CsaV3_1G002320 (gene) Cucumber (Chinese Long) v3

Overview


Name	CsaV3_1G002320
Type	gene
Organism	Cucumis sativus L. var. sativus cv. Chinese Long (Cucumber (Chinese Long) v3)
Description	CLE family OsCLE801 protein
Location	chr1: 1490477 .. 1490773 (-)
RNA-Seq Expression	CsaV3_1G002320
Synteny	CsaV3_1G002320

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGGTTCCTTGTTTAGCAGGAAAGGTTTGAGGTTTGTGTTTGTTGTAGCTTGTTTTTTGCTGTGTGTTCTTGATCAACAGCCTCAAACAACAGCAAATGGGCTTAGCACAATTGATGCTGCTCTCAAATGGGTAGCTTTCAAATCCACAAATACTATCAACACCCACAAAGCTGATTCATCAGATGAGAAAAATTTGAATTTAGCAGCTCCATCACCAGCCATGAACTTTGACCCAAATCAATCCAACAAAAGAGGAGTCAAGAAAGGATCTGATCCAATTCACAACAGATCTTAA

mRNA sequence

ATGGGTTCCTTGTTTAGCAGGAAAGGTTTGAGGTTTGTGTTTGTTGTAGCTTGTTTTTTGCTGTGTGTTCTTGATCAACAGCCTCAAACAACAGCAAATGGGCTTAGCACAATTGATGCTGCTCTCAAATGGGTAGCTTTCAAATCCACAAATACTATCAACACCCACAAAGCTGATTCATCAGATGAGAAAAATTTGAATTTAGCAGCTCCATCACCAGCCATGAACTTTGACCCAAATCAATCCAACAAAAGAGGAGTCAAGAAAGGATCTGATCCAATTCACAACAGATCTTAA

Coding sequence (CDS)

ATGGGTTCCTTGTTTAGCAGGAAAGGTTTGAGGTTTGTGTTTGTTGTAGCTTGTTTTTTGCTGTGTGTTCTTGATCAACAGCCTCAAACAACAGCAAATGGGCTTAGCACAATTGATGCTGCTCTCAAATGGGTAGCTTTCAAATCCACAAATACTATCAACACCCACAAAGCTGATTCATCAGATGAGAAAAATTTGAATTTAGCAGCTCCATCACCAGCCATGAACTTTGACCCAAATCAATCCAACAAAAGAGGAGTCAAGAAAGGATCTGATCCAATTCACAACAGATCTTAA

Protein sequence

MGSLFSRKGLRFVFVVACFLLCVLDQQPQTTANGLSTIDAALKWVAFKSTNTINTHKADSSDEKNLNLAAPSPAMNFDPNQSNKRGVKKGSDPIHNRS*

Homology

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BLAST of CsaV3_1G002320 vs. NCBI nr
Match: KGN63668.1 (hypothetical protein Csa_014085 [Cucumis sativus])

HSP 1 Score: 197.2 bits (500), Expect = 6.6e-47
Identity = 98/98 (100.00%), Postives = 98/98 (100.00%), Query Frame = 0


Query: 1  MGSLFSRKGLRFVFVVACFLLCVLDQQPQTTANGLSTIDAALKWVAFKSTNTINTHKADS 60
          MGSLFSRKGLRFVFVVACFLLCVLDQQPQTTANGLSTIDAALKWVAFKSTNTINTHKADS
Sbjct: 1  MGSLFSRKGLRFVFVVACFLLCVLDQQPQTTANGLSTIDAALKWVAFKSTNTINTHKADS 60

Query: 61 SDEKNLNLAAPSPAMNFDPNQSNKRGVKKGSDPIHNRS 99
          SDEKNLNLAAPSPAMNFDPNQSNKRGVKKGSDPIHNRS
Sbjct: 61 SDEKNLNLAAPSPAMNFDPNQSNKRGVKKGSDPIHNRS 98

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BLAST of CsaV3_1G002320 vs. NCBI nr
Match: KAG6589506.1 (hypothetical protein SDJN03_14929, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 114.0 bits (284), Expect = 7.4e-22
Identity = 68/101 (67.33%), Postives = 80/101 (79.21%), Query Frame = 0


Query: 1  MGSLFSRKGLRFVFVVACFLLCVLDQQPQTTANGLSTIDAALKWVAFKSTNTINTHKADS 60
          MG LF RK L F+F++A F+  +L  QPQ TA+GL+TID ALKWVAFKS   I+THKAD 
Sbjct: 1  MGFLFCRKVLFFLFLLAGFVFSLL--QPQ-TASGLATIDVALKWVAFKSP-AIHTHKADD 60

Query: 61 SDE----KNLNLAAPSPAMNFDPNQSNKRGVKKGSDPIHNR 98
          S++    KN+N+ APSPAMNFDPNQSNKR VKKGSDPIHNR
Sbjct: 61 SEKKLNMKNMNV-APSPAMNFDPNQSNKRRVKKGSDPIHNR 96

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BLAST of CsaV3_1G002320 vs. NCBI nr
Match: KAG6587538.1 (hypothetical protein SDJN03_16103, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 102.8 bits (255), Expect = 1.7e-18
Identity = 64/98 (65.31%), Postives = 73/98 (74.49%), Query Frame = 0


Query: 4  LFSRKGLRFVFVVACFLLCVLDQQPQTTANGLSTIDAALKWVAFKSTNTINTHKADSSDE 63
          + S K L F  ++A   LCV   QPQ TA+GL+TID ALKWVAFKS  T NTH  DS  +
Sbjct: 1  MLSTKALVFALLLAGVSLCV---QPQ-TASGLTTIDLALKWVAFKSPIT-NTHNPDSVKK 60

Query: 64 ---KNLNLAAPSPAMNFDPNQSNKRGVKKGSDPIHNRS 99
             KN++L APSPAM+FDPNQSNKRGVKKGSDPIHNRS
Sbjct: 61 LKMKNMSL-APSPAMHFDPNQSNKRGVKKGSDPIHNRS 92

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BLAST of CsaV3_1G002320 vs. NCBI nr
Match: PRQ16182.1 (hypothetical protein RchiOBHm_Chr7g0181441 [Rosa chinensis])

HSP 1 Score: 65.1 bits (157), Expect = 3.9e-07
Identity = 40/86 (46.51%), Postives = 57/86 (66.28%), Query Frame = 0


Query: 17 ACFLLCV--LDQQPQTTANGLSTIDAALKWVA--FKSTNTINTHKADSSDEKNLNLA-AP 76
          A  L+C+  L  QP+   +GL ++D AL+W    F   N+++  KA + ++    L+ AP
Sbjct: 9  AILLVCIGFLALQPE-KVSGLRSMDLALRWDKRHFSFLNSLHVVKAVAVEDLQAKLSLAP 68

Query: 77 SPAMNFDPNQSNKRGVKKGSDPIHNR 98
          +PAM FDP+QSNKR V+KGSDPIHNR
Sbjct: 69 APAMTFDPSQSNKRTVRKGSDPIHNR 93

[Close]

BLAST of CsaV3_1G002320 vs. NCBI nr
Match: KAG2675599.1 (hypothetical protein I3760_12G012200 [Carya illinoinensis] >KAG6632937.1 hypothetical protein CIPAW_12G013300 [Carya illinoinensis] >KAG6683424.1 hypothetical protein I3842_12G012000 [Carya illinoinensis] >KAG7951554.1 hypothetical protein I3843_12G013100 [Carya illinoinensis])

HSP 1 Score: 63.9 bits (154), Expect = 8.8e-07
Identity = 42/84 (50.00%), Postives = 55/84 (65.48%), Query Frame = 0


Query: 19 FLLC--VLDQQPQTTANGLSTIDAALKWVAFK--STNTINTHKADSSDEKNLNLA-APSP 78
          FL+C  VL  QP+ TA GL +ID ALKW   K      +   +  + ++ +  LA AP+P
Sbjct: 11 FLVCIGVLALQPEETA-GLRSIDLALKWDRAKLPFLKHLRDLQVVAVEDMHTELALAPAP 70

Query: 79 AMNFDPNQSNKRGVKKGSDPIHNR 98
          ++ FDPNQSNKR V+KGSDPIHNR
Sbjct: 71 SVMFDPNQSNKRTVRKGSDPIHNR 93

[Close]

BLAST of CsaV3_1G002320 vs. ExPASy TrEMBL
Match: A0A0A0LPD5 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G009720 PE=4 SV=1)

HSP 1 Score: 197.2 bits (500), Expect = 3.2e-47
Identity = 98/98 (100.00%), Postives = 98/98 (100.00%), Query Frame = 0


Query: 1  MGSLFSRKGLRFVFVVACFLLCVLDQQPQTTANGLSTIDAALKWVAFKSTNTINTHKADS 60
          MGSLFSRKGLRFVFVVACFLLCVLDQQPQTTANGLSTIDAALKWVAFKSTNTINTHKADS
Sbjct: 1  MGSLFSRKGLRFVFVVACFLLCVLDQQPQTTANGLSTIDAALKWVAFKSTNTINTHKADS 60

Query: 61 SDEKNLNLAAPSPAMNFDPNQSNKRGVKKGSDPIHNRS 99
          SDEKNLNLAAPSPAMNFDPNQSNKRGVKKGSDPIHNRS
Sbjct: 61 SDEKNLNLAAPSPAMNFDPNQSNKRGVKKGSDPIHNRS 98

[Close]

BLAST of CsaV3_1G002320 vs. ExPASy TrEMBL
Match: A0A2P6P2N1 (Uncharacterized protein OS=Rosa chinensis OX=74649 GN=RchiOBHm_Chr7g0181441 PE=4 SV=1)

HSP 1 Score: 65.1 bits (157), Expect = 1.9e-07
Identity = 40/86 (46.51%), Postives = 57/86 (66.28%), Query Frame = 0


Query: 17 ACFLLCV--LDQQPQTTANGLSTIDAALKWVA--FKSTNTINTHKADSSDEKNLNLA-AP 76
          A  L+C+  L  QP+   +GL ++D AL+W    F   N+++  KA + ++    L+ AP
Sbjct: 9  AILLVCIGFLALQPE-KVSGLRSMDLALRWDKRHFSFLNSLHVVKAVAVEDLQAKLSLAP 68

Query: 77 SPAMNFDPNQSNKRGVKKGSDPIHNR 98
          +PAM FDP+QSNKR V+KGSDPIHNR
Sbjct: 69 APAMTFDPSQSNKRTVRKGSDPIHNR 93

[Close]

BLAST of CsaV3_1G002320 vs. ExPASy TrEMBL
Match: A0A445ABG3 (Uncharacterized protein OS=Arachis hypogaea OX=3818 GN=Ahy_A08g041332 PE=4 SV=1)

HSP 1 Score: 63.9 bits (154), Expect = 4.2e-07
Identity = 43/89 (48.31%), Postives = 55/89 (61.80%), Query Frame = 0


Query: 11 RFVFVVACFLLCVLDQQPQTTANGLSTIDAALKWVAFKSTNTINTHKADSSDEKNLNL-A 70
          R  F++ C ++ VL  QP    +GL + D ALKW   +S       KA + ++    L  
Sbjct: 7  RGFFILVC-VIGVLASQP-CMVSGLRSQDLALKWDKGRS----RILKAVTVEDLQSKLDV 66

Query: 71 APSPAMNFDPNQSNKRGVKKGSDPIHNRS 99
          AP+P+M FDPNQSNKR VKKGSDPIHNRS
Sbjct: 67 APAPSMTFDPNQSNKRTVKKGSDPIHNRS 89

[Close]

BLAST of CsaV3_1G002320 vs. ExPASy TrEMBL
Match: A0A1R3KCL9 (Uncharacterized protein OS=Corchorus olitorius OX=93759 GN=COLO4_09292 PE=4 SV=1)

HSP 1 Score: 61.6 bits (148), Expect = 2.1e-06
Identity = 42/90 (46.67%), Postives = 57/90 (63.33%), Query Frame = 0


Query: 12 FVFVVACFLLCVLDQQPQTTANGLSTIDAALKWVAFKSTNTINTH--KADSSDE--KNLN 71
          F+ ++AC  L VL  QP+   +GL +ID AL+W         N+   KAD++ +  +   
Sbjct: 9  FLLLLACISLLVL--QPE-MVSGLRSIDLALRWDKGLLPFVRNSRFLKADAAVDSLQTRP 68

Query: 72 LAAPSPAMNFDPNQSNKRGVKKGSDPIHNR 98
            APSP+M FDPNQS+KR V+KGSDPIHNR
Sbjct: 69 SLAPSPSMMFDPNQSDKRRVRKGSDPIHNR 95

[Close]

BLAST of CsaV3_1G002320 vs. ExPASy TrEMBL
Match: A0A314YU30 (Uncharacterized protein OS=Prunus yedoensis var. nudiflora OX=2094558 GN=Pyn_16404 PE=4 SV=1)

HSP 1 Score: 61.2 bits (147), Expect = 2.8e-06
Identity = 41/101 (40.59%), Postives = 57/101 (56.44%), Query Frame = 0


Query: 1  MGSLFSRKGLRFVFVVACFLLCVLDQQPQTTANGLSTIDAALKWVAFKSTNTINTHKADS 60
          MG L  R  + FV       +  L  QP+   +GL ++D AL+W     +   + H  ++
Sbjct: 1  MGFLAYRSAVLFV------CIGFLALQPE-KVSGLRSMDLALRWDKGHMSFLKSLHLVEA 60

Query: 61 SDEKNLNL---AAPSPAMNFDPNQSNKRGVKKGSDPIHNRS 99
             ++L      AP+P+M FDPNQSNKR V+KGSDPIHNRS
Sbjct: 61 VAVEDLQAKLSLAPAPSMTFDPNQSNKRKVRKGSDPIHNRS 94

The following BLAST results are available for this feature:

BLAST of CsaV3_1G002320 vs. NCBI nr


Match Name	E-value	Identity	Description
KGN63668.1	6.6e-47	100.00	hypothetical protein Csa_014085 [Cucumis sativus]	[more]
KAG6589506.1	7.4e-22	67.33	hypothetical protein SDJN03_14929, partial [Cucurbita argyrosperma subsp. sorori...	[more]
KAG6587538.1	1.7e-18	65.31	hypothetical protein SDJN03_16103, partial [Cucurbita argyrosperma subsp. sorori...	[more]
PRQ16182.1	3.9e-07	46.51	hypothetical protein RchiOBHm_Chr7g0181441 [Rosa chinensis]	[more]
KAG2675599.1	8.8e-07	50.00	hypothetical protein I3760_12G012200 [Carya illinoinensis] >KAG6632937.1 hypothe...	[more]

BLAST of CsaV3_1G002320 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of CsaV3_1G002320 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0LPD5	3.2e-47	100.00	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G009720 PE=4 SV=1	[more]
A0A2P6P2N1	1.9e-07	46.51	Uncharacterized protein OS=Rosa chinensis OX=74649 GN=RchiOBHm_Chr7g0181441 PE=4...	[more]
A0A445ABG3	4.2e-07	48.31	Uncharacterized protein OS=Arachis hypogaea OX=3818 GN=Ahy_A08g041332 PE=4 SV=1	[more]
A0A1R3KCL9	2.1e-06	46.67	Uncharacterized protein OS=Corchorus olitorius OX=93759 GN=COLO4_09292 PE=4 SV=1	[more]
A0A314YU30	2.8e-06	40.59	Uncharacterized protein OS=Prunus yedoensis var. nudiflora OX=2094558 GN=Pyn_164...	[more]

BLAST of CsaV3_1G002320 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Cucumber (Chinese Long) v3
Date Performed: 2021-10-25

Position :

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x 1


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 56..98
None	No IPR available	PANTHER	PTHR36726:SF5	CLAVATA3/ESR (CLE) GENE FAMILY MEMBER MTCLE11	coord: 11..98
IPR038821	CLE-related protein 45-like	PANTHER	PTHR36726	CLAVATA3/ESR (CLE)-RELATED PROTEIN 45	coord: 11..98

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CsaV3_1G002320.1	CsaV3_1G002320.1	mRNA