CsaV3_1G006610 (gene) Cucumber (Chinese Long) v3

Overview


Name	CsaV3_1G006610
Type	gene
Organism	Cucumis sativus L. var. sativus cv. Chinese Long (Cucumber (Chinese Long) v3)
Description	Unknown protein
Location	chr1: 4248137 .. 4248416 (+)
RNA-Seq Expression	CsaV3_1G006610
Synteny	CsaV3_1G006610

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCAAGTGTTTGGCGAAACCTTATGAGGATTGATAGAGCCAAGGAGGCAAGTGTTAGGCAATGTAGAGTGAGAAACATATACAAACACATAAAACCTGACCATGAAAGCGCTGGACAACACCGTGACAAACATGCTCGCCTTGAAGTTATCAAACATGTCTTACAAACCTCATATTTCGGTTTCTTTTTTTTTACTTTCTTGACTCGGTTTGGTCACTAAACAAACGACTTCGTAGAGGTTTCTCTAGGCAAAGTCTCAAGGTTCAGGAATAAGGTAA

mRNA sequence

ATGGCAAGTGTTTGGCGAAACCTTATGAGGATTGATAGAGCCAAGGAGGCAAGTGTTAGGCAATGTAGAGTGAGAAACATATACAAACACATAAAACCTGACCATGAAAGCGCTGGACAACACCGTGACAAACATGCTCGCCTTGAAGCAAAGTCTCAAGGTTCAGGAATAAGGTAA

Coding sequence (CDS)

ATGGCAAGTGTTTGGCGAAACCTTATGAGGATTGATAGAGCCAAGGAGGCAAGTGTTAGGCAATGTAGAGTGAGAAACATATACAAACACATAAAACCTGACCATGAAAGCGCTGGACAACACCGTGACAAACATGCTCGCCTTGAAGCAAAGTCTCAAGGTTCAGGAATAAGGTAA

Protein sequence

MASVWRNLMRIDRAKEASVRQCRVRNIYKHIKPDHESAGQHRDKHARLEAKSQGSGIR*

Homology

[Close]

BLAST of CsaV3_1G006610 vs. NCBI nr
Match: KGN64118.1 (hypothetical protein Csa_013851 [Cucumis sativus])

HSP 1 Score: 118.6 bits (296), Expect = 1.8e-23
Identity = 58/58 (100.00%), Postives = 58/58 (100.00%), Query Frame = 0


Query: 1  MASVWRNLMRIDRAKEASVRQCRVRNIYKHIKPDHESAGQHRDKHARLEAKSQGSGIR 59
          MASVWRNLMRIDRAKEASVRQCRVRNIYKHIKPDHESAGQHRDKHARLEAKSQGSGIR
Sbjct: 1  MASVWRNLMRIDRAKEASVRQCRVRNIYKHIKPDHESAGQHRDKHARLEAKSQGSGIR 58

[Close]

BLAST of CsaV3_1G006610 vs. ExPASy TrEMBL
Match: A0A0A0LQS1 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G042300 PE=4 SV=1)

HSP 1 Score: 118.6 bits (296), Expect = 8.7e-24
Identity = 58/58 (100.00%), Postives = 58/58 (100.00%), Query Frame = 0


Query: 1  MASVWRNLMRIDRAKEASVRQCRVRNIYKHIKPDHESAGQHRDKHARLEAKSQGSGIR 59
          MASVWRNLMRIDRAKEASVRQCRVRNIYKHIKPDHESAGQHRDKHARLEAKSQGSGIR
Sbjct: 1  MASVWRNLMRIDRAKEASVRQCRVRNIYKHIKPDHESAGQHRDKHARLEAKSQGSGIR 58

The following BLAST results are available for this feature:

BLAST of CsaV3_1G006610 vs. NCBI nr


Match Name	E-value	Identity	Description
KGN64118.1	1.8e-23	100.00	hypothetical protein Csa_013851 [Cucumis sativus]	[more]

BLAST of CsaV3_1G006610 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of CsaV3_1G006610 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0LQS1	8.7e-24	100.00	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G042300 PE=4 SV=1	[more]

BLAST of CsaV3_1G006610 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Cucumber (Chinese Long) v3
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 30..58
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 30..51

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CsaV3_1G006610.1	CsaV3_1G006610.1	mRNA