CsaV3_1G012690 (gene) Cucumber (Chinese Long) v3

Overview
NameCsaV3_1G012690
Typegene
OrganismCucumis sativus L. var. sativus cv. Chinese Long (Cucumber (Chinese Long) v3)
DescriptionUnknown protein
Locationchr1: 7946346 .. 7946988 (-)
RNA-Seq ExpressionCsaV3_1G012690
SyntenyCsaV3_1G012690
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
TAAGAATATCCAATCAAATATAAAAATAACCATTTACAATCAAGAGATCAGATTGGTACAAATAGAACATACTTCAACTGGATTATTATAGCTAGATTTTCGACCTAATAGTCGCACACTCAGGAAATACACACCAGAAAAGATTTTTTAAAAAATATGAAGAATTTATTACAAATGTCTATAGCCTCTTGAAAAAAATGAGCAAGAACACACAGCAGAAATCCCATATCTCTCCCACCAATTAAAAGGAGACTCCATGAAAAATAAGAGGTGGCGGTGGTGCGGGATAAGGCGGAGGAGCATCGACGGTTCTAGCGCTGGTGACGAGGTCTCGGATGGGTCTGCAGAGTATTTCTTCAGCCATGAAAGTCGCCAAAGCTGCGGAATTAACAAGGCTCTCAAGAATTTGAGCTTTGATACGACCGCGCTTTGGTGGAAGGGTAAAGATCTTCCCCTTTGAAGCTGTTGAAGATGCTGCTGCCATGGCGGAAGAAGAAGAAGAAAAAAGAGAAGAGCTCGAGAGAAGAAGAAGAAGAAGAAGAGAAGGAGGGAAGAATTGAAGGACCCCAAAGATGCATGTGGGGACTTATAGGGCCAACGAGAAATTTTGGGGGTTCTTTTTGGCAAATATTGAATAGTGACA

mRNA sequence

ATGAAAAATAAGAGGTGGCGGTGGTGCGGGATAAGGCGGAGGAGCATCGACGGTTCTAGCGCTGGTGACGAGGTCTCGGATGGGTCTGCAGAGTATTTCTTCAGCCATGAAAGTCGCCAAAGCTGCGGAATTAACAAGGCTCTCAAGAATTTGAGCTTTGATACGACCGCGCTTTGGTGGAAGGGTAAAGATCTTCCCCTTTGA

Coding sequence (CDS)

ATGAAAAATAAGAGGTGGCGGTGGTGCGGGATAAGGCGGAGGAGCATCGACGGTTCTAGCGCTGGTGACGAGGTCTCGGATGGGTCTGCAGAGTATTTCTTCAGCCATGAAAGTCGCCAAAGCTGCGGAATTAACAAGGCTCTCAAGAATTTGAGCTTTGATACGACCGCGCTTTGGTGGAAGGGTAAAGATCTTCCCCTTTGA

Protein sequence

MKNKRWRWCGIRRRSIDGSSAGDEVSDGSAEYFFSHESRQSCGINKALKNLSFDTTALWWKGKDLPL*
Homology
[Close]
BLAST of CsaV3_1G012690 vs. NCBI nr
Match: KAE8652729.1 (hypothetical protein Csa_014074 [Cucumis sativus])

HSP 1 Score: 147.1 bits (370), Expect = 5.4e-32
Identity = 67/67 (100.00%), Postives = 67/67 (100.00%), Query Frame = 0 

Query: 1  MKNKRWRWCGIRRRSIDGSSAGDEVSDGSAEYFFSHESRQSCGINKALKNLSFDTTALWW 60
          MKNKRWRWCGIRRRSIDGSSAGDEVSDGSAEYFFSHESRQSCGINKALKNLSFDTTALWW
Sbjct: 1  MKNKRWRWCGIRRRSIDGSSAGDEVSDGSAEYFFSHESRQSCGINKALKNLSFDTTALWW 60

Query: 61 KGKDLPL 68
          KGKDLPL
Sbjct: 61 KGKDLPL 67

[Close]
BLAST of CsaV3_1G012690 vs. ExPASy TrEMBL
Match: A0A0A0LV64 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G479100 PE=4 SV=1)

HSP 1 Score: 126.3 bits (316), Expect = 4.8e-26
Identity = 60/68 (88.24%), Postives = 62/68 (91.18%), Query Frame = 0 

Query: 1   MKNK-RWRWCGIRRRSIDGSSAGDEVSDGSAEYFFSHESRQSCGINKALKNLSFDTTALW 60
           MKNK RWR CG RRR+IDGSS GDEVSD SAEYFFSHESRQSCGINKALKNLSFDTTA W
Sbjct: 43  MKNKRRWRSCGSRRRNIDGSSTGDEVSDESAEYFFSHESRQSCGINKALKNLSFDTTAFW 102

Query: 61  WKGKDLPL 68
           WKG+DLPL
Sbjct: 103 WKGRDLPL 110

The following BLAST results are available for this feature:
BLAST of CsaV3_1G012690 vs. NCBI nr
Match NameE-valueIdentityDescription
KAE8652729.15.4e-32100.00hypothetical protein Csa_014074 [Cucumis sativus][more]
BLAST of CsaV3_1G012690 vs. NCBI nr
Match NameE-valueIdentityDescription
BLAST of CsaV3_1G012690 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A0A0LV644.8e-2688.24Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G479100 PE=4 SV=1[more]
BLAST of CsaV3_1G012690 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CsaV3_1G012690.1CsaV3_1G012690.1mRNA