CsaV3_1G010770 (gene) Cucumber (Chinese Long) v3

Overview


Name	CsaV3_1G010770
Type	gene
Organism	Cucumis sativus L. var. sativus cv. Chinese Long (Cucumber (Chinese Long) v3)
Description	pentatricopeptide repeat-containing protein At1g11710, mitochondrial
Location	chr1: 6682265 .. 6682861 (-)
RNA-Seq Expression	CsaV3_1G010770
Synteny	CsaV3_1G010770

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGACTGGGTTGCGACTTTCTCTGACTTATATTTCTTGTTTGCTATACTTGAAGGAAGTTGGGGTGTTTATTTTTTGCTTCACACAATTTAATGAACATTATATTGGTGTATTTAGAGGTTTACTTAGTTGTACTTCTCTTCGTTTTGTTTTGCTTGCAGATATTAGGGTATTTCATGAACTGGGTTTTTGGCATTCTATGATTTTTAGCCTCCTTTTTCTGAGGGGAAGTTCTGTTTTCAGACGAGGTTTTCATACGGGTAAGAAGCTTTTAAGTCCAAGCACCGAGGATATCATTTGTAAAGCAATTTGTGTTAATTTAAAACAGAGAAGATGGAAGTTCTTAGAGCAACTATCACCAAGTCTCACGAATTCGTTGGTCTGTCGTGTTATTCGCGAATTTCGCAACTCTCCACAGTTAGCTTTAGAATTCTACAACTGGGTTGAGGCAAGAGACAACTTTTCCCACTCATTAGAATCACGTTGTACCTTGGTTCACGTTTTAGTCAATTCCAGAAACTTTAATGATGCCTTGTCTATCATGGAGAGTTTAATACTTAAAATGGTAAGTCTCCATTGGAGGTTCTGGGAGGATTGA

mRNA sequence

ATGACTGGGTTGCGACTTTCTCTGACTTATATTTCTTGTTTGCTATACTTGAAGGAAGTTGGGGTGTTTATTTTTTGCTTCACACAATTTAATGAACATTATATTGGTGTATTTAGAGGTTTACTTAGTTGTACTTCTCTTCGTTTTGTTTTGCTTGCAGATATTAGGGTATTTCATGAACTGGGTTTTTGGCATTCTATGATTTTTAGCCTCCTTTTTCTGAGGGGAAGTTCTGTTTTCAGACGAGGTTTTCATACGGGTAAGAAGCTTTTAAGTCCAAGCACCGAGGATATCATTTGTAAAGCAATTTGTGTTAATTTAAAACAGAGAAGATGGAAGTTCTTAGAGCAACTATCACCAAGTCTCACGAATTCGTTGGTCTGTCGTGTTATTCGCGAATTTCGCAACTCTCCACAGTTAGCTTTAGAATTCTACAACTGGGTTGAGGCAAGAGACAACTTTTCCCACTCATTAGAATCACGTTGTACCTTGGTTCACGTTTTAGTCAATTCCAGAAACTTTAATGATGCCTTGTCTATCATGGAGAGTTTAATACTTAAAATGGTAAGTCTCCATTGGAGGTTCTGGGAGGATTGA

Coding sequence (CDS)

ATGACTGGGTTGCGACTTTCTCTGACTTATATTTCTTGTTTGCTATACTTGAAGGAAGTTGGGGTGTTTATTTTTTGCTTCACACAATTTAATGAACATTATATTGGTGTATTTAGAGGTTTACTTAGTTGTACTTCTCTTCGTTTTGTTTTGCTTGCAGATATTAGGGTATTTCATGAACTGGGTTTTTGGCATTCTATGATTTTTAGCCTCCTTTTTCTGAGGGGAAGTTCTGTTTTCAGACGAGGTTTTCATACGGGTAAGAAGCTTTTAAGTCCAAGCACCGAGGATATCATTTGTAAAGCAATTTGTGTTAATTTAAAACAGAGAAGATGGAAGTTCTTAGAGCAACTATCACCAAGTCTCACGAATTCGTTGGTCTGTCGTGTTATTCGCGAATTTCGCAACTCTCCACAGTTAGCTTTAGAATTCTACAACTGGGTTGAGGCAAGAGACAACTTTTCCCACTCATTAGAATCACGTTGTACCTTGGTTCACGTTTTAGTCAATTCCAGAAACTTTAATGATGCCTTGTCTATCATGGAGAGTTTAATACTTAAAATGGTAAGTCTCCATTGGAGGTTCTGGGAGGATTGA

Protein sequence

MTGLRLSLTYISCLLYLKEVGVFIFCFTQFNEHYIGVFRGLLSCTSLRFVLLADIRVFHELGFWHSMIFSLLFLRGSSVFRRGFHTGKKLLSPSTEDIICKAICVNLKQRRWKFLEQLSPSLTNSLVCRVIREFRNSPQLALEFYNWVEARDNFSHSLESRCTLVHVLVNSRNFNDALSIMESLILKMVSLHWRFWED*

Homology

[Close]

BLAST of CsaV3_1G010770 vs. NCBI nr
Match: KGN64520.1 (hypothetical protein Csa_013473 [Cucumis sativus])

HSP 1 Score: 404.8 bits (1039), Expect = 4.2e-109
Identity = 198/198 (100.00%), Postives = 198/198 (100.00%), Query Frame = 0


Query: 1   MTGLRLSLTYISCLLYLKEVGVFIFCFTQFNEHYIGVFRGLLSCTSLRFVLLADIRVFHE 60
           MTGLRLSLTYISCLLYLKEVGVFIFCFTQFNEHYIGVFRGLLSCTSLRFVLLADIRVFHE
Sbjct: 1   MTGLRLSLTYISCLLYLKEVGVFIFCFTQFNEHYIGVFRGLLSCTSLRFVLLADIRVFHE 60

Query: 61  LGFWHSMIFSLLFLRGSSVFRRGFHTGKKLLSPSTEDIICKAICVNLKQRRWKFLEQLSP 120
           LGFWHSMIFSLLFLRGSSVFRRGFHTGKKLLSPSTEDIICKAICVNLKQRRWKFLEQLSP
Sbjct: 61  LGFWHSMIFSLLFLRGSSVFRRGFHTGKKLLSPSTEDIICKAICVNLKQRRWKFLEQLSP 120

Query: 121 SLTNSLVCRVIREFRNSPQLALEFYNWVEARDNFSHSLESRCTLVHVLVNSRNFNDALSI 180
           SLTNSLVCRVIREFRNSPQLALEFYNWVEARDNFSHSLESRCTLVHVLVNSRNFNDALSI
Sbjct: 121 SLTNSLVCRVIREFRNSPQLALEFYNWVEARDNFSHSLESRCTLVHVLVNSRNFNDALSI 180

Query: 181 MESLILKMVSLHWRFWED 199
           MESLILKMVSLHWRFWED
Sbjct: 181 MESLILKMVSLHWRFWED 198

[Close]

BLAST of CsaV3_1G010770 vs. NCBI nr
Match: KAA0056855.1 (pentatricopeptide repeat-containing protein [Cucumis melo var. makuwa] >TYJ99358.1 pentatricopeptide repeat-containing protein [Cucumis melo var. makuwa])

HSP 1 Score: 250.4 bits (638), Expect = 1.3e-62
Identity = 122/133 (91.73%), Postives = 126/133 (94.74%), Query Frame = 0


Query: 55  IRVFHELGFWHSMIFSLLFLRGSSVFRRGFHTGKKLLSPSTEDIICKAICVNLKQRRWKF 114
           IR FHELGFWHSM+FS  FLRGS VFRRGF TGKKLLSPSTEDII KAICVNLKQRRWKF
Sbjct: 41  IREFHELGFWHSMVFSFTFLRGSFVFRRGFRTGKKLLSPSTEDIIYKAICVNLKQRRWKF 100

Query: 115 LEQLSPSLTNSLVCRVIREFRNSPQLALEFYNWVEARDNFSHSLESRCTLVHVLVNSRNF 174
           LEQ+SPSLTNSLVCRV+REFRNSPQLALEFYNWVEARDNFSHSLES CTLVHVLVNSRNF
Sbjct: 101 LEQVSPSLTNSLVCRVVREFRNSPQLALEFYNWVEARDNFSHSLESCCTLVHVLVNSRNF 160

Query: 175 NDALSIMESLILK 188
           NDALSIMESL+LK
Sbjct: 161 NDALSIMESLMLK 173

[Close]

BLAST of CsaV3_1G010770 vs. NCBI nr
Match: XP_031741894.1 (LOW QUALITY PROTEIN: pentatricopeptide repeat-containing protein At1g11710, mitochondrial [Cucumis sativus])

HSP 1 Score: 243.0 bits (619), Expect = 2.1e-60
Identity = 120/120 (100.00%), Postives = 120/120 (100.00%), Query Frame = 0


Query: 67  MIFSLLFLRGSSVFRRGFHTGKKLLSPSTEDIICKAICVNLKQRRWKFLEQLSPSLTNSL 126
           MIFSLLFLRGSSVFRRGFHTGKKLLSPSTEDIICKAICVNLKQRRWKFLEQLSPSLTNSL
Sbjct: 1   MIFSLLFLRGSSVFRRGFHTGKKLLSPSTEDIICKAICVNLKQRRWKFLEQLSPSLTNSL 60

Query: 127 VCRVIREFRNSPQLALEFYNWVEARDNFSHSLESRCTLVHVLVNSRNFNDALSIMESLIL 186
           VCRVIREFRNSPQLALEFYNWVEARDNFSHSLESRCTLVHVLVNSRNFNDALSIMESLIL
Sbjct: 61  VCRVIREFRNSPQLALEFYNWVEARDNFSHSLESRCTLVHVLVNSRNFNDALSIMESLIL 120

[Close]

BLAST of CsaV3_1G010770 vs. NCBI nr
Match: ADN34051.1 (pentatricopeptide repeat-containing protein [Cucumis melo subsp. melo])

HSP 1 Score: 225.7 bits (574), Expect = 3.5e-55
Identity = 111/121 (91.74%), Postives = 115/121 (95.04%), Query Frame = 0


Query: 67  MIFSLLFLRGSSVFRRGFHTGKKLLSPSTEDIICKAICVNLKQRRWKFLEQLSPSLTNSL 126
           M+FS  FLRGS VFRRGF TGKKLLSPSTEDII KAICVNLKQRRWKFLEQ+SPSLTNSL
Sbjct: 1   MVFSFTFLRGSFVFRRGFRTGKKLLSPSTEDIIYKAICVNLKQRRWKFLEQVSPSLTNSL 60

Query: 127 VCRVIREFRNSPQLALEFYNWVEARDNFSHSLESRCTLVHVLVNSRNFNDALSIMESLIL 186
           VCRV+REFRNSPQLALEFYNWVEARDNFSHSLES CTLVHVLVNSRNFNDALSIMESL+L
Sbjct: 61  VCRVVREFRNSPQLALEFYNWVEARDNFSHSLESCCTLVHVLVNSRNFNDALSIMESLML 120

Query: 187 K 188
           K
Sbjct: 121 K 121

[Close]

BLAST of CsaV3_1G010770 vs. NCBI nr
Match: XP_008441068.2 (PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing protein At1g11710, mitochondrial [Cucumis melo])

HSP 1 Score: 225.7 bits (574), Expect = 3.5e-55
Identity = 111/121 (91.74%), Postives = 115/121 (95.04%), Query Frame = 0


Query: 67  MIFSLLFLRGSSVFRRGFHTGKKLLSPSTEDIICKAICVNLKQRRWKFLEQLSPSLTNSL 126
           M+FS  FLRGS VFRRGF TGKKLLSPSTEDII KAICVNLKQRRWKFLEQ+SPSLTNSL
Sbjct: 1   MVFSFTFLRGSFVFRRGFRTGKKLLSPSTEDIIYKAICVNLKQRRWKFLEQVSPSLTNSL 60

Query: 127 VCRVIREFRNSPQLALEFYNWVEARDNFSHSLESRCTLVHVLVNSRNFNDALSIMESLIL 186
           VCRV+REFRNSPQLALEFYNWVEARDNFSHSLES CTLVHVLVNSRNFNDALSIMESL+L
Sbjct: 61  VCRVVREFRNSPQLALEFYNWVEARDNFSHSLESCCTLVHVLVNSRNFNDALSIMESLML 120

Query: 187 K 188
           K
Sbjct: 121 K 121

[Close]

BLAST of CsaV3_1G010770 vs. ExPASy Swiss-Prot
Match: Q9SAA6 (Pentatricopeptide repeat-containing protein At1g11710, mitochondrial OS=Arabidopsis thaliana OX=3702 GN=At1g11710 PE=2 SV=1)

HSP 1 Score: 125.9 bits (315), Expect = 5.0e-28
Identity = 62/121 (51.24%), Postives = 83/121 (68.60%), Query Frame = 0


Query: 68  IFSLLFLRGSSVFRRGFHTGKKLLSPSTEDIICKAICVNLKQRRWKFLEQLSPSLTNSLV 127
           +F  +F R +S   R FH  KK  +P  EDI+  A+C+NL+QRRW  L Q S SLTN L+
Sbjct: 1   MFGHVFSRRTSFLVRCFHVAKKFSNPEPEDILFSALCLNLRQRRWNTLHQFSSSLTNPLI 60

Query: 128 CRVIREFRNSPQLALEFYNWVEARDNFSHS---LESRCTLVHVLVNSRNFNDALSIMESL 186
            RV+REFR+SP+LALEFYNWV   +  + S    E+ C ++H+LV SR F+DALSIM +L
Sbjct: 61  SRVLREFRSSPKLALEFYNWVLRSNTVAKSENRFEASCVMIHLLVGSRRFDDALSIMANL 120

[Close]

BLAST of CsaV3_1G010770 vs. ExPASy Swiss-Prot
Match: Q9SZ10 (Pentatricopeptide repeat-containing protein At4g26680, mitochondrial OS=Arabidopsis thaliana OX=3702 GN=At4g26680 PE=3 SV=1)

HSP 1 Score: 55.8 bits (133), Expect = 6.3e-07
Identity = 28/81 (34.57%), Postives = 46/81 (56.79%), Query Frame = 0


Query: 106 NLKQRRWKFLEQLSPSLTNSLVCRVIREFRNSPQLALEFYNWVEARDNFSHSLESRCTLV 165
           +L Q  W  L +LS  L +  V  V+ + +    L+LEF+NW + R+  SHSLE+   ++
Sbjct: 63  HLIQSDWDKLNKLSDHLDSFRVKNVLLKIQKDYLLSLEFFNWAKTRNPGSHSLETHAIVL 122

Query: 166 HVLVNSRNFNDALSIMESLIL 187
           H L  +R F  A SI+  +++
Sbjct: 123 HTLTKNRKFKSAESILRDVLV 143

[Close]

BLAST of CsaV3_1G010770 vs. ExPASy Swiss-Prot
Match: P0C894 (Putative pentatricopeptide repeat-containing protein At2g02150 OS=Arabidopsis thaliana OX=3702 GN=At2g02150 PE=3 SV=1)

HSP 1 Score: 55.5 bits (132), Expect = 8.2e-07
Identity = 23/60 (38.33%), Postives = 39/60 (65.00%), Query Frame = 0


Query: 127 VCRVIREFRNSPQLALEFYNWVEARDNFSHSLESRCTLVHVLVNSRNFNDALSIMESLIL 186
           V RV+ E +  P+LA +F+ W   R+ F HS+ES C + H+L  +R + DA S+++ ++L
Sbjct: 111 VPRVLVELKEDPKLAFKFFKWSMTRNGFKHSVESYCIVAHILFCARMYYDANSVLKEMVL 170

[Close]

BLAST of CsaV3_1G010770 vs. ExPASy TrEMBL
Match: A0A0A0LRK7 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G062950 PE=4 SV=1)

HSP 1 Score: 404.8 bits (1039), Expect = 2.0e-109
Identity = 198/198 (100.00%), Postives = 198/198 (100.00%), Query Frame = 0


Query: 1   MTGLRLSLTYISCLLYLKEVGVFIFCFTQFNEHYIGVFRGLLSCTSLRFVLLADIRVFHE 60
           MTGLRLSLTYISCLLYLKEVGVFIFCFTQFNEHYIGVFRGLLSCTSLRFVLLADIRVFHE
Sbjct: 1   MTGLRLSLTYISCLLYLKEVGVFIFCFTQFNEHYIGVFRGLLSCTSLRFVLLADIRVFHE 60

Query: 61  LGFWHSMIFSLLFLRGSSVFRRGFHTGKKLLSPSTEDIICKAICVNLKQRRWKFLEQLSP 120
           LGFWHSMIFSLLFLRGSSVFRRGFHTGKKLLSPSTEDIICKAICVNLKQRRWKFLEQLSP
Sbjct: 61  LGFWHSMIFSLLFLRGSSVFRRGFHTGKKLLSPSTEDIICKAICVNLKQRRWKFLEQLSP 120

Query: 121 SLTNSLVCRVIREFRNSPQLALEFYNWVEARDNFSHSLESRCTLVHVLVNSRNFNDALSI 180
           SLTNSLVCRVIREFRNSPQLALEFYNWVEARDNFSHSLESRCTLVHVLVNSRNFNDALSI
Sbjct: 121 SLTNSLVCRVIREFRNSPQLALEFYNWVEARDNFSHSLESRCTLVHVLVNSRNFNDALSI 180

Query: 181 MESLILKMVSLHWRFWED 199
           MESLILKMVSLHWRFWED
Sbjct: 181 MESLILKMVSLHWRFWED 198

[Close]

BLAST of CsaV3_1G010770 vs. ExPASy TrEMBL
Match: A0A5D3BMH2 (Pentatricopeptide repeat-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold248G005760 PE=4 SV=1)

HSP 1 Score: 250.4 bits (638), Expect = 6.4e-63
Identity = 122/133 (91.73%), Postives = 126/133 (94.74%), Query Frame = 0


Query: 55  IRVFHELGFWHSMIFSLLFLRGSSVFRRGFHTGKKLLSPSTEDIICKAICVNLKQRRWKF 114
           IR FHELGFWHSM+FS  FLRGS VFRRGF TGKKLLSPSTEDII KAICVNLKQRRWKF
Sbjct: 41  IREFHELGFWHSMVFSFTFLRGSFVFRRGFRTGKKLLSPSTEDIIYKAICVNLKQRRWKF 100

Query: 115 LEQLSPSLTNSLVCRVIREFRNSPQLALEFYNWVEARDNFSHSLESRCTLVHVLVNSRNF 174
           LEQ+SPSLTNSLVCRV+REFRNSPQLALEFYNWVEARDNFSHSLES CTLVHVLVNSRNF
Sbjct: 101 LEQVSPSLTNSLVCRVVREFRNSPQLALEFYNWVEARDNFSHSLESCCTLVHVLVNSRNF 160

Query: 175 NDALSIMESLILK 188
           NDALSIMESL+LK
Sbjct: 161 NDALSIMESLMLK 173

[Close]

BLAST of CsaV3_1G010770 vs. ExPASy TrEMBL
Match: E5GC52 (Pentatricopeptide repeat-containing protein OS=Cucumis melo subsp. melo OX=412675 PE=4 SV=1)

HSP 1 Score: 225.7 bits (574), Expect = 1.7e-55
Identity = 111/121 (91.74%), Postives = 115/121 (95.04%), Query Frame = 0


Query: 67  MIFSLLFLRGSSVFRRGFHTGKKLLSPSTEDIICKAICVNLKQRRWKFLEQLSPSLTNSL 126
           M+FS  FLRGS VFRRGF TGKKLLSPSTEDII KAICVNLKQRRWKFLEQ+SPSLTNSL
Sbjct: 1   MVFSFTFLRGSFVFRRGFRTGKKLLSPSTEDIIYKAICVNLKQRRWKFLEQVSPSLTNSL 60

Query: 127 VCRVIREFRNSPQLALEFYNWVEARDNFSHSLESRCTLVHVLVNSRNFNDALSIMESLIL 186
           VCRV+REFRNSPQLALEFYNWVEARDNFSHSLES CTLVHVLVNSRNFNDALSIMESL+L
Sbjct: 61  VCRVVREFRNSPQLALEFYNWVEARDNFSHSLESCCTLVHVLVNSRNFNDALSIMESLML 120

Query: 187 K 188
           K
Sbjct: 121 K 121

[Close]

BLAST of CsaV3_1G010770 vs. ExPASy TrEMBL
Match: A0A1S3B385 (LOW QUALITY PROTEIN: pentatricopeptide repeat-containing protein At1g11710, mitochondrial OS=Cucumis melo OX=3656 GN=LOC103485289 PE=4 SV=1)

HSP 1 Score: 225.7 bits (574), Expect = 1.7e-55
Identity = 111/121 (91.74%), Postives = 115/121 (95.04%), Query Frame = 0


Query: 67  MIFSLLFLRGSSVFRRGFHTGKKLLSPSTEDIICKAICVNLKQRRWKFLEQLSPSLTNSL 126
           M+FS  FLRGS VFRRGF TGKKLLSPSTEDII KAICVNLKQRRWKFLEQ+SPSLTNSL
Sbjct: 1   MVFSFTFLRGSFVFRRGFRTGKKLLSPSTEDIIYKAICVNLKQRRWKFLEQVSPSLTNSL 60

Query: 127 VCRVIREFRNSPQLALEFYNWVEARDNFSHSLESRCTLVHVLVNSRNFNDALSIMESLIL 186
           VCRV+REFRNSPQLALEFYNWVEARDNFSHSLES CTLVHVLVNSRNFNDALSIMESL+L
Sbjct: 61  VCRVVREFRNSPQLALEFYNWVEARDNFSHSLESCCTLVHVLVNSRNFNDALSIMESLML 120

Query: 187 K 188
           K
Sbjct: 121 K 121

[Close]

BLAST of CsaV3_1G010770 vs. ExPASy TrEMBL
Match: A0A6J1ECJ9 (pentatricopeptide repeat-containing protein At1g11710, mitochondrial OS=Cucurbita moschata OX=3662 GN=LOC111431321 PE=4 SV=1)

HSP 1 Score: 218.0 bits (554), Expect = 3.5e-53
Identity = 106/121 (87.60%), Postives = 112/121 (92.56%), Query Frame = 0


Query: 67  MIFSLLFLRGSSVFRRGFHTGKKLLSPSTEDIICKAICVNLKQRRWKFLEQLSPSLTNSL 126
           MIFS +FLR S VF RGFHTGKKL SPSTEDIICKAICVNLK RRWKFLEQ+SPSLTNSL
Sbjct: 1   MIFSFIFLRRSCVFSRGFHTGKKLFSPSTEDIICKAICVNLKHRRWKFLEQVSPSLTNSL 60

Query: 127 VCRVIREFRNSPQLALEFYNWVEARDNFSHSLESRCTLVHVLVNSRNFNDALSIMESLIL 186
           VCRV+REFR SPQLALEFYNWVEARDN SHSLES CTLVHVLVNSRNF+DALSIM+SL+L
Sbjct: 61  VCRVVREFRTSPQLALEFYNWVEARDNISHSLESCCTLVHVLVNSRNFDDALSIMKSLML 120

Query: 187 K 188
           K
Sbjct: 121 K 121

[Close]

BLAST of CsaV3_1G010770 vs. TAIR 10
Match: AT1G11710.1 (Pentatricopeptide repeat (PPR) superfamily protein )

HSP 1 Score: 125.9 bits (315), Expect = 3.5e-29
Identity = 62/121 (51.24%), Postives = 83/121 (68.60%), Query Frame = 0


Query: 68  IFSLLFLRGSSVFRRGFHTGKKLLSPSTEDIICKAICVNLKQRRWKFLEQLSPSLTNSLV 127
           +F  +F R +S   R FH  KK  +P  EDI+  A+C+NL+QRRW  L Q S SLTN L+
Sbjct: 1   MFGHVFSRRTSFLVRCFHVAKKFSNPEPEDILFSALCLNLRQRRWNTLHQFSSSLTNPLI 60

Query: 128 CRVIREFRNSPQLALEFYNWVEARDNFSHS---LESRCTLVHVLVNSRNFNDALSIMESL 186
            RV+REFR+SP+LALEFYNWV   +  + S    E+ C ++H+LV SR F+DALSIM +L
Sbjct: 61  SRVLREFRSSPKLALEFYNWVLRSNTVAKSENRFEASCVMIHLLVGSRRFDDALSIMANL 120

[Close]

BLAST of CsaV3_1G010770 vs. TAIR 10
Match: AT4G26680.1 (Tetratricopeptide repeat (TPR)-like superfamily protein )

HSP 1 Score: 55.8 bits (133), Expect = 4.5e-08
Identity = 28/81 (34.57%), Postives = 46/81 (56.79%), Query Frame = 0


Query: 106 NLKQRRWKFLEQLSPSLTNSLVCRVIREFRNSPQLALEFYNWVEARDNFSHSLESRCTLV 165
           +L Q  W  L +LS  L +  V  V+ + +    L+LEF+NW + R+  SHSLE+   ++
Sbjct: 63  HLIQSDWDKLNKLSDHLDSFRVKNVLLKIQKDYLLSLEFFNWAKTRNPGSHSLETHAIVL 122

Query: 166 HVLVNSRNFNDALSIMESLIL 187
           H L  +R F  A SI+  +++
Sbjct: 123 HTLTKNRKFKSAESILRDVLV 143

[Close]

BLAST of CsaV3_1G010770 vs. TAIR 10
Match: AT4G26680.2 (Tetratricopeptide repeat (TPR)-like superfamily protein )

HSP 1 Score: 55.8 bits (133), Expect = 4.5e-08
Identity = 28/81 (34.57%), Postives = 46/81 (56.79%), Query Frame = 0


Query: 106 NLKQRRWKFLEQLSPSLTNSLVCRVIREFRNSPQLALEFYNWVEARDNFSHSLESRCTLV 165
           +L Q  W  L +LS  L +  V  V+ + +    L+LEF+NW + R+  SHSLE+   ++
Sbjct: 63  HLIQSDWDKLNKLSDHLDSFRVKNVLLKIQKDYLLSLEFFNWAKTRNPGSHSLETHAIVL 122

Query: 166 HVLVNSRNFNDALSIMESLIL 187
           H L  +R F  A SI+  +++
Sbjct: 123 HTLTKNRKFKSAESILRDVLV 143

[Close]

BLAST of CsaV3_1G010770 vs. TAIR 10
Match: AT2G02150.1 (Tetratricopeptide repeat (TPR)-like superfamily protein )

HSP 1 Score: 55.5 bits (132), Expect = 5.8e-08
Identity = 23/60 (38.33%), Postives = 39/60 (65.00%), Query Frame = 0


Query: 127 VCRVIREFRNSPQLALEFYNWVEARDNFSHSLESRCTLVHVLVNSRNFNDALSIMESLIL 186
           V RV+ E +  P+LA +F+ W   R+ F HS+ES C + H+L  +R + DA S+++ ++L
Sbjct: 111 VPRVLVELKEDPKLAFKFFKWSMTRNGFKHSVESYCIVAHILFCARMYYDANSVLKEMVL 170

[Close]

BLAST of CsaV3_1G010770 vs. TAIR 10
Match: AT5G61990.1 (Pentatricopeptide repeat (PPR) superfamily protein )

HSP 1 Score: 44.3 bits (103), Expect = 1.3e-04
Identity = 37/126 (29.37%), Postives = 58/126 (46.03%), Query Frame = 0


Query: 66  SMIF--SLLFLRGSSVFRRGFHTGKKLLSPSTEDIICKAICVNLKQRRWK---FLEQLSP 125
           SM+F    L  R + +  R F    + LS ++ +     I   LKQ  W+       LS 
Sbjct: 4   SMLFRKRTLVTRANFLLFRSFSVNVEKLSDASAE-----IAGILKQENWRDTLVSSNLSI 63

Query: 126 SLTNSLVCRVIREFR-NSPQLALEFYNWVEARDNFSHSLESRCTLVHVLVNSRNFNDALS 185
            +   +V  V+R  R + P   L F+NWV+++      L+S   L   L N  +F  ALS
Sbjct: 64  EINPEVVLSVLRSKRVDDPSKLLSFFNWVDSQKVTEQKLDSFSFLALDLCNFGSFEKALS 123

The following BLAST results are available for this feature:

BLAST of CsaV3_1G010770 vs. NCBI nr


Match Name	E-value	Identity	Description
KGN64520.1	4.2e-109	100.00	hypothetical protein Csa_013473 [Cucumis sativus]	[more]
KAA0056855.1	1.3e-62	91.73	pentatricopeptide repeat-containing protein [Cucumis melo var. makuwa] >TYJ99358...	[more]
XP_031741894.1	2.1e-60	100.00	LOW QUALITY PROTEIN: pentatricopeptide repeat-containing protein At1g11710, mito...	[more]
ADN34051.1	3.5e-55	91.74	pentatricopeptide repeat-containing protein [Cucumis melo subsp. melo]	[more]
XP_008441068.2	3.5e-55	91.74	PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing protein At1g...	[more]

BLAST of CsaV3_1G010770 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9SAA6	5.0e-28	51.24	Pentatricopeptide repeat-containing protein At1g11710, mitochondrial OS=Arabidop...	[more]
Q9SZ10	6.3e-07	34.57	Pentatricopeptide repeat-containing protein At4g26680, mitochondrial OS=Arabidop...	[more]
P0C894	8.2e-07	38.33	Putative pentatricopeptide repeat-containing protein At2g02150 OS=Arabidopsis th...	[more]

BLAST of CsaV3_1G010770 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0LRK7	2.0e-109	100.00	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G062950 PE=4 SV=1	[more]
A0A5D3BMH2	6.4e-63	91.73	Pentatricopeptide repeat-containing protein OS=Cucumis melo var. makuwa OX=11946...	[more]
E5GC52	1.7e-55	91.74	Pentatricopeptide repeat-containing protein OS=Cucumis melo subsp. melo OX=41267...	[more]
A0A1S3B385	1.7e-55	91.74	LOW QUALITY PROTEIN: pentatricopeptide repeat-containing protein At1g11710, mito...	[more]
A0A6J1ECJ9	3.5e-53	87.60	pentatricopeptide repeat-containing protein At1g11710, mitochondrial OS=Cucurbit...	[more]

BLAST of CsaV3_1G010770 vs. TAIR 10


Match Name	E-value	Identity	Description
AT1G11710.1	3.5e-29	51.24	Pentatricopeptide repeat (PPR) superfamily protein	[more]
AT4G26680.1	4.5e-08	34.57	Tetratricopeptide repeat (TPR)-like superfamily protein	[more]
AT4G26680.2	4.5e-08	34.57	Tetratricopeptide repeat (TPR)-like superfamily protein	[more]
AT2G02150.1	5.8e-08	38.33	Tetratricopeptide repeat (TPR)-like superfamily protein	[more]
AT5G61990.1	1.3e-04	29.37	Pentatricopeptide repeat (PPR) superfamily protein	[more]

InterPro

Analysis Name: InterPro Annotations of Cucumber (Chinese Long) v3
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR47942	TETRATRICOPEPTIDE REPEAT (TPR)-LIKE SUPERFAMILY PROTEIN-RELATED	coord: 73..188
None	No IPR available	PANTHER	PTHR47942:SF4	REPEAT-CONTAINING PROTEIN, PUTATIVE-RELATED	coord: 73..188

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CsaV3_1G010770.1	CsaV3_1G010770.1	mRNA