CsaV3_1G007280 (gene) Cucumber (Chinese Long) v3

Overview


Name	CsaV3_1G007280
Type	gene
Organism	Cucumis sativus L. var. sativus cv. Chinese Long (Cucumber (Chinese Long) v3)
Description	Unknown protein
Location	chr1: 4605690 .. 4605923 (+)
RNA-Seq Expression	CsaV3_1G007280
Synteny	CsaV3_1G007280

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGAGATTTGTGAAGCGAAGTCTTGTGAATGGACATCACAACAGAGCTCTCATCATAGAAAAAAGAACATCTCAATTTGAACACAGATCAAAAGTTGCATCAGAAGCAAAAGCAAAAGCCAAAAGCCAAAAAGTAAAGGCAAAGGCAGTAATTAATTACATCACCCACCCAACCCAACAACAACAAAATACAACAAGCTATGACAATTTATCATCCACCCCAAGTATTGACTAA

mRNA sequence

ATGAGATTTGTGAAGCGAAGTCTTGTGAATGGACATCACAACAGAGCTCTCATCATAGAAAAAAGAACATCTCAATTTGAACACAGATCAAAAGTTGCATCAGAAGCAAAAGCAAAAGCCAAAAGCCAAAAAGTAAAGGCAAAGGCAGTAATTAATTACATCACCCACCCAACCCAACAACAACAAAATACAACAAGCTATGACAATTTATCATCCACCCCAAGTATTGACTAA

Coding sequence (CDS)

ATGAGATTTGTGAAGCGAAGTCTTGTGAATGGACATCACAACAGAGCTCTCATCATAGAAAAAAGAACATCTCAATTTGAACACAGATCAAAAGTTGCATCAGAAGCAAAAGCAAAAGCCAAAAGCCAAAAAGTAAAGGCAAAGGCAGTAATTAATTACATCACCCACCCAACCCAACAACAACAAAATACAACAAGCTATGACAATTTATCATCCACCCCAAGTATTGACTAA

Protein sequence

MRFVKRSLVNGHHNRALIIEKRTSQFEHRSKVASEAKAKAKSQKVKAKAVINYITHPTQQQQNTTSYDNLSSTPSID*

Homology

[Close]

BLAST of CsaV3_1G007280 vs. NCBI nr
Match: KGN64186.1 (hypothetical protein Csa_014166 [Cucumis sativus])

HSP 1 Score: 145.6 bits (366), Expect = 1.8e-31
Identity = 77/77 (100.00%), Postives = 77/77 (100.00%), Query Frame = 0


Query: 1  MRFVKRSLVNGHHNRALIIEKRTSQFEHRSKVASEAKAKAKSQKVKAKAVINYITHPTQQ 60
          MRFVKRSLVNGHHNRALIIEKRTSQFEHRSKVASEAKAKAKSQKVKAKAVINYITHPTQQ
Sbjct: 1  MRFVKRSLVNGHHNRALIIEKRTSQFEHRSKVASEAKAKAKSQKVKAKAVINYITHPTQQ 60

Query: 61 QQNTTSYDNLSSTPSID 78
          QQNTTSYDNLSSTPSID
Sbjct: 61 QQNTTSYDNLSSTPSID 77

[Close]

BLAST of CsaV3_1G007280 vs. ExPASy TrEMBL
Match: A0A0A0LVW8 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G042935 PE=4 SV=1)

HSP 1 Score: 145.6 bits (366), Expect = 8.7e-32
Identity = 77/77 (100.00%), Postives = 77/77 (100.00%), Query Frame = 0


Query: 1  MRFVKRSLVNGHHNRALIIEKRTSQFEHRSKVASEAKAKAKSQKVKAKAVINYITHPTQQ 60
          MRFVKRSLVNGHHNRALIIEKRTSQFEHRSKVASEAKAKAKSQKVKAKAVINYITHPTQQ
Sbjct: 1  MRFVKRSLVNGHHNRALIIEKRTSQFEHRSKVASEAKAKAKSQKVKAKAVINYITHPTQQ 60

Query: 61 QQNTTSYDNLSSTPSID 78
          QQNTTSYDNLSSTPSID
Sbjct: 61 QQNTTSYDNLSSTPSID 77

The following BLAST results are available for this feature:

BLAST of CsaV3_1G007280 vs. NCBI nr


Match Name	E-value	Identity	Description
KGN64186.1	1.8e-31	100.00	hypothetical protein Csa_014166 [Cucumis sativus]	[more]

BLAST of CsaV3_1G007280 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of CsaV3_1G007280 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0LVW8	8.7e-32	100.00	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G042935 PE=4 SV=1	[more]

BLAST of CsaV3_1G007280 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Cucumber (Chinese Long) v3
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 54..77

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CsaV3_1G007280.1	CsaV3_1G007280.1	mRNA