CsaV3_1G005560 (gene) Cucumber (Chinese Long) v3

Overview
NameCsaV3_1G005560
Typegene
OrganismCucumis sativus L. var. sativus cv. Chinese Long (Cucumber (Chinese Long) v3)
DescriptionUnknown protein
Locationchr1: 3616888 .. 3617726 (+)
RNA-Seq ExpressionCsaV3_1G005560
SyntenyCsaV3_1G005560
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGCAATTAGGGCACAAGAATCTCCTCTCCTACATTTTGTTCTTCATTTTCTTTTTGGAGAATCATCGATTCCATTGTTTTATTGATTTTTGGCTCTCCCGCCCTATTTCTGCACCGGGAGATCCTTCTCAGGTTTTCCCATCTGCATTCCACCGGTTCCTTAACTAATTGTTTTCTGTAAAGCTACTCGTTTTCTCAGAAATAGATTAATCTTCTTGCTTGATCATCAAATTCGATTTGTGGAAATGTATATTTCTCTCTGTTAATTGATCGGGTCTGGTTAATTTATGGAAGGGATCTGTCCTTCCTGATTGCTGGGAGTTATTTTTTTAGTATGATGATGTGACTACAACAAACTCAATCTGCTCTTGTTGTAAGATTTAATTTTCAAATTTCTTCAATCCTTCCTTTGTCTTGTAATTCTTATTGGGTGTTTTTTTCTTTTGGCGAGTTATTCAAGCGAGTTTCACTTATTGTATTATCATTTTTTCCTTTTTGTTTTTGTTCATGAACACTGTATTTCTCCACTGTCATTGTTTCTGAAGCAATTTGCATGTTTTGGTTACTTTGACTCTCTGGGTGTTACAAAGTTTGCCTCGTTATATTACATTGTCCATTGTTTTATATCATTCCATCCGTGCCTTGTAGTATCTCGGAGACGGCTGATATTCATCTCCATTCTAACTGTTTCCTTGATGTTAGAATCATATTCGTTTTTATTTTTATTTTTGAAGCATGACGTGAAAGTGATAATAATGCTTCTTTGTGGTGCAGGGAGTTATTTCAACTTAATTGAAGTCAACTTCTTTTTCGGAAGTAGGAGAAGAAAAGGGAGCTGA

mRNA sequence

ATGCAATTAGGGCACAAGAATCTCCTCTCCTACATTTTGTTCTTCATTTTCTTTTTGGAGAATCATCGATTCCATTGTTTTATTGATTTTTGGCTCTCCCGCCCTATTTCTGCACCGGGAGATCCTTCTCAGTATGATGATGTGACTACAACAAACTCAATCTGCTCTTGTTGGAGTTATTTCAACTTAATTGAAGTCAACTTCTTTTTCGGAAGTAGGAGAAGAAAAGGGAGCTGA

Coding sequence (CDS)

ATGCAATTAGGGCACAAGAATCTCCTCTCCTACATTTTGTTCTTCATTTTCTTTTTGGAGAATCATCGATTCCATTGTTTTATTGATTTTTGGCTCTCCCGCCCTATTTCTGCACCGGGAGATCCTTCTCAGTATGATGATGTGACTACAACAAACTCAATCTGCTCTTGTTGGAGTTATTTCAACTTAATTGAAGTCAACTTCTTTTTCGGAAGTAGGAGAAGAAAAGGGAGCTGA

Protein sequence

MQLGHKNLLSYILFFIFFLENHRFHCFIDFWLSRPISAPGDPSQYDDVTTTNSICSCWSYFNLIEVNFFFGSRRRKGS*
Homology
[Close]
BLAST of CsaV3_1G005560 vs. NCBI nr
Match: KGN64008.1 (hypothetical protein Csa_014375 [Cucumis sativus])

HSP 1 Score: 170.2 bits (430), Expect = 6.9e-39
Identity = 78/78 (100.00%), Postives = 78/78 (100.00%), Query Frame = 0 

Query: 1  MQLGHKNLLSYILFFIFFLENHRFHCFIDFWLSRPISAPGDPSQYDDVTTTNSICSCWSY 60
          MQLGHKNLLSYILFFIFFLENHRFHCFIDFWLSRPISAPGDPSQYDDVTTTNSICSCWSY
Sbjct: 1  MQLGHKNLLSYILFFIFFLENHRFHCFIDFWLSRPISAPGDPSQYDDVTTTNSICSCWSY 60

Query: 61 FNLIEVNFFFGSRRRKGS 79
          FNLIEVNFFFGSRRRKGS
Sbjct: 61 FNLIEVNFFFGSRRRKGS 78

[Close]
BLAST of CsaV3_1G005560 vs. ExPASy TrEMBL
Match: A0A0A0LQI4 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G033270 PE=4 SV=1)

HSP 1 Score: 170.2 bits (430), Expect = 3.4e-39
Identity = 78/78 (100.00%), Postives = 78/78 (100.00%), Query Frame = 0 

Query: 1  MQLGHKNLLSYILFFIFFLENHRFHCFIDFWLSRPISAPGDPSQYDDVTTTNSICSCWSY 60
          MQLGHKNLLSYILFFIFFLENHRFHCFIDFWLSRPISAPGDPSQYDDVTTTNSICSCWSY
Sbjct: 1  MQLGHKNLLSYILFFIFFLENHRFHCFIDFWLSRPISAPGDPSQYDDVTTTNSICSCWSY 60

Query: 61 FNLIEVNFFFGSRRRKGS 79
          FNLIEVNFFFGSRRRKGS
Sbjct: 61 FNLIEVNFFFGSRRRKGS 78

The following BLAST results are available for this feature:
BLAST of CsaV3_1G005560 vs. NCBI nr
Match NameE-valueIdentityDescription
KGN64008.16.9e-39100.00hypothetical protein Csa_014375 [Cucumis sativus][more]
BLAST of CsaV3_1G005560 vs. NCBI nr
Match NameE-valueIdentityDescription
BLAST of CsaV3_1G005560 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A0A0LQI43.4e-39100.00Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G033270 PE=4 SV=1[more]
BLAST of CsaV3_1G005560 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CsaV3_1G005560.1CsaV3_1G005560.1mRNA