CsaV3_1G010040 (gene) Cucumber (Chinese Long) v3

Overview


Name	CsaV3_1G010040
Type	gene
Organism	Cucumis sativus L. var. sativus cv. Chinese Long (Cucumber (Chinese Long) v3)
Description	Unknown protein
Location	chr1: 6244468 .. 6244815 (+)
RNA-Seq Expression	CsaV3_1G010040
Synteny	CsaV3_1G010040

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGAAAGAGAAGAGTGAGAGAGATAAGAAAGAAGAAGGCAAGGAAGAAAAGGAATCAATCGCTCAAGAGGCGCAAAGCGACCACCTAAGGAATCAGACAGTGTTAGAATTCCTAGATGAGGAGGTAAATAGGGAGAAAATAGGTGGAAGTCCTTTGGATTTCCGAATGAATGCGGCTAGCAGCAAAAAGAAGGTACGGCACCGCGACGCTCAATGCTATGCCTGCGCCAGACATCTGCTTCAAGTTCGGAGTGTCACGGCACCCAAGAGCAACGTCGTGACGCTTGGCCAATTATGCAAAGACAAAGGCATTTTGCCTTTTCGGCGTCGTGGCATCGAAGCTTCATAG

mRNA sequence

ATGAAAGAGAAGAGTGAGAGAGATAAGAAAGAAGAAGGCAAGGAAGAAAAGGAATCAATCGCTCAAGAGGCGCAAAGCGACCACCTAAGGAATCAGACAGTGTTAGAATTCCTAGATGAGGAGGTAAATAGGGAGAAAATAGGTGGAAGTCCTTTGGATTTCCGAATGAATGCGGCTAGCAGCAAAAAGAAGGTACGGCACCGCGACGCTCAATGCTATGCCTGCGCCAGACATCTGCTTCAAGTTCGGAGTGTCACGGCACCCAAGAGCAACGTCGTGACGCTTGGCCAATTATGCAAAGACAAAGGCATTTTGCCTTTTCGGCGTCGTGGCATCGAAGCTTCATAG

Coding sequence (CDS)

ATGAAAGAGAAGAGTGAGAGAGATAAGAAAGAAGAAGGCAAGGAAGAAAAGGAATCAATCGCTCAAGAGGCGCAAAGCGACCACCTAAGGAATCAGACAGTGTTAGAATTCCTAGATGAGGAGGTAAATAGGGAGAAAATAGGTGGAAGTCCTTTGGATTTCCGAATGAATGCGGCTAGCAGCAAAAAGAAGGTACGGCACCGCGACGCTCAATGCTATGCCTGCGCCAGACATCTGCTTCAAGTTCGGAGTGTCACGGCACCCAAGAGCAACGTCGTGACGCTTGGCCAATTATGCAAAGACAAAGGCATTTTGCCTTTTCGGCGTCGTGGCATCGAAGCTTCATAG

Protein sequence

MKEKSERDKKEEGKEEKESIAQEAQSDHLRNQTVLEFLDEEVNREKIGGSPLDFRMNAASSKKKVRHRDAQCYACARHLLQVRSVTAPKSNVVTLGQLCKDKGILPFRRRGIEAS*

Homology

[Close]

BLAST of CsaV3_1G010040 vs. NCBI nr
Match: KAE8652637.1 (hypothetical protein Csa_013487 [Cucumis sativus])

HSP 1 Score: 220.3 bits (560), Expect = 8.6e-54
Identity = 115/115 (100.00%), Postives = 115/115 (100.00%), Query Frame = 0


Query: 1   MKEKSERDKKEEGKEEKESIAQEAQSDHLRNQTVLEFLDEEVNREKIGGSPLDFRMNAAS 60
           MKEKSERDKKEEGKEEKESIAQEAQSDHLRNQTVLEFLDEEVNREKIGGSPLDFRMNAAS
Sbjct: 1   MKEKSERDKKEEGKEEKESIAQEAQSDHLRNQTVLEFLDEEVNREKIGGSPLDFRMNAAS 60

Query: 61  SKKKVRHRDAQCYACARHLLQVRSVTAPKSNVVTLGQLCKDKGILPFRRRGIEAS 116
           SKKKVRHRDAQCYACARHLLQVRSVTAPKSNVVTLGQLCKDKGILPFRRRGIEAS
Sbjct: 61  SKKKVRHRDAQCYACARHLLQVRSVTAPKSNVVTLGQLCKDKGILPFRRRGIEAS 115

[Close]

BLAST of CsaV3_1G010040 vs. ExPASy TrEMBL
Match: A0A0A0LUJ4 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G051890 PE=4 SV=1)

HSP 1 Score: 220.3 bits (560), Expect = 4.2e-54
Identity = 115/115 (100.00%), Postives = 115/115 (100.00%), Query Frame = 0


Query: 1   MKEKSERDKKEEGKEEKESIAQEAQSDHLRNQTVLEFLDEEVNREKIGGSPLDFRMNAAS 60
           MKEKSERDKKEEGKEEKESIAQEAQSDHLRNQTVLEFLDEEVNREKIGGSPLDFRMNAAS
Sbjct: 14  MKEKSERDKKEEGKEEKESIAQEAQSDHLRNQTVLEFLDEEVNREKIGGSPLDFRMNAAS 73

Query: 61  SKKKVRHRDAQCYACARHLLQVRSVTAPKSNVVTLGQLCKDKGILPFRRRGIEAS 116
           SKKKVRHRDAQCYACARHLLQVRSVTAPKSNVVTLGQLCKDKGILPFRRRGIEAS
Sbjct: 74  SKKKVRHRDAQCYACARHLLQVRSVTAPKSNVVTLGQLCKDKGILPFRRRGIEAS 128

The following BLAST results are available for this feature:

BLAST of CsaV3_1G010040 vs. NCBI nr


Match Name	E-value	Identity	Description
KAE8652637.1	8.6e-54	100.00	hypothetical protein Csa_013487 [Cucumis sativus]	[more]

BLAST of CsaV3_1G010040 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of CsaV3_1G010040 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0LUJ4	4.2e-54	100.00	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G051890 PE=4 SV=1	[more]

BLAST of CsaV3_1G010040 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Cucumber (Chinese Long) v3
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..24
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..32

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CsaV3_1G010040.1	CsaV3_1G010040.1	mRNA