CsaV3_1G005220 (gene) Cucumber (Chinese Long) v3

Overview


Name	CsaV3_1G005220
Type	gene
Organism	Cucumis sativus L. var. sativus cv. Chinese Long (Cucumber (Chinese Long) v3)
Description	Glycine-rich RNA-binding protein 4
Location	chr1: 3459467 .. 3464102 (+)
RNA-Seq Expression	CsaV3_1G005220
Synteny	CsaV3_1G005220

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

TAAGTACCAAATAATTTTACAAAAATTAGACATAATTATGAGTGAAAACTAATTCGAATTTATTAAGAAAAAAAAAAAGGAAAAAAACTTTATATAATTTGTTATTGTGATGCGGTGTCGTATTATAGATCTGGACTAAGAAAACTGGGGTACAATCCGCTAATATTCCGGATTGCGAATTCCTCGAAATCAAACTGTTTAGCGGCTTTGGGGTGGAACGCCGGAGAAGACGAAAATGACCGCCGGCTTGTCTTTCACGGTCACAGCTGCTCCGAAACCATTCTTTCAGCTTCAGACTACTCATCACAGCAGTATCAGTTCAACCGAGACGCGTATGCGAATTCGAAGCATTCAATCCAAATTGGCTTACAGTTCTACGCCACTCCCCTTCTTCTCTGCGAGGAAGACTCAATCAATTTCAGATTCACTGCTCTTTTCAGTAGCGTGTGTCTCTTCTTCACCTTCATCTTCTTCTTCTCCCAGAAGATACACACCTTCAACCAGGCTCTACATCAGTGGTTGGTTTTCTTTCTCTCAGTTGTGTATTTAGTCATAATTTGGCTGGTTATGTATGTGGAGACAATTTGGATTGCTTGAATCATTACAACTTCACGCGTGCAGGACTTTCGTTCCGGACCACTGAAGAGAGCTTGCGAAATGCTTTCAAAAGCTTTGGCCAACTTGTAGAAGGTCGTCGAGTAGTAGTTCTCTTGTGCATTCTGAACGTTCAATTATGTTTCAATTGTCGATATCTGGCGCTAACTGTTATCATTTGTTATTAAATTCAGTCAATTTGGTGATGGATAGACTAGCCAATAGACCAAGAGGATTTGCCTTCCTCCGTTATGCTTCAGAAGAGGAATCTCAAAAAGCTATCGAAGGAATGCACGGCAAGGTAATTTACGTGCTCTATCTTTGCAATTGATACTCTGTCTATTTTCTTCCAAACGAGTGTAATTGTTTTCTTCTGTGTTATGCATTATCCTCTTAATCGCCAAAATCCACTTCAAATGCCCATTTCTCTCATTCACTTCGATTTTGGTAATGCATACGATTAGCCTTCTTGAATTATATCTGATTTACTCAGCAACTCTAGCTGAAGACGGTAAATCCATCTATAAGAACTCTAAATAACTATAATCCACTCCAGAATTTGCGAGGTTTAATTCCTTTAACTGCCAGAGCAAGCCTTTCAGTATTTATGATATAAAATCACAGACATTATAACACACCAGTTTAGGCTTTACACAAAGGGGCAATAAACCTTGAAGTTCTCTATAATTTTAGCTAGAGAATAGATATCTAGAAAGGAAAAGCTGGATGCGATAGATTTAAAGTCGCATTTAGAGGACATAAGGTAGCGTCCATCCAGATCCAGTTATTCTTAATCATTGCTTCCTTTCCGAACTGTGGAACATTATAACTGTTATACCTTCAAACGAAAAAAAATGAACTTCAATAGATAGTTAATAACTGAATGTTCATATAAGCATTAGGTATTCATAACCTTGTTTTATTGCATTGGTGAACGTGTATATCAGCAGATAGATTACTTGTCATGGTTAGATTAACATTGTTAGGAGGAACAAAGCCAAGTGACTGAACCTGCCCTCGCAGTTTCTGTTTTACCACATACAAAACCTTGGATGGAACTCACTAGAGCTTTGCAAATGATCTAAATATTGAATAGACATTGCCTCTTCCCCTGTCTCCTGAGCCAAGTGAAACTTACCAGCAGACAGTTACTAATTCCCTCCCTCATCCTTTCCTCCTTAAAGCTTTCATATTAGCGATCACTTACCATCGAAACTAAATAGTTCCAACTAACTTCGGCTAAGGGCAGAAGTGTTTAAAGCAAAACATTAGTGTTTTTAAAATTTCACAATGATTTTTATCATTTGACTACATACTAAGAAAATTTTGAAATATGTTTTTGGGTAAATTTTCATCTTTCTAAAAGTGATTCCAACTCAATACCATTGGTGGTCATTCTCGCCTTTGCCCTTCATATTATAAGTAAACCATAGGGGAGGCTTAGGAGGCCTATCAAATACCGCAACCAAAATATAAAATGTTTCTTGAATATTCGGCATGCTCCACATAACTGATTGTAATAAAATTCAGTACAATTTAATATGGACTTGGAAGAGAACTGATTAAAGATGGTTAAACCCTAATTTGTGGCTTGACTTGTCATAGAACGATCCCTGTTCAATGAACTTGTTATATGAAAGGATTTATTTGTAATTAAAGTTTCAAACTCAAACCACACTATATTCAATATTCACGTTTATAGCTAAAAATTTGTGTATCCGAGTGCACAGTACCACTGTTAAATTTAAGTGTACTTTTTGGCCTCGAGGTTTCCTCCAATTTATAGTGACAGCTACGTTTGTCGAAGTTAACAGTCAAAGAACTTATTCCCAGGTTTATTTGATGGATATACCCTTCCCACCTCTTCTCATCGGGAAACATGAATTGATATGATATTCTCTTCTCGGATTCCATGGATAAAATTCCGATGCTTCCTAAAGAGAAAAAGGCTACTTTTGAAATCAAGCTTGTAGCTGGGAGGGTCTGATCTATGCCAACCAATTATAGAAGATTTTTGTTTTTATTTATTTATAGTAAATAAAAAGAAAAGAGAATCTGTGATGATCTTGTTGTCTTATCTTTTTTGGTGCATCTAATTTTCAATTACAGCAGCATCATGAACTAATAGGGGAAACTTTGATTTAGTTTCTGGATGGCAGGGTGATTTTTGTGGAAGTTGCAAAGTCCAGATCGGAGCTACGCCAAGGCCTTGAAGAAAACTCTAGTTAATGCATGCTTTAGTATATAGGCATCATTGTACCCCCCAAAGTTCAGATTCATTTTTATAAGAGCCCAAACATATTTTAGGAATATATATATAACTAAGGGTTGGGCTCTGCATTGTTATTGGTTTGCGAAACCTTGATCTTGACTATATGATTATAATATAGTCTTAGTGTATTTCAGGAGCAGTGTTCTGTCTTGAAATTAAGTGGTATTAATATTGGGGATTGGTACAGTGGATAACCTAACCAAACATGAACTTCTAAGGCATGGTCTATGGTCAAGGTCCACAGGTTGTAACACGTATATGTGAATGCTTAAATCATGAGAAGCGCAGATTTTTAGAAATATTAAGAAGAGGACTTTTAGGGCTGTTGATTGATACTAGACATGTACCCGTGAGAGAAAGTGTGGGACATAGTTGAAACAAACAAGAAGGGCCCCTTCCCGTTCCGTCCGTGCTGAATTCTGTCGTCAGGAACAAAGATATAATTAAGCCAAGGACAAGTCAACGATTCCCCTTGGAATCACAGGCACCTATAGAATTTTGAAGTTTATTTAAACTAATAAGTTTCCTCGGTTTTTGTACTTAGGTTGTTCATGAA

mRNA sequence

ATGACCGCCGGCTTGTCTTTCACGGTCACAGCTGCTCCGAAACCATTCTTTCAGCTTCAGACTACTCATCACAGCAGTATCAGTTCAACCGAGACGCGTATGCGAATTCGAAGCATTCAATCCAAATTGGCTTACAGTTCTACGCCACTCCCCTTCTTCTCTGCGAGGAAGACTCAATCAATTTCAGATTCACTGCTCTTTTCAGTAGCGTGTGTCTCTTCTTCACCTTCATCTTCTTCTTCTCCCAGAAGATACACACCTTCAACCAGGCTCTACATCAGTGGACTTTCGTTCCGGACCACTGAAGAGAGCTTGCGAAATGCTTTCAAAAGCTTTGGCCAACTTGTAGAAGTCAATTTGGTGATGGATAGACTAGCCAATAGACCAAGAGGATTTGCCTTCCTCCGTTATGCTTCAGAAGAGGAATCTCAAAAAGCTATCGAAGGAATGCACGGCAAGGGTGATTTTTGTGGAAGTTGCAAAGTCCAGATCGGAGCTACGCCAAGGCCTTGA

Coding sequence (CDS)

ATGACCGCCGGCTTGTCTTTCACGGTCACAGCTGCTCCGAAACCATTCTTTCAGCTTCAGACTACTCATCACAGCAGTATCAGTTCAACCGAGACGCGTATGCGAATTCGAAGCATTCAATCCAAATTGGCTTACAGTTCTACGCCACTCCCCTTCTTCTCTGCGAGGAAGACTCAATCAATTTCAGATTCACTGCTCTTTTCAGTAGCGTGTGTCTCTTCTTCACCTTCATCTTCTTCTTCTCCCAGAAGATACACACCTTCAACCAGGCTCTACATCAGTGGACTTTCGTTCCGGACCACTGAAGAGAGCTTGCGAAATGCTTTCAAAAGCTTTGGCCAACTTGTAGAAGTCAATTTGGTGATGGATAGACTAGCCAATAGACCAAGAGGATTTGCCTTCCTCCGTTATGCTTCAGAAGAGGAATCTCAAAAAGCTATCGAAGGAATGCACGGCAAGGGTGATTTTTGTGGAAGTTGCAAAGTCCAGATCGGAGCTACGCCAAGGCCTTGA

Protein sequence

MTAGLSFTVTAAPKPFFQLQTTHHSSISSTETRMRIRSIQSKLAYSSTPLPFFSARKTQSISDSLLFSVACVSSSPSSSSSPRRYTPSTRLYISGLSFRTTEESLRNAFKSFGQLVEVNLVMDRLANRPRGFAFLRYASEEESQKAIEGMHGKGDFCGSCKVQIGATPRP*

Homology

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BLAST of CsaV3_1G005220 vs. NCBI nr
Match: XP_031743837.1 (organelle RRM domain-containing protein 6, chloroplastic isoform X3 [Cucumis sativus] >KAE8652500.1 hypothetical protein Csa_013675 [Cucumis sativus])

HSP 1 Score: 327.4 bits (838), Expect = 7.3e-86
Identity = 170/170 (100.00%), Postives = 170/170 (100.00%), Query Frame = 0


Query: 1   MTAGLSFTVTAAPKPFFQLQTTHHSSISSTETRMRIRSIQSKLAYSSTPLPFFSARKTQS 60
           MTAGLSFTVTAAPKPFFQLQTTHHSSISSTETRMRIRSIQSKLAYSSTPLPFFSARKTQS
Sbjct: 1   MTAGLSFTVTAAPKPFFQLQTTHHSSISSTETRMRIRSIQSKLAYSSTPLPFFSARKTQS 60

Query: 61  ISDSLLFSVACVSSSPSSSSSPRRYTPSTRLYISGLSFRTTEESLRNAFKSFGQLVEVNL 120
           ISDSLLFSVACVSSSPSSSSSPRRYTPSTRLYISGLSFRTTEESLRNAFKSFGQLVEVNL
Sbjct: 61  ISDSLLFSVACVSSSPSSSSSPRRYTPSTRLYISGLSFRTTEESLRNAFKSFGQLVEVNL 120

Query: 121 VMDRLANRPRGFAFLRYASEEESQKAIEGMHGKGDFCGSCKVQIGATPRP 171
           VMDRLANRPRGFAFLRYASEEESQKAIEGMHGKGDFCGSCKVQIGATPRP
Sbjct: 121 VMDRLANRPRGFAFLRYASEEESQKAIEGMHGKGDFCGSCKVQIGATPRP 170

[Close]

BLAST of CsaV3_1G005220 vs. NCBI nr
Match: XP_011649648.1 (organelle RRM domain-containing protein 6, chloroplastic isoform X1 [Cucumis sativus])

HSP 1 Score: 288.5 bits (737), Expect = 3.8e-74
Identity = 153/153 (100.00%), Postives = 153/153 (100.00%), Query Frame = 0


Query: 1   MTAGLSFTVTAAPKPFFQLQTTHHSSISSTETRMRIRSIQSKLAYSSTPLPFFSARKTQS 60
           MTAGLSFTVTAAPKPFFQLQTTHHSSISSTETRMRIRSIQSKLAYSSTPLPFFSARKTQS
Sbjct: 1   MTAGLSFTVTAAPKPFFQLQTTHHSSISSTETRMRIRSIQSKLAYSSTPLPFFSARKTQS 60

Query: 61  ISDSLLFSVACVSSSPSSSSSPRRYTPSTRLYISGLSFRTTEESLRNAFKSFGQLVEVNL 120
           ISDSLLFSVACVSSSPSSSSSPRRYTPSTRLYISGLSFRTTEESLRNAFKSFGQLVEVNL
Sbjct: 61  ISDSLLFSVACVSSSPSSSSSPRRYTPSTRLYISGLSFRTTEESLRNAFKSFGQLVEVNL 120

Query: 121 VMDRLANRPRGFAFLRYASEEESQKAIEGMHGK 154
           VMDRLANRPRGFAFLRYASEEESQKAIEGMHGK
Sbjct: 121 VMDRLANRPRGFAFLRYASEEESQKAIEGMHGK 153

[Close]

BLAST of CsaV3_1G005220 vs. NCBI nr
Match: XP_011649654.1 (organelle RRM domain-containing protein 6, chloroplastic isoform X2 [Cucumis sativus])

HSP 1 Score: 288.5 bits (737), Expect = 3.8e-74
Identity = 153/153 (100.00%), Postives = 153/153 (100.00%), Query Frame = 0


Query: 1   MTAGLSFTVTAAPKPFFQLQTTHHSSISSTETRMRIRSIQSKLAYSSTPLPFFSARKTQS 60
           MTAGLSFTVTAAPKPFFQLQTTHHSSISSTETRMRIRSIQSKLAYSSTPLPFFSARKTQS
Sbjct: 1   MTAGLSFTVTAAPKPFFQLQTTHHSSISSTETRMRIRSIQSKLAYSSTPLPFFSARKTQS 60

Query: 61  ISDSLLFSVACVSSSPSSSSSPRRYTPSTRLYISGLSFRTTEESLRNAFKSFGQLVEVNL 120
           ISDSLLFSVACVSSSPSSSSSPRRYTPSTRLYISGLSFRTTEESLRNAFKSFGQLVEVNL
Sbjct: 61  ISDSLLFSVACVSSSPSSSSSPRRYTPSTRLYISGLSFRTTEESLRNAFKSFGQLVEVNL 120

Query: 121 VMDRLANRPRGFAFLRYASEEESQKAIEGMHGK 154
           VMDRLANRPRGFAFLRYASEEESQKAIEGMHGK
Sbjct: 121 VMDRLANRPRGFAFLRYASEEESQKAIEGMHGK 153

[Close]

BLAST of CsaV3_1G005220 vs. NCBI nr
Match: KAA0036062.1 (glycine-rich RNA-binding protein 4 [Cucumis melo var. makuwa])

HSP 1 Score: 260.0 bits (663), Expect = 1.4e-65
Identity = 137/153 (89.54%), Postives = 144/153 (94.12%), Query Frame = 0


Query: 1   MTAGLSFTVTAAPKPFFQLQTTHHSSISSTETRMRIRSIQSKLAYSSTPLPFFSARKTQS 60
           MTAGLSFTVTAAPKPFFQLQTTHH++I STET MR +S QSKLAYSSTPLPFFSARKTQS
Sbjct: 1   MTAGLSFTVTAAPKPFFQLQTTHHNNIRSTETHMRFQSFQSKLAYSSTPLPFFSARKTQS 60

Query: 61  ISDSLLFSVACVSSSPSSSSSPRRYTPSTRLYISGLSFRTTEESLRNAFKSFGQLVEVNL 120
           IS+S LFSVACVSSSP    SPRRY+PSTRLY+SGLSFRTTEESLRNAFKSFGQLVEVNL
Sbjct: 61  ISESPLFSVACVSSSP----SPRRYSPSTRLYVSGLSFRTTEESLRNAFKSFGQLVEVNL 120

Query: 121 VMDRLANRPRGFAFLRYASEEESQKAIEGMHGK 154
           VMDR+ANRPRGFAFLRYASEEESQKAIEGMHGK
Sbjct: 121 VMDRVANRPRGFAFLRYASEEESQKAIEGMHGK 149

[Close]

BLAST of CsaV3_1G005220 vs. NCBI nr
Match: XP_008439477.1 (PREDICTED: glycine-rich RNA-binding protein 4, mitochondrial-like isoform X1 [Cucumis melo])

HSP 1 Score: 257.3 bits (656), Expect = 9.3e-65
Identity = 136/153 (88.89%), Postives = 143/153 (93.46%), Query Frame = 0


Query: 1   MTAGLSFTVTAAPKPFFQLQTTHHSSISSTETRMRIRSIQSKLAYSSTPLPFFSARKTQS 60
           MTAGLSFTVTAAPKPFF LQTTHH++I STET MR +S QSKLAYSSTPLPFFSARKTQS
Sbjct: 1   MTAGLSFTVTAAPKPFFLLQTTHHNNIRSTETHMRFQSFQSKLAYSSTPLPFFSARKTQS 60

Query: 61  ISDSLLFSVACVSSSPSSSSSPRRYTPSTRLYISGLSFRTTEESLRNAFKSFGQLVEVNL 120
           IS+S LFSVACVSSSP    SPRRY+PSTRLY+SGLSFRTTEESLRNAFKSFGQLVEVNL
Sbjct: 61  ISESPLFSVACVSSSP----SPRRYSPSTRLYVSGLSFRTTEESLRNAFKSFGQLVEVNL 120

Query: 121 VMDRLANRPRGFAFLRYASEEESQKAIEGMHGK 154
           VMDR+ANRPRGFAFLRYASEEESQKAIEGMHGK
Sbjct: 121 VMDRVANRPRGFAFLRYASEEESQKAIEGMHGK 149

[Close]

BLAST of CsaV3_1G005220 vs. ExPASy Swiss-Prot
Match: Q9FX45 (Organelle RRM domain-containing protein 6, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=ORRM6 PE=1 SV=1)

HSP 1 Score: 111.3 bits (277), Expect = 1.1e-23
Identity = 56/100 (56.00%), Postives = 76/100 (76.00%), Query Frame = 0


Query: 54  SARKTQSISDSLLFSVACVSSSPSSSSSPRRYTPSTRLYISGLSFRTTEESLRNAFKSFG 113
           SAR+ + I   L+ S  C+S+  SSS       P T+LY+SGLSFRTTE++LR+ F+ FG
Sbjct: 44  SARRRRDIGGVLISS--CLSTDSSSSPPSSSSGPKTKLYVSGLSFRTTEDTLRDTFEQFG 103

Query: 114 QLVEVNLVMDRLANRPRGFAFLRYASEEESQKAIEGMHGK 154
            L+ +N+VMD++ANRP+GFAFLRY +EEE+ KAI+GMHGK
Sbjct: 104 NLIHMNMVMDKVANRPKGFAFLRYETEEEAMKAIQGMHGK 141

[Close]

BLAST of CsaV3_1G005220 vs. ExPASy Swiss-Prot
Match: C0HFE5 (Organelle RRM domain-containing protein 1, chloroplastic OS=Zea mays OX=4577 GN=ORRM1 PE=2 SV=1)

HSP 1 Score: 73.9 bits (180), Expect = 1.9e-12
Identity = 31/64 (48.44%), Postives = 51/64 (79.69%), Query Frame = 0


Query: 90  RLYISGLSFRTTEESLRNAFKSFGQLVEVNLVMDRLANRPRGFAFLRYASEEESQKAIEG 149
           RL+++GLSF T+E++LR AF+ FG+LVEV ++MDR++ R +G+AF+ Y +EE    A++ 
Sbjct: 300 RLFVTGLSFYTSEKTLRAAFEPFGELVEVKIIMDRISKRSKGYAFVEYTTEEAGGAALKA 359

Query: 150 MHGK 154
           M+G+
Sbjct: 360 MNGQ 363

[Close]

BLAST of CsaV3_1G005220 vs. ExPASy Swiss-Prot
Match: Q9FIU6 (Organelle RRM domain-containing protein 2, mitochondrial OS=Arabidopsis thaliana OX=3702 GN=ORRM2 PE=1 SV=1)

HSP 1 Score: 73.9 bits (180), Expect = 1.9e-12
Identity = 39/82 (47.56%), Postives = 53/82 (64.63%), Query Frame = 0


Query: 74  SSPSSSSSPRR--YTPSTRLYISGLSFRTTEESLRNAFKSFGQLVEVNLVMDRLANRPRG 133
           S  + S +P R    PST L++SGLS RTT E LR AF  FG++ +  +V DR++   +G
Sbjct: 39  SPQAESQTPARPQAEPSTNLFVSGLSKRTTSEGLRTAFAQFGEVADAKVVTDRVSGYSKG 98

Query: 134 FAFLRYASEEESQKAIEGMHGK 154
           F F+RYA+ E+S K I GM GK
Sbjct: 99  FGFVRYATLEDSAKGIAGMDGK 120

[Close]

BLAST of CsaV3_1G005220 vs. ExPASy Swiss-Prot
Match: Q6YWP9 (Organelle RRM domain-containing protein 1, chloroplastic OS=Oryza sativa subsp. japonica OX=39947 GN=ORRM1 PE=3 SV=1)

HSP 1 Score: 73.2 bits (178), Expect = 3.3e-12
Identity = 32/76 (42.11%), Postives = 56/76 (73.68%), Query Frame = 0


Query: 78  SSSSPRRYTPSTRLYISGLSFRTTEESLRNAFKSFGQLVEVNLVMDRLANRPRGFAFLRY 137
           SS + +    + RL+++GLSF T+E++LR AF+ FG+LVEV ++MD+++ R +G+AF+ Y
Sbjct: 284 SSEATQAEVKTKRLFVTGLSFYTSEKTLRAAFEPFGELVEVKIIMDKISKRSKGYAFIEY 343

Query: 138 ASEEESQKAIEGMHGK 154
            +EE    A++ M+G+
Sbjct: 344 TTEEAGGAALKAMNGQ 359

[Close]

BLAST of CsaV3_1G005220 vs. ExPASy Swiss-Prot
Match: Q8L440 (Organelle RRM domain-containing protein 1, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=ORRM1 PE=1 SV=1)

HSP 1 Score: 71.6 bits (174), Expect = 9.5e-12
Identity = 36/81 (44.44%), Postives = 57/81 (70.37%), Query Frame = 0


Query: 73  SSSPSSSSSPRRYTPSTRLYISGLSFRTTEESLRNAFKSFGQLVEVNLVMDRLANRPRGF 132
           S     S SP     + +L+I+GLSF T+E++LR AF+ FG+LVEV ++MD+++ R +G+
Sbjct: 268 SRDQDDSESPP--VKTKKLFITGLSFYTSEKTLRAAFEGFGELVEVKIIMDKISKRSKGY 327

Query: 133 AFLRYASEEESQKAIEGMHGK 154
           AFL Y +EE +  A++ M+GK
Sbjct: 328 AFLEYTTEEAAGTALKEMNGK 346

[Close]

BLAST of CsaV3_1G005220 vs. ExPASy TrEMBL
Match: A0A0A0LQB8 (RRM domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_1G032430 PE=4 SV=1)

HSP 1 Score: 288.5 bits (737), Expect = 1.8e-74
Identity = 153/153 (100.00%), Postives = 153/153 (100.00%), Query Frame = 0


Query: 1   MTAGLSFTVTAAPKPFFQLQTTHHSSISSTETRMRIRSIQSKLAYSSTPLPFFSARKTQS 60
           MTAGLSFTVTAAPKPFFQLQTTHHSSISSTETRMRIRSIQSKLAYSSTPLPFFSARKTQS
Sbjct: 1   MTAGLSFTVTAAPKPFFQLQTTHHSSISSTETRMRIRSIQSKLAYSSTPLPFFSARKTQS 60

Query: 61  ISDSLLFSVACVSSSPSSSSSPRRYTPSTRLYISGLSFRTTEESLRNAFKSFGQLVEVNL 120
           ISDSLLFSVACVSSSPSSSSSPRRYTPSTRLYISGLSFRTTEESLRNAFKSFGQLVEVNL
Sbjct: 61  ISDSLLFSVACVSSSPSSSSSPRRYTPSTRLYISGLSFRTTEESLRNAFKSFGQLVEVNL 120

Query: 121 VMDRLANRPRGFAFLRYASEEESQKAIEGMHGK 154
           VMDRLANRPRGFAFLRYASEEESQKAIEGMHGK
Sbjct: 121 VMDRLANRPRGFAFLRYASEEESQKAIEGMHGK 153

[Close]

BLAST of CsaV3_1G005220 vs. ExPASy TrEMBL
Match: A0A5A7SXY0 (Glycine-rich RNA-binding protein 4 OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold112G00550 PE=4 SV=1)

HSP 1 Score: 260.0 bits (663), Expect = 7.0e-66
Identity = 137/153 (89.54%), Postives = 144/153 (94.12%), Query Frame = 0


Query: 1   MTAGLSFTVTAAPKPFFQLQTTHHSSISSTETRMRIRSIQSKLAYSSTPLPFFSARKTQS 60
           MTAGLSFTVTAAPKPFFQLQTTHH++I STET MR +S QSKLAYSSTPLPFFSARKTQS
Sbjct: 1   MTAGLSFTVTAAPKPFFQLQTTHHNNIRSTETHMRFQSFQSKLAYSSTPLPFFSARKTQS 60

Query: 61  ISDSLLFSVACVSSSPSSSSSPRRYTPSTRLYISGLSFRTTEESLRNAFKSFGQLVEVNL 120
           IS+S LFSVACVSSSP    SPRRY+PSTRLY+SGLSFRTTEESLRNAFKSFGQLVEVNL
Sbjct: 61  ISESPLFSVACVSSSP----SPRRYSPSTRLYVSGLSFRTTEESLRNAFKSFGQLVEVNL 120

Query: 121 VMDRLANRPRGFAFLRYASEEESQKAIEGMHGK 154
           VMDR+ANRPRGFAFLRYASEEESQKAIEGMHGK
Sbjct: 121 VMDRVANRPRGFAFLRYASEEESQKAIEGMHGK 149

[Close]

BLAST of CsaV3_1G005220 vs. ExPASy TrEMBL
Match: A0A5D3BIP7 (Glycine-rich RNA-binding protein 4 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold248G00650 PE=4 SV=1)

HSP 1 Score: 257.3 bits (656), Expect = 4.5e-65
Identity = 136/153 (88.89%), Postives = 143/153 (93.46%), Query Frame = 0


Query: 1   MTAGLSFTVTAAPKPFFQLQTTHHSSISSTETRMRIRSIQSKLAYSSTPLPFFSARKTQS 60
           MTAGLSFTVTAAPKPFF LQTTHH++I STET MR +S QSKLAYSSTPLPFFSARKTQS
Sbjct: 1   MTAGLSFTVTAAPKPFFLLQTTHHNNIRSTETHMRFQSFQSKLAYSSTPLPFFSARKTQS 60

Query: 61  ISDSLLFSVACVSSSPSSSSSPRRYTPSTRLYISGLSFRTTEESLRNAFKSFGQLVEVNL 120
           IS+S LFSVACVSSSP    SPRRY+PSTRLY+SGLSFRTTEESLRNAFKSFGQLVEVNL
Sbjct: 61  ISESPLFSVACVSSSP----SPRRYSPSTRLYVSGLSFRTTEESLRNAFKSFGQLVEVNL 120

Query: 121 VMDRLANRPRGFAFLRYASEEESQKAIEGMHGK 154
           VMDR+ANRPRGFAFLRYASEEESQKAIEGMHGK
Sbjct: 121 VMDRVANRPRGFAFLRYASEEESQKAIEGMHGK 149

[Close]

BLAST of CsaV3_1G005220 vs. ExPASy TrEMBL
Match: A0A1S3AYF6 (glycine-rich RNA-binding protein 4, mitochondrial-like isoform X1 OS=Cucumis melo OX=3656 GN=LOC103484245 PE=4 SV=1)

HSP 1 Score: 257.3 bits (656), Expect = 4.5e-65
Identity = 136/153 (88.89%), Postives = 143/153 (93.46%), Query Frame = 0


Query: 1   MTAGLSFTVTAAPKPFFQLQTTHHSSISSTETRMRIRSIQSKLAYSSTPLPFFSARKTQS 60
           MTAGLSFTVTAAPKPFF LQTTHH++I STET MR +S QSKLAYSSTPLPFFSARKTQS
Sbjct: 1   MTAGLSFTVTAAPKPFFLLQTTHHNNIRSTETHMRFQSFQSKLAYSSTPLPFFSARKTQS 60

Query: 61  ISDSLLFSVACVSSSPSSSSSPRRYTPSTRLYISGLSFRTTEESLRNAFKSFGQLVEVNL 120
           IS+S LFSVACVSSSP    SPRRY+PSTRLY+SGLSFRTTEESLRNAFKSFGQLVEVNL
Sbjct: 61  ISESPLFSVACVSSSP----SPRRYSPSTRLYVSGLSFRTTEESLRNAFKSFGQLVEVNL 120

Query: 121 VMDRLANRPRGFAFLRYASEEESQKAIEGMHGK 154
           VMDR+ANRPRGFAFLRYASEEESQKAIEGMHGK
Sbjct: 121 VMDRVANRPRGFAFLRYASEEESQKAIEGMHGK 149

[Close]

BLAST of CsaV3_1G005220 vs. ExPASy TrEMBL
Match: A0A1S4E0R2 (glycine-rich RNA-binding protein 4, mitochondrial-like isoform X2 OS=Cucumis melo OX=3656 GN=LOC103484245 PE=4 SV=1)

HSP 1 Score: 257.3 bits (656), Expect = 4.5e-65
Identity = 136/153 (88.89%), Postives = 143/153 (93.46%), Query Frame = 0


Query: 1   MTAGLSFTVTAAPKPFFQLQTTHHSSISSTETRMRIRSIQSKLAYSSTPLPFFSARKTQS 60
           MTAGLSFTVTAAPKPFF LQTTHH++I STET MR +S QSKLAYSSTPLPFFSARKTQS
Sbjct: 1   MTAGLSFTVTAAPKPFFLLQTTHHNNIRSTETHMRFQSFQSKLAYSSTPLPFFSARKTQS 60

Query: 61  ISDSLLFSVACVSSSPSSSSSPRRYTPSTRLYISGLSFRTTEESLRNAFKSFGQLVEVNL 120
           IS+S LFSVACVSSSP    SPRRY+PSTRLY+SGLSFRTTEESLRNAFKSFGQLVEVNL
Sbjct: 61  ISESPLFSVACVSSSP----SPRRYSPSTRLYVSGLSFRTTEESLRNAFKSFGQLVEVNL 120

Query: 121 VMDRLANRPRGFAFLRYASEEESQKAIEGMHGK 154
           VMDR+ANRPRGFAFLRYASEEESQKAIEGMHGK
Sbjct: 121 VMDRVANRPRGFAFLRYASEEESQKAIEGMHGK 149

[Close]

BLAST of CsaV3_1G005220 vs. TAIR 10
Match: AT1G73530.1 (RNA-binding (RRM/RBD/RNP motifs) family protein )

HSP 1 Score: 111.3 bits (277), Expect = 7.7e-25
Identity = 56/100 (56.00%), Postives = 76/100 (76.00%), Query Frame = 0


Query: 54  SARKTQSISDSLLFSVACVSSSPSSSSSPRRYTPSTRLYISGLSFRTTEESLRNAFKSFG 113
           SAR+ + I   L+ S  C+S+  SSS       P T+LY+SGLSFRTTE++LR+ F+ FG
Sbjct: 44  SARRRRDIGGVLISS--CLSTDSSSSPPSSSSGPKTKLYVSGLSFRTTEDTLRDTFEQFG 103

Query: 114 QLVEVNLVMDRLANRPRGFAFLRYASEEESQKAIEGMHGK 154
            L+ +N+VMD++ANRP+GFAFLRY +EEE+ KAI+GMHGK
Sbjct: 104 NLIHMNMVMDKVANRPKGFAFLRYETEEEAMKAIQGMHGK 141

[Close]

BLAST of CsaV3_1G005220 vs. TAIR 10
Match: AT5G54580.1 (RNA-binding (RRM/RBD/RNP motifs) family protein )

HSP 1 Score: 73.9 bits (180), Expect = 1.4e-13
Identity = 39/82 (47.56%), Postives = 53/82 (64.63%), Query Frame = 0


Query: 74  SSPSSSSSPRR--YTPSTRLYISGLSFRTTEESLRNAFKSFGQLVEVNLVMDRLANRPRG 133
           S  + S +P R    PST L++SGLS RTT E LR AF  FG++ +  +V DR++   +G
Sbjct: 39  SPQAESQTPARPQAEPSTNLFVSGLSKRTTSEGLRTAFAQFGEVADAKVVTDRVSGYSKG 98

Query: 134 FAFLRYASEEESQKAIEGMHGK 154
           F F+RYA+ E+S K I GM GK
Sbjct: 99  FGFVRYATLEDSAKGIAGMDGK 120

[Close]

BLAST of CsaV3_1G005220 vs. TAIR 10
Match: AT3G20930.1 (RNA-binding (RRM/RBD/RNP motifs) family protein )

HSP 1 Score: 71.6 bits (174), Expect = 6.8e-13
Identity = 36/81 (44.44%), Postives = 57/81 (70.37%), Query Frame = 0


Query: 73  SSSPSSSSSPRRYTPSTRLYISGLSFRTTEESLRNAFKSFGQLVEVNLVMDRLANRPRGF 132
           S     S SP     + +L+I+GLSF T+E++LR AF+ FG+LVEV ++MD+++ R +G+
Sbjct: 268 SRDQDDSESPP--VKTKKLFITGLSFYTSEKTLRAAFEGFGELVEVKIIMDKISKRSKGY 327

Query: 133 AFLRYASEEESQKAIEGMHGK 154
           AFL Y +EE +  A++ M+GK
Sbjct: 328 AFLEYTTEEAAGTALKEMNGK 346

[Close]

BLAST of CsaV3_1G005220 vs. TAIR 10
Match: AT5G06210.1 (RNA binding (RRM/RBD/RNP motifs) family protein )

HSP 1 Score: 71.6 bits (174), Expect = 6.8e-13
Identity = 40/88 (45.45%), Postives = 59/88 (67.05%), Query Frame = 0


Query: 66  LFSVACVSSSPSSSSSPRRYTPSTRLYISGLSFRTTEESLRNAFKSFGQLVEVNLVMDRL 125
           L SV  ++SS S   + RR   S +L+I GLSF TTE+ L  AF   GQ+VE  +VMDR+
Sbjct: 12  LKSVCLINSSASCFFTQRRGVAS-KLFIGGLSFCTTEQGLSEAFSKCGQVVEAQIVMDRV 71

Query: 126 ANRPRGFAFLRYASEEESQKAIEGMHGK 154
           ++R +GF F+ +AS +E+QKA+   +G+
Sbjct: 72  SDRSKGFGFVTFASADEAQKALMEFNGQ 98

[Close]

BLAST of CsaV3_1G005220 vs. TAIR 10
Match: AT2G27330.1 (RNA-binding (RRM/RBD/RNP motifs) family protein )

HSP 1 Score: 68.2 bits (165), Expect = 7.5e-12
Identity = 29/72 (40.28%), Postives = 54/72 (75.00%), Query Frame = 0


Query: 83  RRYTP-------STRLYISGLSFRTTEESLRNAFKSFGQLVEVNLVMDRLANRPRGFAFL 142
           R +TP       S+ L++ G+SF +TEE+L  AF  +GQ+++V+++MD++  RP+GFA++
Sbjct: 8   RSFTPLLFSRSFSSTLFVKGISFSSTEETLTQAFSQYGQVLKVDVIMDKIRCRPKGFAYV 67

Query: 143 RYASEEESQKAI 148
            ++S+EE++KA+
Sbjct: 68  TFSSKEEAEKAL 79

The following BLAST results are available for this feature:

BLAST of CsaV3_1G005220 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_031743837.1	7.3e-86	100.00	organelle RRM domain-containing protein 6, chloroplastic isoform X3 [Cucumis sat...	[more]
XP_011649648.1	3.8e-74	100.00	organelle RRM domain-containing protein 6, chloroplastic isoform X1 [Cucumis sat...	[more]
XP_011649654.1	3.8e-74	100.00	organelle RRM domain-containing protein 6, chloroplastic isoform X2 [Cucumis sat...	[more]
KAA0036062.1	1.4e-65	89.54	glycine-rich RNA-binding protein 4 [Cucumis melo var. makuwa]	[more]
XP_008439477.1	9.3e-65	88.89	PREDICTED: glycine-rich RNA-binding protein 4, mitochondrial-like isoform X1 [Cu...	[more]

BLAST of CsaV3_1G005220 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9FX45	1.1e-23	56.00	Organelle RRM domain-containing protein 6, chloroplastic OS=Arabidopsis thaliana...	[more]
C0HFE5	1.9e-12	48.44	Organelle RRM domain-containing protein 1, chloroplastic OS=Zea mays OX=4577 GN=...	[more]
Q9FIU6	1.9e-12	47.56	Organelle RRM domain-containing protein 2, mitochondrial OS=Arabidopsis thaliana...	[more]
Q6YWP9	3.3e-12	42.11	Organelle RRM domain-containing protein 1, chloroplastic OS=Oryza sativa subsp. ...	[more]
Q8L440	9.5e-12	44.44	Organelle RRM domain-containing protein 1, chloroplastic OS=Arabidopsis thaliana...	[more]

BLAST of CsaV3_1G005220 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0LQB8	1.8e-74	100.00	RRM domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_1G032430 PE=4 SV...	[more]
A0A5A7SXY0	7.0e-66	89.54	Glycine-rich RNA-binding protein 4 OS=Cucumis melo var. makuwa OX=1194695 GN=E6C...	[more]
A0A5D3BIP7	4.5e-65	88.89	Glycine-rich RNA-binding protein 4 OS=Cucumis melo var. makuwa OX=1194695 GN=E56...	[more]
A0A1S3AYF6	4.5e-65	88.89	glycine-rich RNA-binding protein 4, mitochondrial-like isoform X1 OS=Cucumis mel...	[more]
A0A1S4E0R2	4.5e-65	88.89	glycine-rich RNA-binding protein 4, mitochondrial-like isoform X2 OS=Cucumis mel...	[more]

BLAST of CsaV3_1G005220 vs. TAIR 10


Match Name	E-value	Identity	Description
AT1G73530.1	7.7e-25	56.00	RNA-binding (RRM/RBD/RNP motifs) family protein	[more]
AT5G54580.1	1.4e-13	47.56	RNA-binding (RRM/RBD/RNP motifs) family protein	[more]
AT3G20930.1	6.8e-13	44.44	RNA-binding (RRM/RBD/RNP motifs) family protein	[more]
AT5G06210.1	6.8e-13	45.45	RNA binding (RRM/RBD/RNP motifs) family protein	[more]
AT2G27330.1	7.5e-12	40.28	RNA-binding (RRM/RBD/RNP motifs) family protein	[more]

InterPro

Analysis Name: InterPro Annotations of Cucumber (Chinese Long) v3
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR000504	RNA recognition motif domain	SMART	SM00360	rrm1_1	coord: 90..165 e-value: 1.2E-19 score: 81.3
IPR000504	RNA recognition motif domain	PFAM	PF00076	RRM_1	coord: 91..153 e-value: 1.9E-16 score: 59.6
IPR000504	RNA recognition motif domain	PROSITE	PS50102	RRM	coord: 89..169 score: 16.261356
IPR012677	Nucleotide-binding alpha-beta plait domain superfamily	GENE3D	3.30.70.330		coord: 54..169 e-value: 2.4E-23 score: 84.8
None	No IPR available	PANTHER	PTHR15241	TRANSFORMER-2-RELATED	coord: 3..154
None	No IPR available	PANTHER	PTHR15241:SF328	RNA-BINDING PROTEIN 1	coord: 3..154
IPR035979	RNA-binding domain superfamily	SUPERFAMILY	54928	RNA-binding domain, RBD	coord: 75..153

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CsaV3_1G005220.1	CsaV3_1G005220.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
molecular_function	GO:0003676	nucleic acid binding