CsaV3_1G000540 (gene) Cucumber (Chinese Long) v3

Overview
NameCsaV3_1G000540
Typegene
OrganismCucumis sativus L. var. sativus cv. Chinese Long (Cucumber (Chinese Long) v3)
DescriptionProtein transport protein Sec61 subunit gamma-like
Locationchr1: 303180 .. 303334 (-)
RNA-Seq ExpressionCsaV3_1G000540
SyntenyCsaV3_1G000540
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
AAAACAAGAACGGAGAAGAACCAAACCTTTCAAGATCCGACGATTATATTGTTAATGGGAATAAAGATCAAGTTGACGAAGAACCCAACAAATCCCATCACGACGAAACCGATAGCTGTACGGAATGCCACTTTAGTGAATTCTGTGTCACAGTG

mRNA sequence

AAAACAAGAACGGAGAAGAACCAAACCTTTCAAGATCCGACGATTATATTGTTAATGGGAATAAAGATCAAGTTGACGAAGAACCCAACAAATCCCATCACGACGAAACCGATAGCTGTACGGAATGCCACTTTAGTGAATTCTGTGTCACAGTG

Coding sequence (CDS)

AAAACAAGAACGGAGAAGAACCAAACCTTTCAAGATCCGACGATTATATTGTTAATGGGAATAAAGATCAAGTTGACGAAGAACCCAACAAATCCCATCACGACGAAACCGATAGCTGTACGGAATGCCACTTTAGTGAATTCTGTGTCACAGTG

Protein sequence

KTRTEKNQTFQDPTIILLMGIKIKLTKNPTNPITTKPIAVRNATLVNSVSQX
Homology
[Close]
BLAST of CsaV3_1G000540 vs. NCBI nr
Match: AFK44844.1 (unknown [Medicago truncatula])

HSP 1 Score: 56.2 bits (134), Expect = 9.6e-05
Identity = 28/35 (80.00%), Postives = 32/35 (91.43%), Query Frame = 0 

Query: 15 IILLMGIKIKLTKNPTNPITTKPIAVRNATLVNSV 50
          ++LL+GIKI LTKNPTNPITTKPIAVR ATL NS+
Sbjct: 1  MMLLIGIKISLTKNPTNPITTKPIAVRTATLENSL 35

[Close]
BLAST of CsaV3_1G000540 vs. ExPASy TrEMBL
Match: A0A7C9DHL3 (Uncharacterized protein (Fragment) OS=Opuntia streptacantha OX=393608 PE=4 SV=1)

HSP 1 Score: 66.2 bits (160), Expect = 4.5e-08
Identity = 35/45 (77.78%), Postives = 39/45 (86.67%), Query Frame = 0 

Query: 6  KNQTFQ-DPTIILLMGIKIKLTKNPTNPITTKPIAVRNATLVNSV 50
          K   FQ DPT++LLMGIK+ LTKNPTNPITTKPIAVR ATLVNS+
Sbjct: 5  KTIAFQPDPTMMLLMGIKMSLTKNPTNPITTKPIAVRKATLVNSL 49

[Close]
BLAST of CsaV3_1G000540 vs. ExPASy TrEMBL
Match: A0A7C8ZCJ2 (Uncharacterized protein OS=Opuntia streptacantha OX=393608 PE=4 SV=1)

HSP 1 Score: 66.2 bits (160), Expect = 4.5e-08
Identity = 35/45 (77.78%), Postives = 39/45 (86.67%), Query Frame = 0 

Query: 6  KNQTFQ-DPTIILLMGIKIKLTKNPTNPITTKPIAVRNATLVNSV 50
          K   FQ DPT++LLMGIK+ LTKNPTNPITTKPIAVR ATLVNS+
Sbjct: 5  KTIAFQPDPTMMLLMGIKMSLTKNPTNPITTKPIAVRKATLVNSL 49

[Close]
BLAST of CsaV3_1G000540 vs. ExPASy TrEMBL
Match: A0A7C9DAV8 (Uncharacterized protein (Fragment) OS=Opuntia streptacantha OX=393608 PE=4 SV=1)

HSP 1 Score: 66.2 bits (160), Expect = 4.5e-08
Identity = 35/45 (77.78%), Postives = 39/45 (86.67%), Query Frame = 0 

Query: 6  KNQTFQ-DPTIILLMGIKIKLTKNPTNPITTKPIAVRNATLVNSV 50
          K   FQ DPT++LLMGIK+ LTKNPTNPITTKPIAVR ATLVNS+
Sbjct: 16 KTIAFQPDPTMMLLMGIKMSLTKNPTNPITTKPIAVRKATLVNSL 60

[Close]
BLAST of CsaV3_1G000540 vs. ExPASy TrEMBL
Match: A0A7C9DJR8 (Uncharacterized protein (Fragment) OS=Opuntia streptacantha OX=393608 PE=4 SV=1)

HSP 1 Score: 66.2 bits (160), Expect = 4.5e-08
Identity = 35/45 (77.78%), Postives = 39/45 (86.67%), Query Frame = 0 

Query: 6  KNQTFQ-DPTIILLMGIKIKLTKNPTNPITTKPIAVRNATLVNSV 50
          K   FQ DPT++LLMGIK+ LTKNPTNPITTKPIAVR ATLVNS+
Sbjct: 5  KTIAFQPDPTMMLLMGIKMSLTKNPTNPITTKPIAVRKATLVNSL 49

[Close]
BLAST of CsaV3_1G000540 vs. ExPASy TrEMBL
Match: A0A7C8ZB18 (Uncharacterized protein (Fragment) OS=Opuntia streptacantha OX=393608 PE=4 SV=1)

HSP 1 Score: 66.2 bits (160), Expect = 4.5e-08
Identity = 35/45 (77.78%), Postives = 39/45 (86.67%), Query Frame = 0 

Query: 6  KNQTFQ-DPTIILLMGIKIKLTKNPTNPITTKPIAVRNATLVNSV 50
          K   FQ DPT++LLMGIK+ LTKNPTNPITTKPIAVR ATLVNS+
Sbjct: 5  KTIAFQPDPTMMLLMGIKMSLTKNPTNPITTKPIAVRKATLVNSL 49

The following BLAST results are available for this feature:
BLAST of CsaV3_1G000540 vs. NCBI nr
Match NameE-valueIdentityDescription
AFK44844.19.6e-0580.00unknown [Medicago truncatula][more]
BLAST of CsaV3_1G000540 vs. NCBI nr
Match NameE-valueIdentityDescription
BLAST of CsaV3_1G000540 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A7C9DHL34.5e-0877.78Uncharacterized protein (Fragment) OS=Opuntia streptacantha OX=393608 PE=4 SV=1[more]
A0A7C8ZCJ24.5e-0877.78Uncharacterized protein OS=Opuntia streptacantha OX=393608 PE=4 SV=1[more]
A0A7C9DAV84.5e-0877.78Uncharacterized protein (Fragment) OS=Opuntia streptacantha OX=393608 PE=4 SV=1[more]
A0A7C9DJR84.5e-0877.78Uncharacterized protein (Fragment) OS=Opuntia streptacantha OX=393608 PE=4 SV=1[more]
A0A7C8ZB184.5e-0877.78Uncharacterized protein (Fragment) OS=Opuntia streptacantha OX=393608 PE=4 SV=1[more]
BLAST of CsaV3_1G000540 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CsaV3_1G000540.1CsaV3_1G000540.1mRNA