CsaV3_1G000350 (gene) Cucumber (Chinese Long) v3

Overview
NameCsaV3_1G000350
Typegene
OrganismCucumis sativus L. var. sativus cv. Chinese Long (Cucumber (Chinese Long) v3)
DescriptionUnknown protein
Locationchr1: 224252 .. 224452 (+)
RNA-Seq ExpressionCsaV3_1G000350
SyntenyCsaV3_1G000350
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGAATCAGAAGCATTCGGAGCCCATGCCCATATCAGCTTCGGCTTCGGCTTCATCTTTTTGTGGCAAGCCGAGGCCGCATAGTGCACGTCAACAAATACATGGTACTTTTCTTGTTTCAACTTTAGTCGACGTGGCCACGATGACAAGGCGGAAAGATTTCTTGTACTCGGGGCTAATCTTGGTCATTTTCACCAAATAA

mRNA sequence

ATGAATCAGAAGCATTCGGAGCCCATGCCCATATCAGCTTCGGCTTCGGCTTCATCTTTTTGTGGCAAGCCGAGGCCGCATAGTGCACGTCAACAAATACATGGTACTTTTCTTGTTTCAACTTTAGTCGACGTGGCCACGATGACAAGGCGGAAAGATTTCTTGTACTCGGGGCTAATCTTGGTCATTTTCACCAAATAA

Coding sequence (CDS)

ATGAATCAGAAGCATTCGGAGCCCATGCCCATATCAGCTTCGGCTTCGGCTTCATCTTTTTGTGGCAAGCCGAGGCCGCATAGTGCACGTCAACAAATACATGGTACTTTTCTTGTTTCAACTTTAGTCGACGTGGCCACGATGACAAGGCGGAAAGATTTCTTGTACTCGGGGCTAATCTTGGTCATTTTCACCAAATAA

Protein sequence

MNQKHSEPMPISASASASSFCGKPRPHSARQQIHGTFLVSTLVDVATMTRRKDFLYSGLILVIFTK*
Homology
[Close]
BLAST of CsaV3_1G000350 vs. NCBI nr
Match: KGN63463.1 (hypothetical protein Csa_014345 [Cucumis sativus])

HSP 1 Score: 132.5 bits (332), Expect = 1.4e-27
Identity = 66/66 (100.00%), Postives = 66/66 (100.00%), Query Frame = 0 

Query: 1  MNQKHSEPMPISASASASSFCGKPRPHSARQQIHGTFLVSTLVDVATMTRRKDFLYSGLI 60
          MNQKHSEPMPISASASASSFCGKPRPHSARQQIHGTFLVSTLVDVATMTRRKDFLYSGLI
Sbjct: 1  MNQKHSEPMPISASASASSFCGKPRPHSARQQIHGTFLVSTLVDVATMTRRKDFLYSGLI 60

Query: 61 LVIFTK 67
          LVIFTK
Sbjct: 61 LVIFTK 66

[Close]
BLAST of CsaV3_1G000350 vs. ExPASy TrEMBL
Match: A0A0A0LNU5 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G001350 PE=4 SV=1)

HSP 1 Score: 132.5 bits (332), Expect = 6.6e-28
Identity = 66/66 (100.00%), Postives = 66/66 (100.00%), Query Frame = 0 

Query: 1  MNQKHSEPMPISASASASSFCGKPRPHSARQQIHGTFLVSTLVDVATMTRRKDFLYSGLI 60
          MNQKHSEPMPISASASASSFCGKPRPHSARQQIHGTFLVSTLVDVATMTRRKDFLYSGLI
Sbjct: 1  MNQKHSEPMPISASASASSFCGKPRPHSARQQIHGTFLVSTLVDVATMTRRKDFLYSGLI 60

Query: 61 LVIFTK 67
          LVIFTK
Sbjct: 61 LVIFTK 66

The following BLAST results are available for this feature:
BLAST of CsaV3_1G000350 vs. NCBI nr
Match NameE-valueIdentityDescription
KGN63463.11.4e-27100.00hypothetical protein Csa_014345 [Cucumis sativus][more]
BLAST of CsaV3_1G000350 vs. NCBI nr
Match NameE-valueIdentityDescription
BLAST of CsaV3_1G000350 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A0A0LNU56.6e-28100.00Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G001350 PE=4 SV=1[more]
BLAST of CsaV3_1G000350 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
InterPro
Analysis Name: InterPro Annotations of Cucumber (Chinese Long) v3
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1..28
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1..21

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CsaV3_1G000350.1CsaV3_1G000350.1mRNA