CsaV3_1G015530 (gene) Cucumber (Chinese Long) v3

Overview


Name	CsaV3_1G015530
Type	gene
Organism	Cucumis sativus L. var. sativus cv. Chinese Long (Cucumber (Chinese Long) v3)
Description	Unknown protein
Location	chr1: 11061509 .. 11061979 (+)
RNA-Seq Expression	CsaV3_1G015530
Synteny	CsaV3_1G015530

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGATGGGAAGTGGTAAAAGGGGTCCCATTAAAGAGAAAGATGAAGAGAATGCACATTATTTGGATCCACAAAAACAGGTAAGAAAAGAAGGAAAAAGAAAGGGGCGGATTTGGAGCCACAGGATGGGATTTGAGAGGTCGATTTTATGGTTTAGGAGATTGAACGAAGTGGAAGAAGACAAATTGGGAAAAGAAATTGTCGGATGAATGATGATGAGGATGAAGGGAGAAAGAAAATCATAGTAATTTGTGTTGTAATTGTCTTTGGGTTCACTACTGCTTTTCCACCCTTTTATTGATTCTCTGTTTAAAGTACAATCCTTAAGTACAATTCTTCAGGTAATGGAAAAGATTGTGGCTAGCTTTTTCCTAGTGATTAAAGTTGTTTTTCTTGTAACTTTAATTTGTGACCGGTATCAAATAGCACCTCCTAGTAAAGTTGCTCATGTTTTTGCAACAGTAGAGATCTAA

mRNA sequence

ATGATGGGAAGTGGTAAAAGGGGTCCCATTAAAGAGAAAGATGAAGAGAATGCACATTATTTGGATCCACAAAAACAGGAGATTGAACGAAGTGGAAGAAGACAAATTGGGAAAAGAAATTGTCGGATGAATGATGATGAGGATGAAGGGAGAAAGAAAATCATAGTAATGGAAAAGATTGTGGCTAGCTTTTTCCTAGTGATTAAAGTTGTTTTTCTTGTAACTTTAATTTGTGACCGGTATCAAATAGCACCTCCTAGTAAAGTTGCTCATGTTTTTGCAACAGTAGAGATCTAA

Coding sequence (CDS)

ATGATGGGAAGTGGTAAAAGGGGTCCCATTAAAGAGAAAGATGAAGAGAATGCACATTATTTGGATCCACAAAAACAGGAGATTGAACGAAGTGGAAGAAGACAAATTGGGAAAAGAAATTGTCGGATGAATGATGATGAGGATGAAGGGAGAAAGAAAATCATAGTAATGGAAAAGATTGTGGCTAGCTTTTTCCTAGTGATTAAAGTTGTTTTTCTTGTAACTTTAATTTGTGACCGGTATCAAATAGCACCTCCTAGTAAAGTTGCTCATGTTTTTGCAACAGTAGAGATCTAA

Protein sequence

MMGSGKRGPIKEKDEENAHYLDPQKQEIERSGRRQIGKRNCRMNDDEDEGRKKIIVMEKIVASFFLVIKVVFLVTLICDRYQIAPPSKVAHVFATVEI*

Homology

[Close]

BLAST of CsaV3_1G015530 vs. NCBI nr
Match: KGN64998.1 (hypothetical protein Csa_022732 [Cucumis sativus])

HSP 1 Score: 191.0 bits (484), Expect = 4.8e-45
Identity = 98/98 (100.00%), Postives = 98/98 (100.00%), Query Frame = 0


Query: 1  MMGSGKRGPIKEKDEENAHYLDPQKQEIERSGRRQIGKRNCRMNDDEDEGRKKIIVMEKI 60
          MMGSGKRGPIKEKDEENAHYLDPQKQEIERSGRRQIGKRNCRMNDDEDEGRKKIIVMEKI
Sbjct: 1  MMGSGKRGPIKEKDEENAHYLDPQKQEIERSGRRQIGKRNCRMNDDEDEGRKKIIVMEKI 60

Query: 61 VASFFLVIKVVFLVTLICDRYQIAPPSKVAHVFATVEI 99
          VASFFLVIKVVFLVTLICDRYQIAPPSKVAHVFATVEI
Sbjct: 61 VASFFLVIKVVFLVTLICDRYQIAPPSKVAHVFATVEI 98

[Close]

BLAST of CsaV3_1G015530 vs. ExPASy TrEMBL
Match: A0A0A0LTC1 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G173180 PE=4 SV=1)

HSP 1 Score: 191.0 bits (484), Expect = 2.3e-45
Identity = 98/98 (100.00%), Postives = 98/98 (100.00%), Query Frame = 0


Query: 1  MMGSGKRGPIKEKDEENAHYLDPQKQEIERSGRRQIGKRNCRMNDDEDEGRKKIIVMEKI 60
          MMGSGKRGPIKEKDEENAHYLDPQKQEIERSGRRQIGKRNCRMNDDEDEGRKKIIVMEKI
Sbjct: 1  MMGSGKRGPIKEKDEENAHYLDPQKQEIERSGRRQIGKRNCRMNDDEDEGRKKIIVMEKI 60

Query: 61 VASFFLVIKVVFLVTLICDRYQIAPPSKVAHVFATVEI 99
          VASFFLVIKVVFLVTLICDRYQIAPPSKVAHVFATVEI
Sbjct: 61 VASFFLVIKVVFLVTLICDRYQIAPPSKVAHVFATVEI 98

The following BLAST results are available for this feature:

BLAST of CsaV3_1G015530 vs. NCBI nr


Match Name	E-value	Identity	Description
KGN64998.1	4.8e-45	100.00	hypothetical protein Csa_022732 [Cucumis sativus]	[more]

BLAST of CsaV3_1G015530 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of CsaV3_1G015530 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0LTC1	2.3e-45	100.00	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G173180 PE=4 SV=1	[more]

BLAST of CsaV3_1G015530 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Cucumber (Chinese Long) v3
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 7..45
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..45

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CsaV3_1G015530.1	CsaV3_1G015530.1	mRNA