CsaV3_1G004490 (gene) Cucumber (Chinese Long) v3

Overview


Name	CsaV3_1G004490
Type	gene
Organism	Cucumis sativus L. var. sativus cv. Chinese Long (Cucumber (Chinese Long) v3)
Description	Unknown protein
Location	chr1: 2834685 .. 2834954 (-)
RNA-Seq Expression	CsaV3_1G004490
Synteny	CsaV3_1G004490

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGACATCGACTCAAATCCGATGTTGGCAATGATAAGGCCTGATGGCGCTGTTGCCTATGCAAAGCACATCAATAAGCAAGACTGCTCATGGATTCCTATACCAAATATACCTCGGGTTTGTTGTGTGTGTGTGTTTTGTAGCTCACTGAAGGCATGGAGCAGCCTACCAAAAAAGAAAAGAAAAAAAGACAAAAAAGGACTTCTACAACAGGTTACACCATCAAAGCCATCCAAACCAATCGAGGGAAGTCGTATCCAAACCGGCTAA

mRNA sequence

ATGGACATCGACTCAAATCCGATGTTGGCAATGATAAGGCCTGATGGCGCTGTTGCCTATGCAAAGCACATCAATAAGCAAGACTGCTCATGGATTCCTATACCAAATATACCTCGGGTTACACCATCAAAGCCATCCAAACCAATCGAGGGAAGTCGTATCCAAACCGGCTAA

Coding sequence (CDS)

ATGGACATCGACTCAAATCCGATGTTGGCAATGATAAGGCCTGATGGCGCTGTTGCCTATGCAAAGCACATCAATAAGCAAGACTGCTCATGGATTCCTATACCAAATATACCTCGGGTTACACCATCAAAGCCATCCAAACCAATCGAGGGAAGTCGTATCCAAACCGGCTAA

Protein sequence

MDIDSNPMLAMIRPDGAVAYAKHINKQDCSWIPIPNIPRVTPSKPSKPIEGSRIQTG*

Homology

[Close]

BLAST of CsaV3_1G004490 vs. NCBI nr
Match: KGN63890.1 (hypothetical protein Csa_014357 [Cucumis sativus])

HSP 1 Score: 124.8 bits (312), Expect = 2.5e-25
Identity = 57/57 (100.00%), Postives = 57/57 (100.00%), Query Frame = 0


Query: 1  MDIDSNPMLAMIRPDGAVAYAKHINKQDCSWIPIPNIPRVTPSKPSKPIEGSRIQTG 58
          MDIDSNPMLAMIRPDGAVAYAKHINKQDCSWIPIPNIPRVTPSKPSKPIEGSRIQTG
Sbjct: 1  MDIDSNPMLAMIRPDGAVAYAKHINKQDCSWIPIPNIPRVTPSKPSKPIEGSRIQTG 57

[Close]

BLAST of CsaV3_1G004490 vs. ExPASy TrEMBL
Match: A0A0A0LPR6 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G025230 PE=4 SV=1)

HSP 1 Score: 124.8 bits (312), Expect = 1.2e-25
Identity = 57/57 (100.00%), Postives = 57/57 (100.00%), Query Frame = 0


Query: 1  MDIDSNPMLAMIRPDGAVAYAKHINKQDCSWIPIPNIPRVTPSKPSKPIEGSRIQTG 58
          MDIDSNPMLAMIRPDGAVAYAKHINKQDCSWIPIPNIPRVTPSKPSKPIEGSRIQTG
Sbjct: 1  MDIDSNPMLAMIRPDGAVAYAKHINKQDCSWIPIPNIPRVTPSKPSKPIEGSRIQTG 57

The following BLAST results are available for this feature:

BLAST of CsaV3_1G004490 vs. NCBI nr


Match Name	E-value	Identity	Description
KGN63890.1	2.5e-25	100.00	hypothetical protein Csa_014357 [Cucumis sativus]	[more]

BLAST of CsaV3_1G004490 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of CsaV3_1G004490 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0LPR6	1.2e-25	100.00	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G025230 PE=4 SV=1	[more]

BLAST of CsaV3_1G004490 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Cucumber (Chinese Long) v3
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 36..57

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CsaV3_1G004490.1	CsaV3_1G004490.1	mRNA