CsaV3_1G002170 (gene) Cucumber (Chinese Long) v3

Overview


Name	CsaV3_1G002170
Type	gene
Organism	Cucumis sativus L. var. sativus cv. Chinese Long (Cucumber (Chinese Long) v3)
Description	Unknown protein
Location	chr1: 1405481 .. 1405736 (-)
RNA-Seq Expression	CsaV3_1G002170
Synteny	CsaV3_1G002170

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGTACAGTACAGGGGAGCTTCTAAGAAAATTCAGAAAGTTAAAAGATAATAAGAATAAGAAAAGGTGATGGTTGAAATTGAATAACAATATATATATATATATATATATAGTAATTATATTTATATAGATAGTAATAATAATAATTTAGTAGAGGAATGGGAGATGAACCGACCCGACCCGGTCCAGTAGGGCAACCAAGTTTGCTGGCTAACCTCGGGATCAAGGCCGTTGACTCCATATTATTAAGGATATAA

mRNA sequence

ATGTACAGTACAGGGGAGCTTCTAAGAAAATTCAGAAAGTTAAAAGATAATAAGAATAAGAAAAGTAGAGGAATGGGAGATGAACCGACCCGACCCGGTCCAGTAGGGCAACCAAGTTTGCTGGCTAACCTCGGGATCAAGGCCGTTGACTCCATATTATTAAGGATATAA

Coding sequence (CDS)

ATGTACAGTACAGGGGAGCTTCTAAGAAAATTCAGAAAGTTAAAAGATAATAAGAATAAGAAAAGTAGAGGAATGGGAGATGAACCGACCCGACCCGGTCCAGTAGGGCAACCAAGTTTGCTGGCTAACCTCGGGATCAAGGCCGTTGACTCCATATTATTAAGGATATAA

Protein sequence

MYSTGELLRKFRKLKDNKNKKSRGMGDEPTRPGPVGQPSLLANLGIKAVDSILLRI*

Homology

[Close]

BLAST of CsaV3_1G002170 vs. NCBI nr
Match: KGN63653.1 (hypothetical protein Csa_013928 [Cucumis sativus])

HSP 1 Score: 113.2 bits (282), Expect = 7.3e-22
Identity = 56/56 (100.00%), Postives = 56/56 (100.00%), Query Frame = 0


Query: 1  MYSTGELLRKFRKLKDNKNKKSRGMGDEPTRPGPVGQPSLLANLGIKAVDSILLRI 57
          MYSTGELLRKFRKLKDNKNKKSRGMGDEPTRPGPVGQPSLLANLGIKAVDSILLRI
Sbjct: 1  MYSTGELLRKFRKLKDNKNKKSRGMGDEPTRPGPVGQPSLLANLGIKAVDSILLRI 56

[Close]

BLAST of CsaV3_1G002170 vs. ExPASy TrEMBL
Match: A0A0A0LPC2 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G009080 PE=4 SV=1)

HSP 1 Score: 113.2 bits (282), Expect = 3.5e-22
Identity = 56/56 (100.00%), Postives = 56/56 (100.00%), Query Frame = 0


Query: 1  MYSTGELLRKFRKLKDNKNKKSRGMGDEPTRPGPVGQPSLLANLGIKAVDSILLRI 57
          MYSTGELLRKFRKLKDNKNKKSRGMGDEPTRPGPVGQPSLLANLGIKAVDSILLRI
Sbjct: 1  MYSTGELLRKFRKLKDNKNKKSRGMGDEPTRPGPVGQPSLLANLGIKAVDSILLRI 56

The following BLAST results are available for this feature:

BLAST of CsaV3_1G002170 vs. NCBI nr


Match Name	E-value	Identity	Description
KGN63653.1	7.3e-22	100.00	hypothetical protein Csa_013928 [Cucumis sativus]	[more]

BLAST of CsaV3_1G002170 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of CsaV3_1G002170 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0LPC2	3.5e-22	100.00	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G009080 PE=4 SV=1	[more]

BLAST of CsaV3_1G002170 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Cucumber (Chinese Long) v3
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 12..39

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CsaV3_1G002170.1	CsaV3_1G002170.1	mRNA