CsaV3_1G010900 (gene) Cucumber (Chinese Long) v3

Overview
NameCsaV3_1G010900
Typegene
OrganismCucumis sativus L. var. sativus cv. Chinese Long (Cucumber (Chinese Long) v3)
DescriptionPatatin
Locationchr1: 6764615 .. 6765836 (-)
RNA-Seq ExpressionCsaV3_1G010900
SyntenyCsaV3_1G010900
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGCTGCAATTGCTCCTGTTGCCATTGGAACTCGAGGAACCATTGGTTCACTCGTCAAGAAGGAAATAGATTATTTTGCCAAGATTGAGCTTGAAACCTCCATCAGCTCACAGAGGTCTCAAGGACCTGAAATGGCTTCGTCTGGCTGTAGAAGTTCACCACCCACCTTCTGGCAATCTTTAATGTCATGGCGAAGGAAGACGAAGCTAACCAGCAATCGCTTTGTTACAAAAATGTGCTCGACTTTTGATGCTTCGAGAAGCAATCGAATGAATAAGATTTCTGGGTTGAGTTATACGATCCTTCAGAATGATTTCCATAGCTTGCACATGTAGATGCAGATGGATGTTTCATAATCCTCAGAATATGTATCATGAGGTCAGGATCTGCAAGAGAAGCTAAAAGGCAGCTTTTCTTAAATTTGAGTTGTTCAATGTTGCTGGTGCTTTATATGGTTTGTGTTTCCAAATTCTATGAAGGAACTTCCTAGGATTTCCAAGCCACAGAGAAAGGGAACCAATTAGCTGTTTCAAGTTTCAATCATCAAGGTACAATCCAGTTTAGGAGAAAATATTCAATTGTATGGAAGAACTGTGGCTCTTCAGATGTTTCTCCTTGCAGGTCCATGAGACAGAGAAGAGAGAGGAAAAGAATTAGTGCAGAGATGTAATATAGTTGTGAAAAATATAAGAAATTCTTCAATTTTGTGATCTTCATTACACTTTCCTGCCTCCCCCATACACCTCAGATTCAAGAATGAGCAAACACAATTGTAACTGGCACTACAAACAACCCAGGATCTCACATATATTTACGTTAGTTTAAAAAAAACTACCTAGTGGCACTTTATTGTATTTTGAAACATTCTCTCTAAAAATATTAGTTCTCTTGGACACATGGTTCACCAAGTATATTTGTTTTCGTAGCAAATCAAAAAATTGAAGACATGCAGAAGAAACATAAGCATTTTATCAGGCAATTACTTGCTATCCAAATTCACCATCGCACAGAGGGAATATTTTGAATTATAACAAGAAAGATATGATTAAATCTGAAGACGCATAAAATCCAATGTTAAGTTTCATCTTTATTGACATACAAAATTGCTCAAAACAATCTAGCTTCCATCAATACAGCAATTACTAACCTAACAGGAAGGTCAACGACAACATTTCAAGCACATTATCACCCTTCTTGAAGCAGGTCAGAGCCTACCAATAG

mRNA sequence

ATGGCTGCAATTGCTCCTGTTGCCATTGGAACTCGAGGAACCATTGGTTCACTCGTCAAGAAGGAAATAGATTATTTTGCCAAGATTGAGCTTGAAACCTCCATCAGCTCACAGAGGTCTCAAGGACCTGAAATGGCTTCGTCTGGCTGTAGAAGTTCACCACCCACCTTCTGGCAATCTTTAATGTCATGGCGAAGGAAGACGAAGCTAACCAGCAATCGCTTTGTTACAAAAATGTGCTCGACTTTTGATGCTTCGAGAAGCAATCGAATGAATAAGATTTCTGGGTTGAGTTATACGATCCTTCAGAATGATTTCCATAGCTTGCACATGAAGGTCAACGACAACATTTCAAGCACATTATCACCCTTCTTGAAGCAGGTCAGAGCCTACCAATAG

Coding sequence (CDS)

ATGGCTGCAATTGCTCCTGTTGCCATTGGAACTCGAGGAACCATTGGTTCACTCGTCAAGAAGGAAATAGATTATTTTGCCAAGATTGAGCTTGAAACCTCCATCAGCTCACAGAGGTCTCAAGGACCTGAAATGGCTTCGTCTGGCTGTAGAAGTTCACCACCCACCTTCTGGCAATCTTTAATGTCATGGCGAAGGAAGACGAAGCTAACCAGCAATCGCTTTGTTACAAAAATGTGCTCGACTTTTGATGCTTCGAGAAGCAATCGAATGAATAAGATTTCTGGGTTGAGTTATACGATCCTTCAGAATGATTTCCATAGCTTGCACATGAAGGTCAACGACAACATTTCAAGCACATTATCACCCTTCTTGAAGCAGGTCAGAGCCTACCAATAG

Protein sequence

MAAIAPVAIGTRGTIGSLVKKEIDYFAKIELETSISSQRSQGPEMASSGCRSSPPTFWQSLMSWRRKTKLTSNRFVTKMCSTFDASRSNRMNKISGLSYTILQNDFHSLHMKVNDNISSTLSPFLKQVRAYQ*
Homology
BLAST of CsaV3_1G010900 vs. NCBI nr
Match: KGN64543.2 (hypothetical protein Csa_013063 [Cucumis sativus])

HSP 1 Score: 258.8 bits (660), Expect = 2.5e-65
Identity = 132/132 (100.00%), Postives = 132/132 (100.00%), Query Frame = 0

Query: 1   MAAIAPVAIGTRGTIGSLVKKEIDYFAKIELETSISSQRSQGPEMASSGCRSSPPTFWQS 60
           MAAIAPVAIGTRGTIGSLVKKEIDYFAKIELETSISSQRSQGPEMASSGCRSSPPTFWQS
Sbjct: 1   MAAIAPVAIGTRGTIGSLVKKEIDYFAKIELETSISSQRSQGPEMASSGCRSSPPTFWQS 60

Query: 61  LMSWRRKTKLTSNRFVTKMCSTFDASRSNRMNKISGLSYTILQNDFHSLHMKVNDNISST 120
           LMSWRRKTKLTSNRFVTKMCSTFDASRSNRMNKISGLSYTILQNDFHSLHMKVNDNISST
Sbjct: 61  LMSWRRKTKLTSNRFVTKMCSTFDASRSNRMNKISGLSYTILQNDFHSLHMKVNDNISST 120

Query: 121 LSPFLKQVRAYQ 133
           LSPFLKQVRAYQ
Sbjct: 121 LSPFLKQVRAYQ 132

BLAST of CsaV3_1G010900 vs. NCBI nr
Match: XP_011648422.1 (uncharacterized protein LOC105434455 [Cucumis sativus])

HSP 1 Score: 217.6 bits (553), Expect = 6.4e-53
Identity = 111/111 (100.00%), Postives = 111/111 (100.00%), Query Frame = 0

Query: 1   MAAIAPVAIGTRGTIGSLVKKEIDYFAKIELETSISSQRSQGPEMASSGCRSSPPTFWQS 60
           MAAIAPVAIGTRGTIGSLVKKEIDYFAKIELETSISSQRSQGPEMASSGCRSSPPTFWQS
Sbjct: 1   MAAIAPVAIGTRGTIGSLVKKEIDYFAKIELETSISSQRSQGPEMASSGCRSSPPTFWQS 60

Query: 61  LMSWRRKTKLTSNRFVTKMCSTFDASRSNRMNKISGLSYTILQNDFHSLHM 112
           LMSWRRKTKLTSNRFVTKMCSTFDASRSNRMNKISGLSYTILQNDFHSLHM
Sbjct: 61  LMSWRRKTKLTSNRFVTKMCSTFDASRSNRMNKISGLSYTILQNDFHSLHM 111

BLAST of CsaV3_1G010900 vs. NCBI nr
Match: XP_016898893.1 (PREDICTED: uncharacterized protein LOC103485409 [Cucumis melo])

HSP 1 Score: 210.3 bits (534), Expect = 1.0e-50
Identity = 105/111 (94.59%), Postives = 109/111 (98.20%), Query Frame = 0

Query: 1   MAAIAPVAIGTRGTIGSLVKKEIDYFAKIELETSISSQRSQGPEMASSGCRSSPPTFWQS 60
           MAA APVAIGTRGTIGSL+KKEIDYFAKIELETSISSQRSQGPEMASSGCRSSPPTFWQS
Sbjct: 1   MAATAPVAIGTRGTIGSLIKKEIDYFAKIELETSISSQRSQGPEMASSGCRSSPPTFWQS 60

Query: 61  LMSWRRKTKLTSNRFVTKMCSTFDASRSNRMNKISGLSYTILQNDFHSLHM 112
           +MSWRRK KLTSNRF+TKMCSTFDASRSNRMNKISGLSYTILQNDFHSLH+
Sbjct: 61  IMSWRRKKKLTSNRFITKMCSTFDASRSNRMNKISGLSYTILQNDFHSLHV 111

BLAST of CsaV3_1G010900 vs. NCBI nr
Match: KAA0056869.1 (hypothetical protein E6C27_scaffold96G00380 [Cucumis melo var. makuwa] >TYJ99372.1 hypothetical protein E5676_scaffold248G005900 [Cucumis melo var. makuwa])

HSP 1 Score: 182.6 bits (462), Expect = 2.3e-42
Identity = 91/97 (93.81%), Postives = 95/97 (97.94%), Query Frame = 0

Query: 1   MAAIAPVAIGTRGTIGSLVKKEIDYFAKIELETSISSQRSQGPEMASSGCRSSPPTFWQS 60
           MAA APVAIGTRGTIGSL+KKEIDYFAKIELETSISSQRSQGPEMASSGCRSSPPTFWQS
Sbjct: 17  MAATAPVAIGTRGTIGSLIKKEIDYFAKIELETSISSQRSQGPEMASSGCRSSPPTFWQS 76

Query: 61  LMSWRRKTKLTSNRFVTKMCSTFDASRSNRMNKISGL 98
           +MSWRRK KLTSNRF+TKMCSTFDASRSNRMNKISG+
Sbjct: 77  IMSWRRKKKLTSNRFITKMCSTFDASRSNRMNKISGI 113

BLAST of CsaV3_1G010900 vs. NCBI nr
Match: KAG7019678.1 (hypothetical protein SDJN02_18641, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 162.2 bits (409), Expect = 3.2e-36
Identity = 86/131 (65.65%), Postives = 102/131 (77.86%), Query Frame = 0

Query: 1   MAAIAPVAIGTRGTIGSLVKKEIDYFAKIELE--TSISSQRSQGPEMASSGCRSSPPTFW 60
           MAA A VAIGTRGTIGSL+KKEIDYFAKIELE  +S SSQR Q P+MA+SGC S PPTFW
Sbjct: 17  MAATASVAIGTRGTIGSLIKKEIDYFAKIELERCSSRSSQRPQAPDMATSGCSSLPPTFW 76

Query: 61  QSLMSWRRKTKLTSNRFVTKMCST-FDASRSNRMNKISGLSYTILQNDFHSLHMKVNDNI 120
            S+MSWRRK K + +RFV K+CS+ FD S SN+MNKISG +YTILQN+FHSLHM + +  
Sbjct: 77  HSVMSWRRKKKRSRSRFVPKICSSAFDVSESNQMNKISGFNYTILQNNFHSLHMSMRERE 136

Query: 121 SSTLSPFLKQV 129
                 FL ++
Sbjct: 137 EKGKKQFLWKI 147

BLAST of CsaV3_1G010900 vs. ExPASy TrEMBL
Match: A0A0A0LX43 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G063600 PE=4 SV=1)

HSP 1 Score: 217.6 bits (553), Expect = 3.1e-53
Identity = 111/111 (100.00%), Postives = 111/111 (100.00%), Query Frame = 0

Query: 1   MAAIAPVAIGTRGTIGSLVKKEIDYFAKIELETSISSQRSQGPEMASSGCRSSPPTFWQS 60
           MAAIAPVAIGTRGTIGSLVKKEIDYFAKIELETSISSQRSQGPEMASSGCRSSPPTFWQS
Sbjct: 17  MAAIAPVAIGTRGTIGSLVKKEIDYFAKIELETSISSQRSQGPEMASSGCRSSPPTFWQS 76

Query: 61  LMSWRRKTKLTSNRFVTKMCSTFDASRSNRMNKISGLSYTILQNDFHSLHM 112
           LMSWRRKTKLTSNRFVTKMCSTFDASRSNRMNKISGLSYTILQNDFHSLHM
Sbjct: 77  LMSWRRKTKLTSNRFVTKMCSTFDASRSNRMNKISGLSYTILQNDFHSLHM 127

BLAST of CsaV3_1G010900 vs. ExPASy TrEMBL
Match: A0A1S4DSE9 (uncharacterized protein LOC103485409 OS=Cucumis melo OX=3656 GN=LOC103485409 PE=4 SV=1)

HSP 1 Score: 210.3 bits (534), Expect = 4.9e-51
Identity = 105/111 (94.59%), Postives = 109/111 (98.20%), Query Frame = 0

Query: 1   MAAIAPVAIGTRGTIGSLVKKEIDYFAKIELETSISSQRSQGPEMASSGCRSSPPTFWQS 60
           MAA APVAIGTRGTIGSL+KKEIDYFAKIELETSISSQRSQGPEMASSGCRSSPPTFWQS
Sbjct: 1   MAATAPVAIGTRGTIGSLIKKEIDYFAKIELETSISSQRSQGPEMASSGCRSSPPTFWQS 60

Query: 61  LMSWRRKTKLTSNRFVTKMCSTFDASRSNRMNKISGLSYTILQNDFHSLHM 112
           +MSWRRK KLTSNRF+TKMCSTFDASRSNRMNKISGLSYTILQNDFHSLH+
Sbjct: 61  IMSWRRKKKLTSNRFITKMCSTFDASRSNRMNKISGLSYTILQNDFHSLHV 111

BLAST of CsaV3_1G010900 vs. ExPASy TrEMBL
Match: A0A5A7UTL1 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold248G005900 PE=4 SV=1)

HSP 1 Score: 182.6 bits (462), Expect = 1.1e-42
Identity = 91/97 (93.81%), Postives = 95/97 (97.94%), Query Frame = 0

Query: 1   MAAIAPVAIGTRGTIGSLVKKEIDYFAKIELETSISSQRSQGPEMASSGCRSSPPTFWQS 60
           MAA APVAIGTRGTIGSL+KKEIDYFAKIELETSISSQRSQGPEMASSGCRSSPPTFWQS
Sbjct: 17  MAATAPVAIGTRGTIGSLIKKEIDYFAKIELETSISSQRSQGPEMASSGCRSSPPTFWQS 76

Query: 61  LMSWRRKTKLTSNRFVTKMCSTFDASRSNRMNKISGL 98
           +MSWRRK KLTSNRF+TKMCSTFDASRSNRMNKISG+
Sbjct: 77  IMSWRRKKKLTSNRFITKMCSTFDASRSNRMNKISGI 113

BLAST of CsaV3_1G010900 vs. ExPASy TrEMBL
Match: A0A6J1CHB1 (uncharacterized protein LOC111010862 OS=Momordica charantia OX=3673 GN=LOC111010862 PE=4 SV=1)

HSP 1 Score: 150.2 bits (378), Expect = 6.0e-33
Identity = 80/112 (71.43%), Postives = 89/112 (79.46%), Query Frame = 0

Query: 1   MAAIAPVAIGTRGTIGSLVKKEIDYFAKIELETSISSQRSQGPEMASSGCR-SSPPTFWQ 60
           MAA APVAIGTRGT+GSLVKKEIDYFAKIE E      R  G +MASS  R SSPPTFW 
Sbjct: 17  MAATAPVAIGTRGTVGSLVKKEIDYFAKIEFE------RCSGNDMASSSRRSSSPPTFWH 76

Query: 61  SLMSWRRKTKLTSNRFVTKMCSTFDASRSNRMNKISGLSYTILQNDFHSLHM 112
           ++MSWRRK K   NRF+TK+CS FD S SNR+NKISG +YTILQNDF+SLHM
Sbjct: 77  TVMSWRRKKKRIGNRFITKICSAFDVSGSNRLNKISGFNYTILQNDFNSLHM 122

BLAST of CsaV3_1G010900 vs. ExPASy TrEMBL
Match: A0A2N9IT24 (Uncharacterized protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS55316 PE=4 SV=1)

HSP 1 Score: 107.1 bits (266), Expect = 5.9e-20
Identity = 58/109 (53.21%), Postives = 79/109 (72.48%), Query Frame = 0

Query: 1   MAAIAPVAIGTRGTIGSLVKKEIDYFAKIELETSISSQRSQGP--EMASSGCRSSPPTFW 60
           MAAIAPVAIGTRGT+GSLV+KEI+YF K+E++   SS++ QG   +MAS+  RS  P+ W
Sbjct: 16  MAAIAPVAIGTRGTVGSLVRKEIEYFKKVEIDQCGSSRKPQGQIVDMASTSGRSR-PSLW 75

Query: 61  QSLMSWRRKTKLTSNRFVTKMCSTFDASRSNRMNKISGLSYTILQNDFH 108
             +M+WRRK    S+  +  MCS  + S SNR+N+I G +Y IL+NDF+
Sbjct: 76  FLIMTWRRKKGRGSSGILPSMCSVVEVSESNRLNRIPGYNYRILKNDFN 123

BLAST of CsaV3_1G010900 vs. TAIR 10
Match: AT4G21780.1 (unknown protein; Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). )

HSP 1 Score: 59.7 bits (143), Expect = 2.1e-09
Identity = 42/109 (38.53%), Postives = 55/109 (50.46%), Query Frame = 0

Query: 5   APVAIGTRGTIGSLVKKEIDYFAKIE-LETSISSQRSQGPEMASS----GCRSSPPTFWQ 64
           AP+AIGTRGTIGSLV+KEIDYF            +R    E  ++       SS    W 
Sbjct: 3   APIAIGTRGTIGSLVRKEIDYFKNFSTCHPQFDPRRGNSEENKNTFKQRDRSSSRLGSWF 62

Query: 65  SLMSWRRKTKLT---SNRFVTKMCSTFDASRSNRMNKISGLSYTILQND 106
           S   WR+K + T     +F   MCS  + S  NR   + G +Y IL++D
Sbjct: 63  SKTKWRKKKRQTRGGGGKFFPSMCSAVEVSGENR---VPGFNYRILKSD 108

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
KGN64543.22.5e-65100.00hypothetical protein Csa_013063 [Cucumis sativus][more]
XP_011648422.16.4e-53100.00uncharacterized protein LOC105434455 [Cucumis sativus][more]
XP_016898893.11.0e-5094.59PREDICTED: uncharacterized protein LOC103485409 [Cucumis melo][more]
KAA0056869.12.3e-4293.81hypothetical protein E6C27_scaffold96G00380 [Cucumis melo var. makuwa] >TYJ99372... [more]
KAG7019678.13.2e-3665.65hypothetical protein SDJN02_18641, partial [Cucurbita argyrosperma subsp. argyro... [more]
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A0A0LX433.1e-53100.00Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G063600 PE=4 SV=1[more]
A0A1S4DSE94.9e-5194.59uncharacterized protein LOC103485409 OS=Cucumis melo OX=3656 GN=LOC103485409 PE=... [more]
A0A5A7UTL11.1e-4293.81Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold... [more]
A0A6J1CHB16.0e-3371.43uncharacterized protein LOC111010862 OS=Momordica charantia OX=3673 GN=LOC111010... [more]
A0A2N9IT245.9e-2053.21Uncharacterized protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS55316 PE=4 SV=1[more]
Match NameE-valueIdentityDescription
AT4G21780.12.1e-0938.53unknown protein; Has 30201 Blast hits to 17322 proteins in 780 species: Archae -... [more]
InterPro
Analysis Name: InterPro Annotations of Cucumber (Chinese Long) v3
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePANTHERPTHR35131EXPRESSED PROTEINcoord: 1..110
NoneNo IPR availablePANTHERPTHR35131:SF1EXPRESSED PROTEINcoord: 1..110

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CsaV3_1G010900.1CsaV3_1G010900.1mRNA