CsaV3_1G010810 (gene) Cucumber (Chinese Long) v3

Overview
NameCsaV3_1G010810
Typegene
OrganismCucumis sativus L. var. sativus cv. Chinese Long (Cucumber (Chinese Long) v3)
DescriptionDUF4228 domain-containing protein
Locationchr1: 6714555 .. 6715197 (+)
RNA-Seq ExpressionCsaV3_1G010810
SyntenyCsaV3_1G010810
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGACCTTCTTCAAGACAGATTCTTACGAGACTTTTAGGTATATATGTATTCTTTCTTTTTAAATATATTTTATTGGCCACCTAATTTTCTACCTGCGCCACGTAAGACCCCGTCGCGTCCACCGTGGCTCTTTCTCCGACGCGGTCTCTTTCCGTCCTTTCCCTTCCCCTTCCCCTTCCTTCTCTCTCTATTTAAACAAAAAATTTCCCCTAATTCCTAAATCCCAAAATCGAAATCATTTCGTAAACTCTCAAAAGAAGAAAAAGCAAGAAAGAAATCACAGTAATGGGCAACTGTTGCCGAAGCCAATCCTCTACGATGGTCTTCGCCGGTGATGATTGGGGCTCCTTCAGTTCCAAGCACGGGCGTGGTTGCGGCAGAAACGTTTCCGCTGCAACCTCCGGCGGCGATCCAGAGAAACATAGATTACTTGGAGAGAAGGAAGCGGGGTCGTGTTCGCAGCCGCTAGTGAAAATCAAGATGACGAAGAGAGAGCTTGAGGTTCTGGTGAAGAAGCTGGAGATGCAAGGATTGAGTCTAGAACAAGTTATTGGGCGGATGATGAAGGGTGAAGAAGAATTTGAAATCGAGCATCATCGATCATGGAGGCCTTCTCTTCAAAGCATTCCAGAGGATTACTGA

mRNA sequence

ATGACCTTCTTCAAGACAGATTCTTACGAGACTTTTAGCCAATCCTCTACGATGGTCTTCGCCGGTGATGATTGGGGCTCCTTCAGTTCCAAGCACGGGCGTGGTTGCGGCAGAAACGTTTCCGCTGCAACCTCCGGCGGCGATCCAGAGAAACATAGATTACTTGGAGAGAAGGAAGCGGGGTCGTGTTCGCAGCCGCTAGTGAAAATCAAGATGACGAAGAGAGAGCTTGAGGTTCTGGTGAAGAAGCTGGAGATGCAAGGATTGAGTCTAGAACAAGTTATTGGGCGGATGATGAAGGGTGAAGAAGAATTTGAAATCGAGCATCATCGATCATGGAGGCCTTCTCTTCAAAGCATTCCAGAGGATTACTGA

Coding sequence (CDS)

ATGACCTTCTTCAAGACAGATTCTTACGAGACTTTTAGCCAATCCTCTACGATGGTCTTCGCCGGTGATGATTGGGGCTCCTTCAGTTCCAAGCACGGGCGTGGTTGCGGCAGAAACGTTTCCGCTGCAACCTCCGGCGGCGATCCAGAGAAACATAGATTACTTGGAGAGAAGGAAGCGGGGTCGTGTTCGCAGCCGCTAGTGAAAATCAAGATGACGAAGAGAGAGCTTGAGGTTCTGGTGAAGAAGCTGGAGATGCAAGGATTGAGTCTAGAACAAGTTATTGGGCGGATGATGAAGGGTGAAGAAGAATTTGAAATCGAGCATCATCGATCATGGAGGCCTTCTCTTCAAAGCATTCCAGAGGATTACTGA

Protein sequence

MTFFKTDSYETFSQSSTMVFAGDDWGSFSSKHGRGCGRNVSAATSGGDPEKHRLLGEKEAGSCSQPLVKIKMTKRELEVLVKKLEMQGLSLEQVIGRMMKGEEEFEIEHHRSWRPSLQSIPEDY*
Homology
BLAST of CsaV3_1G010810 vs. NCBI nr
Match: KAE8652667.1 (hypothetical protein Csa_013180 [Cucumis sativus])

HSP 1 Score: 246.9 bits (629), Expect = 9.2e-62
Identity = 124/124 (100.00%), Postives = 124/124 (100.00%), Query Frame = 0

Query: 1   MTFFKTDSYETFSQSSTMVFAGDDWGSFSSKHGRGCGRNVSAATSGGDPEKHRLLGEKEA 60
           MTFFKTDSYETFSQSSTMVFAGDDWGSFSSKHGRGCGRNVSAATSGGDPEKHRLLGEKEA
Sbjct: 1   MTFFKTDSYETFSQSSTMVFAGDDWGSFSSKHGRGCGRNVSAATSGGDPEKHRLLGEKEA 60

Query: 61  GSCSQPLVKIKMTKRELEVLVKKLEMQGLSLEQVIGRMMKGEEEFEIEHHRSWRPSLQSI 120
           GSCSQPLVKIKMTKRELEVLVKKLEMQGLSLEQVIGRMMKGEEEFEIEHHRSWRPSLQSI
Sbjct: 61  GSCSQPLVKIKMTKRELEVLVKKLEMQGLSLEQVIGRMMKGEEEFEIEHHRSWRPSLQSI 120

Query: 121 PEDY 125
           PEDY
Sbjct: 121 PEDY 124

BLAST of CsaV3_1G010810 vs. NCBI nr
Match: XP_011652689.2 (uncharacterized protein LOC105435046 [Cucumis sativus])

HSP 1 Score: 215.7 bits (548), Expect = 2.3e-52
Identity = 107/107 (100.00%), Postives = 107/107 (100.00%), Query Frame = 0

Query: 18  MVFAGDDWGSFSSKHGRGCGRNVSAATSGGDPEKHRLLGEKEAGSCSQPLVKIKMTKREL 77
           MVFAGDDWGSFSSKHGRGCGRNVSAATSGGDPEKHRLLGEKEAGSCSQPLVKIKMTKREL
Sbjct: 1   MVFAGDDWGSFSSKHGRGCGRNVSAATSGGDPEKHRLLGEKEAGSCSQPLVKIKMTKREL 60

Query: 78  EVLVKKLEMQGLSLEQVIGRMMKGEEEFEIEHHRSWRPSLQSIPEDY 125
           EVLVKKLEMQGLSLEQVIGRMMKGEEEFEIEHHRSWRPSLQSIPEDY
Sbjct: 61  EVLVKKLEMQGLSLEQVIGRMMKGEEEFEIEHHRSWRPSLQSIPEDY 107

BLAST of CsaV3_1G010810 vs. NCBI nr
Match: KAA0056859.1 (DUF4228 domain-containing protein [Cucumis melo var. makuwa] >TYJ99362.1 DUF4228 domain-containing protein [Cucumis melo var. makuwa])

HSP 1 Score: 200.3 bits (508), Expect = 9.9e-48
Identity = 104/113 (92.04%), Postives = 107/113 (94.69%), Query Frame = 0

Query: 13  SQSSTMVFAGDDWGSFSSKHGRGCGRNVSAATSGGDPEKHRLLG-EKEAGSCSQPLVKIK 72
           SQSSTMVFAGDDWGSFSSKHGRGCG N  A TSGGDPEKHRLLG +KEA SCSQPLVKIK
Sbjct: 7   SQSSTMVFAGDDWGSFSSKHGRGCGGN--ATTSGGDPEKHRLLGDQKEAASCSQPLVKIK 66

Query: 73  MTKRELEVLVKKLEMQGLSLEQVIGRMMKGEEEFEIEHHRSWRPSLQSIPEDY 125
           MTKRELEVLVKKLEMQGL+LEQVIGRMMKGEEE+EIEHHRSWRPSLQSIPEDY
Sbjct: 67  MTKRELEVLVKKLEMQGLTLEQVIGRMMKGEEEYEIEHHRSWRPSLQSIPEDY 117

BLAST of CsaV3_1G010810 vs. NCBI nr
Match: XP_008446374.1 (PREDICTED: uncharacterized protein LOC103489132 [Cucumis melo])

HSP 1 Score: 192.6 bits (488), Expect = 2.1e-45
Identity = 99/108 (91.67%), Postives = 102/108 (94.44%), Query Frame = 0

Query: 18  MVFAGDDWGSFSSKHGRGCGRNVSAATSGGDPEKHRLLG-EKEAGSCSQPLVKIKMTKRE 77
           MVFAGDDWGSFSSKHGRGCG N  A TSGGDPEKHRLLG +KEA SCSQPLVKIKMTKRE
Sbjct: 1   MVFAGDDWGSFSSKHGRGCGGN--ATTSGGDPEKHRLLGDQKEAASCSQPLVKIKMTKRE 60

Query: 78  LEVLVKKLEMQGLSLEQVIGRMMKGEEEFEIEHHRSWRPSLQSIPEDY 125
           LEVLVKKLEMQGL+LEQVIGRMMKGEEE+EIEHHRSWRPSLQSIPEDY
Sbjct: 61  LEVLVKKLEMQGLTLEQVIGRMMKGEEEYEIEHHRSWRPSLQSIPEDY 106

BLAST of CsaV3_1G010810 vs. NCBI nr
Match: XP_038895954.1 (uncharacterized protein LOC120084128 [Benincasa hispida])

HSP 1 Score: 184.5 bits (467), Expect = 5.6e-43
Identity = 97/113 (85.84%), Postives = 102/113 (90.27%), Query Frame = 0

Query: 13  SQSSTMVFAGDDWGSFSSKHGRGCGRNVSAATSGGDPEKHRLLGEKEAGSCSQPLVKIKM 72
           SQSSTMVF GDDWGSFSSKHGRG G N  A TSGGDPEK+RLLGEKEA SCSQP VKIKM
Sbjct: 7   SQSSTMVFVGDDWGSFSSKHGRGRGGN--ATTSGGDPEKYRLLGEKEAASCSQPQVKIKM 66

Query: 73  TKRELEVLVKKLEMQGLSLEQVIGRM-MKGEEEFEIEHHRSWRPSLQSIPEDY 125
           +KRELE LVKKLEMQG+SLEQVIGRM M GE+EFE+EHHRSWRPSLQSIPEDY
Sbjct: 67  SKRELEDLVKKLEMQGMSLEQVIGRMVMNGEDEFEVEHHRSWRPSLQSIPEDY 117

BLAST of CsaV3_1G010810 vs. ExPASy TrEMBL
Match: A0A0A0LRL1 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G063490 PE=4 SV=1)

HSP 1 Score: 223.4 bits (568), Expect = 5.3e-55
Identity = 112/112 (100.00%), Postives = 112/112 (100.00%), Query Frame = 0

Query: 13  SQSSTMVFAGDDWGSFSSKHGRGCGRNVSAATSGGDPEKHRLLGEKEAGSCSQPLVKIKM 72
           SQSSTMVFAGDDWGSFSSKHGRGCGRNVSAATSGGDPEKHRLLGEKEAGSCSQPLVKIKM
Sbjct: 7   SQSSTMVFAGDDWGSFSSKHGRGCGRNVSAATSGGDPEKHRLLGEKEAGSCSQPLVKIKM 66

Query: 73  TKRELEVLVKKLEMQGLSLEQVIGRMMKGEEEFEIEHHRSWRPSLQSIPEDY 125
           TKRELEVLVKKLEMQGLSLEQVIGRMMKGEEEFEIEHHRSWRPSLQSIPEDY
Sbjct: 67  TKRELEVLVKKLEMQGLSLEQVIGRMMKGEEEFEIEHHRSWRPSLQSIPEDY 118

BLAST of CsaV3_1G010810 vs. ExPASy TrEMBL
Match: A0A5A7UTK3 (DUF4228 domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold248G005800 PE=4 SV=1)

HSP 1 Score: 200.3 bits (508), Expect = 4.8e-48
Identity = 104/113 (92.04%), Postives = 107/113 (94.69%), Query Frame = 0

Query: 13  SQSSTMVFAGDDWGSFSSKHGRGCGRNVSAATSGGDPEKHRLLG-EKEAGSCSQPLVKIK 72
           SQSSTMVFAGDDWGSFSSKHGRGCG N  A TSGGDPEKHRLLG +KEA SCSQPLVKIK
Sbjct: 7   SQSSTMVFAGDDWGSFSSKHGRGCGGN--ATTSGGDPEKHRLLGDQKEAASCSQPLVKIK 66

Query: 73  MTKRELEVLVKKLEMQGLSLEQVIGRMMKGEEEFEIEHHRSWRPSLQSIPEDY 125
           MTKRELEVLVKKLEMQGL+LEQVIGRMMKGEEE+EIEHHRSWRPSLQSIPEDY
Sbjct: 67  MTKRELEVLVKKLEMQGLTLEQVIGRMMKGEEEYEIEHHRSWRPSLQSIPEDY 117

BLAST of CsaV3_1G010810 vs. ExPASy TrEMBL
Match: A0A1S3BEX3 (uncharacterized protein LOC103489132 OS=Cucumis melo OX=3656 GN=LOC103489132 PE=4 SV=1)

HSP 1 Score: 192.6 bits (488), Expect = 1.0e-45
Identity = 99/108 (91.67%), Postives = 102/108 (94.44%), Query Frame = 0

Query: 18  MVFAGDDWGSFSSKHGRGCGRNVSAATSGGDPEKHRLLG-EKEAGSCSQPLVKIKMTKRE 77
           MVFAGDDWGSFSSKHGRGCG N  A TSGGDPEKHRLLG +KEA SCSQPLVKIKMTKRE
Sbjct: 1   MVFAGDDWGSFSSKHGRGCGGN--ATTSGGDPEKHRLLGDQKEAASCSQPLVKIKMTKRE 60

Query: 78  LEVLVKKLEMQGLSLEQVIGRMMKGEEEFEIEHHRSWRPSLQSIPEDY 125
           LEVLVKKLEMQGL+LEQVIGRMMKGEEE+EIEHHRSWRPSLQSIPEDY
Sbjct: 61  LEVLVKKLEMQGLTLEQVIGRMMKGEEEYEIEHHRSWRPSLQSIPEDY 106

BLAST of CsaV3_1G010810 vs. ExPASy TrEMBL
Match: A0A6J1EYG4 (uncharacterized protein LOC111440057 OS=Cucurbita moschata OX=3662 GN=LOC111440057 PE=4 SV=1)

HSP 1 Score: 170.2 bits (430), Expect = 5.3e-39
Identity = 88/110 (80.00%), Postives = 96/110 (87.27%), Query Frame = 0

Query: 13  SQSSTMVFAGDDWGSFSSKHGRGCGRNVSAATSGGDPEKHRLLGEKEAGSCSQPLVKIKM 72
           SQSSTM+FAGDDWGSFSSKHGRG G N  A+TS GDPEK+RLLGEK+  SC QP VKIKM
Sbjct: 7   SQSSTMIFAGDDWGSFSSKHGRGRGGN--ASTSSGDPEKYRLLGEKQTSSCPQPQVKIKM 66

Query: 73  TKRELEVLVKKLEMQGLSLEQVIGRMMKGEEEFEIEHHRSWRPSLQSIPE 123
           TKRELE LVK LE++GLSLEQVIGRMM  E+EF+ EHHRSWRPSLQSIPE
Sbjct: 67  TKRELEDLVKNLEIEGLSLEQVIGRMMNDEDEFQGEHHRSWRPSLQSIPE 114

BLAST of CsaV3_1G010810 vs. ExPASy TrEMBL
Match: A0A6J1KIA5 (uncharacterized protein LOC111495485 OS=Cucurbita maxima OX=3661 GN=LOC111495485 PE=4 SV=1)

HSP 1 Score: 169.1 bits (427), Expect = 1.2e-38
Identity = 89/110 (80.91%), Postives = 95/110 (86.36%), Query Frame = 0

Query: 13  SQSSTMVFAGDDWGSFSSKHGRGCGRNVSAATSGGDPEKHRLLGEKEAGSCSQPLVKIKM 72
           SQSSTMVFAGDDWGSFSSKHGRG G N SA  S GDPEK+RLLGEK+  SC QP VKIKM
Sbjct: 7   SQSSTMVFAGDDWGSFSSKHGRGRGGNASA--SRGDPEKYRLLGEKQTSSCPQPQVKIKM 66

Query: 73  TKRELEVLVKKLEMQGLSLEQVIGRMMKGEEEFEIEHHRSWRPSLQSIPE 123
           TKRELE LVK LE++GLSLEQVIGRMM  E+EF+ EHHRSWRPSLQSIPE
Sbjct: 67  TKRELEDLVKNLEIEGLSLEQVIGRMMNDEDEFQGEHHRSWRPSLQSIPE 114

BLAST of CsaV3_1G010810 vs. TAIR 10
Match: AT4G21920.1 (unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: N-terminal protein myristoylation; LOCATED IN: cellular_component unknown; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G20340.1); Has 40 Blast hits to 40 proteins in 10 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 40; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). )

HSP 1 Score: 51.6 bits (122), Expect = 5.3e-07
Identity = 37/124 (29.84%), Postives = 69/124 (55.65%), Query Frame = 0

Query: 13  SQSSTMVFAGDDWGSFSSKHGRGCGRNVSAATSGGDPEKHRLLGE-------KEAGSCSQ 72
           ++ +T  ++GDD GS++ +  R   R+        D EK  LLGE         + S  +
Sbjct: 8   TEKTTTSWSGDDNGSYNKRRRR--RRSTVVHDDNDDGEK--LLGETSNVTSTSSSSSSER 67

Query: 73  PLVKIKMTKRELEVLVKKLEMQGLSLEQVIGRMM-KGEEEFEI------EHHRSWRPSLQ 123
             +KI++TK+ELE L++ + ++ L+ E+++ +++ +G ++          HH+ W+P LQ
Sbjct: 68  REIKIRITKKELEDLMRNIGLKSLTAEEILSKLIFEGGDQIGFSAVDVTNHHQPWKPVLQ 127

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
KAE8652667.19.2e-62100.00hypothetical protein Csa_013180 [Cucumis sativus][more]
XP_011652689.22.3e-52100.00uncharacterized protein LOC105435046 [Cucumis sativus][more]
KAA0056859.19.9e-4892.04DUF4228 domain-containing protein [Cucumis melo var. makuwa] >TYJ99362.1 DUF4228... [more]
XP_008446374.12.1e-4591.67PREDICTED: uncharacterized protein LOC103489132 [Cucumis melo][more]
XP_038895954.15.6e-4385.84uncharacterized protein LOC120084128 [Benincasa hispida][more]
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A0A0LRL15.3e-55100.00Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G063490 PE=4 SV=1[more]
A0A5A7UTK34.8e-4892.04DUF4228 domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E567... [more]
A0A1S3BEX31.0e-4591.67uncharacterized protein LOC103489132 OS=Cucumis melo OX=3656 GN=LOC103489132 PE=... [more]
A0A6J1EYG45.3e-3980.00uncharacterized protein LOC111440057 OS=Cucurbita moschata OX=3662 GN=LOC1114400... [more]
A0A6J1KIA51.2e-3880.91uncharacterized protein LOC111495485 OS=Cucurbita maxima OX=3661 GN=LOC111495485... [more]
Match NameE-valueIdentityDescription
AT4G21920.15.3e-0729.84unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: N-termin... [more]
InterPro
Analysis Name: InterPro Annotations of Cucumber (Chinese Long) v3
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableCOILSCoilCoilcoord: 67..87
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 32..58
NoneNo IPR availablePANTHERPTHR33647:SF10DOMAIN PROTEIN, PUTATIVE-RELATEDcoord: 13..122
NoneNo IPR availablePANTHERPTHR33647OS01G0793900 PROTEINcoord: 13..122

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CsaV3_1G010810.1CsaV3_1G010810.1mRNA