CsaV3_1G014390 (gene) Cucumber (Chinese Long) v3

Overview
NameCsaV3_1G014390
Typegene
OrganismCucumis sativus L. var. sativus cv. Chinese Long (Cucumber (Chinese Long) v3)
DescriptionUnknown protein
Locationchr1: 9846350 .. 9846652 (-)
RNA-Seq ExpressionCsaV3_1G014390
SyntenyCsaV3_1G014390
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGAATTTGGAAATTGATGAAGAGGAAAGGGTAGCTGTACGTTTGATGAAGAGGAAGCTTGAGAAAACTATAGCCATAACTTTAGAAGAGAGGCAAAGAAGAAAGCCGGAGAAGAAACGAAGAACAAAGAGAGAAAAGGTAATCGGAGAGGAACTAAACAAAGAGAAACGGAAGAGGAACGAACGAAGAGAAAAAGAGAGTCGGAGAAGAAAGCCCAAGAACAAAGAGGAGAAACAAAGGGAAGAGAACAAGAATGGAACGAGGAGAAACTCTTTTTTGTTGTTCCCACAAATTTCTTATTAA

mRNA sequence

ATGAATTTGGAAATTGATGAAGAGGAAAGGGTAGCTGTACGTTTGATGAAGAGGAAGCTTGAGAAAACTATAGCCATAACTTTAGAAGAGAGGCAAAGAAGAAAGCCGGAGAAGAAACGAAGAACAAAGAGAGAAAAGGTAATCGGAGAGGAACTAAACAAAGAGAAACGGAAGAGGAACGAACGAAGAGAAAAAGAGAGTCGGAGAAGAAAGCCCAAGAACAAAGAGGAGAAACAAAGGGAAGAGAACAAGAATGGAACGAGGAGAAACTCTTTTTTGTTGTTCCCACAAATTTCTTATTAA

Coding sequence (CDS)

ATGAATTTGGAAATTGATGAAGAGGAAAGGGTAGCTGTACGTTTGATGAAGAGGAAGCTTGAGAAAACTATAGCCATAACTTTAGAAGAGAGGCAAAGAAGAAAGCCGGAGAAGAAACGAAGAACAAAGAGAGAAAAGGTAATCGGAGAGGAACTAAACAAAGAGAAACGGAAGAGGAACGAACGAAGAGAAAAAGAGAGTCGGAGAAGAAAGCCCAAGAACAAAGAGGAGAAACAAAGGGAAGAGAACAAGAATGGAACGAGGAGAAACTCTTTTTTGTTGTTCCCACAAATTTCTTATTAA

Protein sequence

MNLEIDEEERVAVRLMKRKLEKTIAITLEERQRRKPEKKRRTKREKVIGEELNKEKRKRNERREKESRRRKPKNKEEKQREENKNGTRRNSFLLFPQISY*
Homology
[Close]
BLAST of CsaV3_1G014390 vs. NCBI nr
Match: KGN64878.1 (hypothetical protein Csa_022742 [Cucumis sativus])

HSP 1 Score: 166.4 bits (420), Expect = 1.3e-37
Identity = 100/100 (100.00%), Postives = 100/100 (100.00%), Query Frame = 0 

Query: 1   MNLEIDEEERVAVRLMKRKLEKTIAITLEERQRRKPEKKRRTKREKVIGEELNKEKRKRN 60
           MNLEIDEEERVAVRLMKRKLEKTIAITLEERQRRKPEKKRRTKREKVIGEELNKEKRKRN
Sbjct: 1   MNLEIDEEERVAVRLMKRKLEKTIAITLEERQRRKPEKKRRTKREKVIGEELNKEKRKRN 60

Query: 61  ERREKESRRRKPKNKEEKQREENKNGTRRNSFLLFPQISY 101
           ERREKESRRRKPKNKEEKQREENKNGTRRNSFLLFPQISY
Sbjct: 61  ERREKESRRRKPKNKEEKQREENKNGTRRNSFLLFPQISY 100

[Close]
BLAST of CsaV3_1G014390 vs. ExPASy TrEMBL
Match: A0A0A0LSW1 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G144310 PE=4 SV=1)

HSP 1 Score: 166.4 bits (420), Expect = 6.2e-38
Identity = 100/100 (100.00%), Postives = 100/100 (100.00%), Query Frame = 0 

Query: 1   MNLEIDEEERVAVRLMKRKLEKTIAITLEERQRRKPEKKRRTKREKVIGEELNKEKRKRN 60
           MNLEIDEEERVAVRLMKRKLEKTIAITLEERQRRKPEKKRRTKREKVIGEELNKEKRKRN
Sbjct: 1   MNLEIDEEERVAVRLMKRKLEKTIAITLEERQRRKPEKKRRTKREKVIGEELNKEKRKRN 60

Query: 61  ERREKESRRRKPKNKEEKQREENKNGTRRNSFLLFPQISY 101
           ERREKESRRRKPKNKEEKQREENKNGTRRNSFLLFPQISY
Sbjct: 61  ERREKESRRRKPKNKEEKQREENKNGTRRNSFLLFPQISY 100

The following BLAST results are available for this feature:
BLAST of CsaV3_1G014390 vs. NCBI nr
Match NameE-valueIdentityDescription
KGN64878.11.3e-37100.00hypothetical protein Csa_022742 [Cucumis sativus][more]
BLAST of CsaV3_1G014390 vs. NCBI nr
Match NameE-valueIdentityDescription
BLAST of CsaV3_1G014390 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A0A0LSW16.2e-38100.00Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G144310 PE=4 SV=1[more]
BLAST of CsaV3_1G014390 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
InterPro
Analysis Name: InterPro Annotations of Cucumber (Chinese Long) v3
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 70..87
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 43..62
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 27..100

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CsaV3_1G014390.1CsaV3_1G014390.1mRNA