MNTDITASTKPEYPVIDRNPPFTKVVGNFDTLDYLRFVTITGVSVTVGYLSGIKPGIRGP 60

Query: 61 SMVTGGLIGLMGGFMYAYQNSAGRLMGFFPNDGE 95
          SMVTGGLIGLMGGFMYAYQNSAGRLMGFFPN+GE
Sbjct: 61 SMVTGGLIGLMGGFMYAYQNSAGRLMGFFPNEGE 94

[Close]
BLAST of CsaV3_1G017030 vs. NCBI nr
Match: KAG6583741.1 (Heterogeneous nuclear ribonucleoprotein 1, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 192.2 bits (487), Expect = 2.0e-45
Identity = 91/94 (96.81%), Postives = 94/94 (100.00%), Query Frame = 0 

Query: 1   MNTDITASTKPEYPVVDRNPPFTKVVGNFDTLDYLRFVTITGVSVTVGYLSGIKPGIRGP 60
           MNTDITASTKPEYPV+DRNPPFTKVVGNFDTLDYLRFVTITGVSVTVGYLSGIKPGIRGP
Sbjct: 166 MNTDITASTKPEYPVIDRNPPFTKVVGNFDTLDYLRFVTITGVSVTVGYLSGIKPGIRGP 225

Query: 61  SMVTGGLIGLMGGFMYAYQNSAGRLMGFFPNDGE 95
           SMVTGGLIGLMGGFMYAYQNSAGR+MGFFPN+GE
Sbjct: 226 SMVTGGLIGLMGGFMYAYQNSAGRIMGFFPNEGE 259

[Close]
BLAST of CsaV3_1G017030 vs. ExPASy TrEMBL
Match: A0A0A0LT27 (NADH-u_ox-rdase domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_1G181470 PE=4 SV=1)

HSP 1 Score: 194.9 bits (494), Expect = 1.5e-46
Identity = 94/94 (100.00%), Postives = 94/94 (100.00%), Query Frame = 0 

Query: 1   MNTDITASTKPEYPVVDRNPPFTKVVGNFDTLDYLRFVTITGVSVTVGYLSGIKPGIRGP 60
           MNTDITASTKPEYPVVDRNPPFTKVVGNFDTLDYLRFVTITGVSVTVGYLSGIKPGIRGP
Sbjct: 46  MNTDITASTKPEYPVVDRNPPFTKVVGNFDTLDYLRFVTITGVSVTVGYLSGIKPGIRGP 105

Query: 61  SMVTGGLIGLMGGFMYAYQNSAGRLMGFFPNDGE 95
           SMVTGGLIGLMGGFMYAYQNSAGRLMGFFPNDGE
Sbjct: 106 SMVTGGLIGLMGGFMYAYQNSAGRLMGFFPNDGE 139

[Close]
BLAST of CsaV3_1G017030 vs. ExPASy TrEMBL
Match: A0A1S3CJL9 (NADH-ubiquinone oxidoreductase 20.9 kDa subunit OS=Cucumis melo OX=3656 GN=LOC103501718 PE=4 SV=1)

HSP 1 Score: 194.5 bits (493), Expect = 2.0e-46
Identity = 93/94 (98.94%), Postives = 94/94 (100.00%), Query Frame = 0 

Query: 1  MNTDITASTKPEYPVVDRNPPFTKVVGNFDTLDYLRFVTITGVSVTVGYLSGIKPGIRGP 60
          MNTDITASTKPEYPV+DRNPPFTKVVGNFDTLDYLRFVTITGVSVTVGYLSGIKPGIRGP
Sbjct: 1  MNTDITASTKPEYPVIDRNPPFTKVVGNFDTLDYLRFVTITGVSVTVGYLSGIKPGIRGP 60

Query: 61 SMVTGGLIGLMGGFMYAYQNSAGRLMGFFPNDGE 95
          SMVTGGLIGLMGGFMYAYQNSAGRLMGFFPNDGE
Sbjct: 61 SMVTGGLIGLMGGFMYAYQNSAGRLMGFFPNDGE 94

[Close]
BLAST of CsaV3_1G017030 vs. ExPASy TrEMBL
Match: A0A6J1HSH8 (NADH-ubiquinone oxidoreductase 20.9 kDa subunit-like OS=Cucurbita maxima OX=3661 GN=LOC111466374 PE=4 SV=1)

HSP 1 Score: 193.0 bits (489), Expect = 5.8e-46
Identity = 92/94 (97.87%), Postives = 94/94 (100.00%), Query Frame = 0 

Query: 1  MNTDITASTKPEYPVVDRNPPFTKVVGNFDTLDYLRFVTITGVSVTVGYLSGIKPGIRGP 60
          MNTDITASTKPEYPV+DRNPPFTKVVGNFDTLDYLRFVTITGVSVTVGYLSGIKPGIRGP
Sbjct: 1  MNTDITASTKPEYPVIDRNPPFTKVVGNFDTLDYLRFVTITGVSVTVGYLSGIKPGIRGP 60

Query: 61 SMVTGGLIGLMGGFMYAYQNSAGRLMGFFPNDGE 95
          SMVTGGLIGLMGGFMYAYQNSAGRLMGFFPN+GE
Sbjct: 61 SMVTGGLIGLMGGFMYAYQNSAGRLMGFFPNEGE 94

[Close]
BLAST of CsaV3_1G017030 vs. ExPASy TrEMBL
Match: A0A6J1CN33 (NADH-ubiquinone oxidoreductase 20.9 kDa subunit OS=Momordica charantia OX=3673 GN=LOC111012637 PE=4 SV=1)

HSP 1 Score: 193.0 bits (489), Expect = 5.8e-46
Identity = 92/94 (97.87%), Postives = 94/94 (100.00%), Query Frame = 0 

Query: 1  MNTDITASTKPEYPVVDRNPPFTKVVGNFDTLDYLRFVTITGVSVTVGYLSGIKPGIRGP 60
          MNTDITASTKPEYPV+DRNPPFTKVVGNFDTLDYLRFVTITGVSVTVGYLSGIKPGIRGP
Sbjct: 1  MNTDITASTKPEYPVIDRNPPFTKVVGNFDTLDYLRFVTITGVSVTVGYLSGIKPGIRGP 60

Query: 61 SMVTGGLIGLMGGFMYAYQNSAGRLMGFFPNDGE 95
          SMVTGGLIGLMGGFMYAYQNSAGRLMGFFPN+GE
Sbjct: 61 SMVTGGLIGLMGGFMYAYQNSAGRLMGFFPNEGE 94

[Close]
BLAST of CsaV3_1G017030 vs. ExPASy TrEMBL
Match: A0A6J1EHK1 (NADH-ubiquinone oxidoreductase 20.9 kDa subunit-like OS=Cucurbita moschata OX=3662 GN=LOC111432598 PE=4 SV=1)

HSP 1 Score: 193.0 bits (489), Expect = 5.8e-46
Identity = 92/94 (97.87%), Postives = 94/94 (100.00%), Query Frame = 0 

Query: 1  MNTDITASTKPEYPVVDRNPPFTKVVGNFDTLDYLRFVTITGVSVTVGYLSGIKPGIRGP 60
          MNTDITASTKPEYPV+DRNPPFTKVVGNFDTLDYLRFVTITGVSVTVGYLSGIKPGIRGP
Sbjct: 1  MNTDITASTKPEYPVIDRNPPFTKVVGNFDTLDYLRFVTITGVSVTVGYLSGIKPGIRGP 60

Query: 61 SMVTGGLIGLMGGFMYAYQNSAGRLMGFFPNDGE 95
          SMVTGGLIGLMGGFMYAYQNSAGRLMGFFPN+GE
Sbjct: 61 SMVTGGLIGLMGGFMYAYQNSAGRLMGFFPNEGE 94

[Close]
BLAST of CsaV3_1G017030 vs. TAIR 10
Match: AT4G16450.1 (unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: photorespiration; LOCATED IN: mitochondrion, mitochondrial membrane, mitochondrial respiratory chain complex I, respiratory chain complex I, membrane; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 15 growth stages; Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). )

HSP 1 Score: 176.8 bits (447), Expect = 8.3e-45
Identity = 85/94 (90.43%), Postives = 88/94 (93.62%), Query Frame = 0 

Query: 1  MNTDITASTKPEYPVVDRNPPFTKVVGNFDTLDYLRFVTITGVSVTVGYLSGIKPGIRGP 60
          MNTDITA  K +YPVVDRNP FTKVVGNF TLDYLRF TITG+SVTVGYLSGIKPGI+GP
Sbjct: 1  MNTDITALEKAQYPVVDRNPAFTKVVGNFSTLDYLRFSTITGISVTVGYLSGIKPGIKGP 60

Query: 61 SMVTGGLIGLMGGFMYAYQNSAGRLMGFFPNDGE 95
          SMVTGGLIGLMGGFMYAYQNSAGRLMGFFPNDGE
Sbjct: 61 SMVTGGLIGLMGGFMYAYQNSAGRLMGFFPNDGE 94

[Close]
BLAST of CsaV3_1G017030 vs. TAIR 10
Match: AT4G16450.2 (unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: photorespiration; LOCATED IN: mitochondrion, mitochondrial membrane, mitochondrial respiratory chain complex I, respiratory chain complex I; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 15 growth stages. )

HSP 1 Score: 176.8 bits (447), Expect = 8.3e-45
Identity = 85/94 (90.43%), Postives = 88/94 (93.62%), Query Frame = 0 

Query: 1  MNTDITASTKPEYPVVDRNPPFTKVVGNFDTLDYLRFVTITGVSVTVGYLSGIKPGIRGP 60
          MNTDITA  K +YPVVDRNP FTKVVGNF TLDYLRF TITG+SVTVGYLSGIKPGI+GP
Sbjct: 1  MNTDITALEKAQYPVVDRNPAFTKVVGNFSTLDYLRFSTITGISVTVGYLSGIKPGIKGP 60

Query: 61 SMVTGGLIGLMGGFMYAYQNSAGRLMGFFPNDGE 95
          SMVTGGLIGLMGGFMYAYQNSAGRLMGFFPNDGE
Sbjct: 61 SMVTGGLIGLMGGFMYAYQNSAGRLMGFFPNDGE 94

The following BLAST results are available for this feature:
BLAST of CsaV3_1G017030 vs. NCBI nr
Match NameE-valueIdentityDescription
XP_011654950.13.2e-46100.00NADH-ubiquinone oxidoreductase 20.9 kDa subunit [Cucumis sativus] >XP_031745943.... [more]
KAE8637348.13.2e-46100.00hypothetical protein CSA_011898 [Cucumis sativus] >KAE8652862.1 hypothetical pro... [more]
XP_008463609.14.1e-4698.94PREDICTED: NADH-ubiquinone oxidoreductase 20.9 kDa subunit [Cucumis melo] >XP_03... [more]
XP_022142552.11.2e-4597.87NADH-ubiquinone oxidoreductase 20.9 kDa subunit [Momordica charantia] >XP_022925... [more]
KAG6583741.12.0e-4596.81Heterogeneous nuclear ribonucleoprotein 1, partial [Cucurbita argyrosperma subsp... [more]
BLAST of CsaV3_1G017030 vs. NCBI nr
Match NameE-valueIdentityDescription
BLAST of CsaV3_1G017030 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A0A0LT271.5e-46100.00NADH-u_ox-rdase domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_1G18... [more]
A0A1S3CJL92.0e-4698.94NADH-ubiquinone oxidoreductase 20.9 kDa subunit OS=Cucumis melo OX=3656 GN=LOC10... [more]
A0A6J1HSH85.8e-4697.87NADH-ubiquinone oxidoreductase 20.9 kDa subunit-like OS=Cucurbita maxima OX=3661... [more]
A0A6J1CN335.8e-4697.87NADH-ubiquinone oxidoreductase 20.9 kDa subunit OS=Momordica charantia OX=3673 G... [more]
A0A6J1EHK15.8e-4697.87NADH-ubiquinone oxidoreductase 20.9 kDa subunit-like OS=Cucurbita moschata OX=36... [more]
BLAST of CsaV3_1G017030 vs. TAIR 10
Match NameE-valueIdentityDescription
AT4G16450.18.3e-4590.43unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: photores... [more]
AT4G16450.28.3e-4590.43unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: photores... [more]
InterPro
Analysis Name: InterPro Annotations of Cucumber (Chinese Long) v3
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR019721NADH-ubiquinone oxidoreductase, 21kDa subunit, N-terminalPFAMPF10785NADH-u_ox-rdasecoord: 11..89
e-value: 2.6E-20
score: 72.9
NoneNo IPR availablePANTHERPTHR34062:SF2NADH-UBIQUINONE OXIDOREDUCTASE 20.9 KDA SUBUNIT-LIKEcoord: 1..94
NoneNo IPR availablePANTHERPTHR34062OXIDOREDUCTASE 21 KDA SUBUNIT, PUTATIVE (AFU_ORTHOLOGUE AFUA_4G04750)-RELATEDcoord: 1..94

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CsaV3_1G017030.1CsaV3_1G017030.1mRNA