CsaV3_1G014050 (gene) Cucumber (Chinese Long) v3

Overview


Name	CsaV3_1G014050
Type	gene
Organism	Cucumis sativus L. var. sativus cv. Chinese Long (Cucumber (Chinese Long) v3)
Description	Unknown protein
Location	chr1: 9555054 .. 9555522 (+)
RNA-Seq Expression	CsaV3_1G014050
Synteny	CsaV3_1G014050

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGCATTGTTGTAACTCTACATGTCGTCTACCATCTCCGGTCATTGTCACGTACCAGATCACCGTCGACACTGGTCTCCATGGCACACGTTGTTCGTTTGCCATAACGTCTCTCCCTGTCACGTTTGAAGCCCAGTCGCTATCCACACAAAGCCTGTCGTGGAGTTTGAGCCTAGTCTTATTTCAGGTTGAACGTTCGAGTTCTCTCTGTCAAGCCGACATTCCTCCATTCACCGTTTGTCGAAGCTCCACCTAAAGCCAACCTTCCTTCCAGCATGCTTCCCTTAGCCATCCATCTCTATCCCGAGCTGCGACACTGTTCACCAACTGCCGAGCCAAATTCCCTAACTCAAGTCGTCAGCTTCAGTCCTAAGTTGTGCGCGTCGTTCTACTTTTTGTCGAGTGTCCAAGCTATATCCAAGTTGATCCTTCTCCCTTTCAGTCAAGAGCAAGTCGTAACCTCCTCCTAG

mRNA sequence

ATGCATTGTTGTAACTCTACATGTCGTCTACCATCTCCGGTCATTGTCACGTACCAGATCACCGTCGACACTGGTCTCCATGGCACACGTTGTTCGTTGAACGTTCGAGTTCTCTCTGTCAAGCCGACATTCCTCCATTCACCGTTTGTCGAAGCTCCACCTAAAGCCAACCTTCCTTCCAGCATGCTTCCCTTAGCCATCCATCTCTATCCCGAGCTGCGACACTGTTCACCAACTGCCGAGCCAAATTCCCTAACTCAAGTCGTCAGCTTCAGTCCTAAGTTGTGCGCGTCGTTCTACTTTTTGTCGAGTGTCCAAGCTATATCCAAGTTGATCCTTCTCCCTTTCAGTCAAGAGCAAGTCGTAACCTCCTCCTAG

Coding sequence (CDS)

ATGCATTGTTGTAACTCTACATGTCGTCTACCATCTCCGGTCATTGTCACGTACCAGATCACCGTCGACACTGGTCTCCATGGCACACGTTGTTCGTTGAACGTTCGAGTTCTCTCTGTCAAGCCGACATTCCTCCATTCACCGTTTGTCGAAGCTCCACCTAAAGCCAACCTTCCTTCCAGCATGCTTCCCTTAGCCATCCATCTCTATCCCGAGCTGCGACACTGTTCACCAACTGCCGAGCCAAATTCCCTAACTCAAGTCGTCAGCTTCAGTCCTAAGTTGTGCGCGTCGTTCTACTTTTTGTCGAGTGTCCAAGCTATATCCAAGTTGATCCTTCTCCCTTTCAGTCAAGAGCAAGTCGTAACCTCCTCCTAG

Protein sequence

MHCCNSTCRLPSPVIVTYQITVDTGLHGTRCSLNVRVLSVKPTFLHSPFVEAPPKANLPSSMLPLAIHLYPELRHCSPTAEPNSLTQVVSFSPKLCASFYFLSSVQAISKLILLPFSQEQVVTSS*

Homology

[Close]

BLAST of CsaV3_1G014050 vs. NCBI nr
Match: KGN64848.1 (hypothetical protein Csa_022743 [Cucumis sativus])

HSP 1 Score: 253.4 bits (646), Expect = 9.9e-64
Identity = 125/125 (100.00%), Postives = 125/125 (100.00%), Query Frame = 0


Query: 1   MHCCNSTCRLPSPVIVTYQITVDTGLHGTRCSLNVRVLSVKPTFLHSPFVEAPPKANLPS 60
           MHCCNSTCRLPSPVIVTYQITVDTGLHGTRCSLNVRVLSVKPTFLHSPFVEAPPKANLPS
Sbjct: 1   MHCCNSTCRLPSPVIVTYQITVDTGLHGTRCSLNVRVLSVKPTFLHSPFVEAPPKANLPS 60

Query: 61  SMLPLAIHLYPELRHCSPTAEPNSLTQVVSFSPKLCASFYFLSSVQAISKLILLPFSQEQ 120
           SMLPLAIHLYPELRHCSPTAEPNSLTQVVSFSPKLCASFYFLSSVQAISKLILLPFSQEQ
Sbjct: 61  SMLPLAIHLYPELRHCSPTAEPNSLTQVVSFSPKLCASFYFLSSVQAISKLILLPFSQEQ 120

Query: 121 VVTSS 126
           VVTSS
Sbjct: 121 VVTSS 125

[Close]

BLAST of CsaV3_1G014050 vs. ExPASy TrEMBL
Match: A0A0A0LSS7 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G132090 PE=4 SV=1)

HSP 1 Score: 253.4 bits (646), Expect = 4.8e-64
Identity = 125/125 (100.00%), Postives = 125/125 (100.00%), Query Frame = 0


Query: 1   MHCCNSTCRLPSPVIVTYQITVDTGLHGTRCSLNVRVLSVKPTFLHSPFVEAPPKANLPS 60
           MHCCNSTCRLPSPVIVTYQITVDTGLHGTRCSLNVRVLSVKPTFLHSPFVEAPPKANLPS
Sbjct: 1   MHCCNSTCRLPSPVIVTYQITVDTGLHGTRCSLNVRVLSVKPTFLHSPFVEAPPKANLPS 60

Query: 61  SMLPLAIHLYPELRHCSPTAEPNSLTQVVSFSPKLCASFYFLSSVQAISKLILLPFSQEQ 120
           SMLPLAIHLYPELRHCSPTAEPNSLTQVVSFSPKLCASFYFLSSVQAISKLILLPFSQEQ
Sbjct: 61  SMLPLAIHLYPELRHCSPTAEPNSLTQVVSFSPKLCASFYFLSSVQAISKLILLPFSQEQ 120

Query: 121 VVTSS 126
           VVTSS
Sbjct: 121 VVTSS 125

The following BLAST results are available for this feature:

BLAST of CsaV3_1G014050 vs. NCBI nr


Match Name	E-value	Identity	Description
KGN64848.1	9.9e-64	100.00	hypothetical protein Csa_022743 [Cucumis sativus]	[more]

BLAST of CsaV3_1G014050 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of CsaV3_1G014050 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0LSS7	4.8e-64	100.00	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G132090 PE=4 SV=1	[more]

BLAST of CsaV3_1G014050 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CsaV3_1G014050.1	CsaV3_1G014050.1	mRNA