CsGy7G019840 (gene) Cucumber (Gy14) v2.1

Overview


Name	CsGy7G019840
Type	gene
Organism	Cucumis sativus L. var. sativus cv. Gy14 (Cucumber (Gy14) v2.1)
Description	30S ribosomal protein S17, chloroplastic
Location	Gy14Chr7: 22370321 .. 22371488 (+)
RNA-Seq Expression	CsGy7G019840
Synteny	CsGy7G019840

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRexonCDSpolypeptidethree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

ACACGATTCACCCTCCTCCCGTTCATCTCTTCTTATCTTCGTCTTCTTCAATTCGGATAACACAAAAATCCCTAAAACAAAATGTCTATAACTCTAACTTCCTCATCCCTTCTTCAAATTCCTCCAGTACAGAGCTTGAAGAAGCTCTCAATTTCCTCCTCTTTCCTCCATGGCTCAACTCCTCTCTCATTCCTCTCTAAGCCCTCTTCCTCATCGTCGCCATTCCCCTCCCAAACCCCCAATTTCCTCCCCTCCATTAGGGCCATGAGGTCCCTCCAAGGCCGCGTGGTTTGTGCCACCAACGACAAAACCGTCGCCGTTGAGGTAGTCCGATTAGCGCCTCATCCGAAATACAAGCGCCGGATTAGAATCAAGAAGAAGTACCAGGCACACGATCCGGATAACCAGTTCCAGGTTGGAGATTTTGTGGAGCTTGAAAAATGCCGTCCGATTAGTAAGATGAAGACGTTCCTGGCTATTCCGGTTCCAGCGAGGAATTCGAAGAAGAAAGCGGTGGAAGGTGGTGAGGGAGGAGAGCTTGGAATTCCATTGGAGTCTCAGCAAGAACAGGTTTGATTGATTGTAATTGGTTGGTTTTATGGATCTGAATATTGTTTGTGGTTTTGATGAATGACTCGTGAATGTTATATCGATGAGACTGGACCCAAGTTGTCCGAATTTTAGAATTTTTTATTTTCGAATTCTTTTTGCCATTGCCATTGCCATCGATGATGCCTTTTTGATTTGGTAACAGAATTGACGATGACATTGATGAACAAGCGTTGTTGCTATTCAAAATTTATTGATTCTTCCTTTAGGTTTAGAAAATAGTCTGATTTGAATTTCATGCTATCTTTACTACTAAAATCATACTCTCAAATTTAGAATAATTCTTTCTAATTCAAGTTTTTAAAAATAGGTTTAAAATAGATCATAAGAAGGAATTCTTACATCTAATATGTACGAATCGAGAATGTTTGCATGTGTGCTTCACTAGGACGGAATAACGAGTCTAAAGTATGCTTAAAAAGATTCAAATTATACTCAAGATAGATCATAGTTTAACGATCAAGTGTCATGACAATAAAAACGAGAACCAATGTTAATTTGTTGAATGTTTGCATGAGTGCTTCACTAGATTGGGTTATTACATTATCTACCACGAGTC

mRNA sequence

ACACGATTCACCCTCCTCCCGTTCATCTCTTCTTATCTTCGTCTTCTTCAATTCGGATAACACAAAAATCCCTAAAACAAAATGTCTATAACTCTAACTTCCTCATCCCTTCTTCAAATTCCTCCAGTACAGAGCTTGAAGAAGCTCTCAATTTCCTCCTCTTTCCTCCATGGCTCAACTCCTCTCTCATTCCTCTCTAAGCCCTCTTCCTCATCGTCGCCATTCCCCTCCCAAACCCCCAATTTCCTCCCCTCCATTAGGGCCATGAGGTCCCTCCAAGGCCGCGTGGTTTGTGCCACCAACGACAAAACCGTCGCCGTTGAGGTAGTCCGATTAGCGCCTCATCCGAAATACAAGCGCCGGATTAGAATCAAGAAGAAGTACCAGGCACACGATCCGGATAACCAGTTCCAGGTTGGAGATTTTGTGGAGCTTGAAAAATGCCGTCCGATTAGTAAGATGAAGACGTTCCTGGCTATTCCGGTTCCAGCGAGGAATTCGAAGAAGAAAGCGGTGGAAGGTGGTGAGGGAGGAGAGCTTGGAATTCCATTGGAGTCTCAGCAAGAACAGGTTTGATTGATTGTAATTGGTTGGTTTTATGGATCTGAATATTGTTTGTGGTTTTGATGAATGACTCGTGAATGTTATATCGATGAGACTGGACCCAAGTTGTCCGAATTTTAGAATTTTTTATTTTCGAATTCTTTTTGCCATTGCCATTGCCATCGATGATGCCTTTTTGATTTGGTAACAGAATTGACGATGACATTGATGAACAAGCGTTGTTGCTATTCAAAATTTATTGATTCTTCCTTTAGGTTTAGAAAATAGTCTGATTTGAATTTCATGCTATCTTTACTACTAAAATCATACTCTCAAATTTAGAATAATTCTTTCTAATTCAAGTTTTTAAAAATAGGTTTAAAATAGATCATAAGAAGGAATTCTTACATCTAATATGTACGAATCGAGAATGTTTGCATGTGTGCTTCACTAGGACGGAATAACGAGTCTAAAGTATGCTTAAAAAGATTCAAATTATACTCAAGATAGATCATAGTTTAACGATCAAGTGTCATGACAATAAAAACGAGAACCAATGTTAATTTGTTGAATGTTTGCATGAGTGCTTCACTAGATTGGGTTATTACATTATCTACCACGAGTC

Coding sequence (CDS)

ATGTCTATAACTCTAACTTCCTCATCCCTTCTTCAAATTCCTCCAGTACAGAGCTTGAAGAAGCTCTCAATTTCCTCCTCTTTCCTCCATGGCTCAACTCCTCTCTCATTCCTCTCTAAGCCCTCTTCCTCATCGTCGCCATTCCCCTCCCAAACCCCCAATTTCCTCCCCTCCATTAGGGCCATGAGGTCCCTCCAAGGCCGCGTGGTTTGTGCCACCAACGACAAAACCGTCGCCGTTGAGGTAGTCCGATTAGCGCCTCATCCGAAATACAAGCGCCGGATTAGAATCAAGAAGAAGTACCAGGCACACGATCCGGATAACCAGTTCCAGGTTGGAGATTTTGTGGAGCTTGAAAAATGCCGTCCGATTAGTAAGATGAAGACGTTCCTGGCTATTCCGGTTCCAGCGAGGAATTCGAAGAAGAAAGCGGTGGAAGGTGGTGAGGGAGGAGAGCTTGGAATTCCATTGGAGTCTCAGCAAGAACAGGTTTGA

Protein sequence

MSITLTSSSLLQIPPVQSLKKLSISSSFLHGSTPLSFLSKPSSSSSPFPSQTPNFLPSIRAMRSLQGRVVCATNDKTVAVEVVRLAPHPKYKRRIRIKKKYQAHDPDNQFQVGDFVELEKCRPISKMKTFLAIPVPARNSKKKAVEGGEGGELGIPLESQQEQV*

Homology

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BLAST of CsGy7G019840 vs. ExPASy Swiss-Prot
Match: P16180 (30S ribosomal protein S17, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=RPS17 PE=1 SV=1)

HSP 1 Score: 179.1 bits (453), Expect = 4.1e-44
Identity = 98/145 (67.59%), Postives = 117/145 (80.69%), Query Frame = 0


Query: 18  SLKKLSISSSFLHGSTPLSFLSKPSSSSSPFPS-QTPNFLPSIRAMRSLQGRVVCATNDK 77
           SL+ L +SS F HGSTPLS LSKP+S    FP+ + P  +P IRAM+++QGRVVCAT+DK
Sbjct: 9   SLQALKLSSPFAHGSTPLSSLSKPNS----FPNHRMPALVPVIRAMKTMQGRVVCATSDK 68

Query: 78  TVAVEVVRLAPHPKYKRRIRIKKKYQAHDPDNQFQVGDFVELEKCRPISKMKTFLAIPVP 137
           TVAVEVVRLAPHPKYKRR+R+KKKYQAHDPDNQF+VGD V LEK RPISK K+F+A+PV 
Sbjct: 69  TVAVEVVRLAPHPKYKRRVRMKKKYQAHDPDNQFKVGDVVRLEKSRPISKTKSFVALPVI 128

Query: 138 ARNSKKKAVEGGEGGELGIPLESQQ 162
           AR ++K   E G    LG+PLESQQ
Sbjct: 129 ARAARK--AEAGGDELLGLPLESQQ 147

[Close]

BLAST of CsGy7G019840 vs. ExPASy Swiss-Prot
Match: P82137 (30S ribosomal protein S17, chloroplastic OS=Spinacia oleracea OX=3562 GN=RPS17 PE=1 SV=2)

HSP 1 Score: 159.1 bits (401), Expect = 4.4e-38
Identity = 98/163 (60.12%), Postives = 115/163 (70.55%), Query Frame = 0


Query: 7   SSSLLQIPPVQSLKKLSISSSFLHGSTP----LSFLSKPSSSSSPFPSQTPNFLPSIRAM 66
           S SLL+ PP+ S    S  + FLHG+T     L   S  S SSSP  S T    P I+AM
Sbjct: 4   SFSLLK-PPLSS----SNPNPFLHGTTTKLSLLPSFSALSLSSSPPSSSTTYTFPVIKAM 63

Query: 67  RSLQGRVVCATNDKTVAVEVVRLAPHPKYKRRIRIKKKYQAHDPDNQFQVGDFVELEKCR 126
           RS+QG+V+CATNDKTV VEVVRLAPHPKYKRR+R KKKYQAHDPDNQF+VGD+V+L+KCR
Sbjct: 64  RSMQGKVICATNDKTVNVEVVRLAPHPKYKRRVRKKKKYQAHDPDNQFKVGDWVQLDKCR 123

Query: 127 PISKMKTFLAIPVPARNS---KKKAVEGGEGGELGIPLESQQE 163
           PISK KTFLA+    R S   + K ++     ELGIPLESQ E
Sbjct: 124 PISKTKTFLAVAPEGRQSSATRPKPIQAA-SDELGIPLESQVE 160

[Close]

BLAST of CsGy7G019840 vs. ExPASy Swiss-Prot
Match: P17092 (30S ribosomal protein S17, chloroplastic (Fragment) OS=Pisum sativum OX=3888 GN=RPS17 PE=2 SV=1)

HSP 1 Score: 149.1 bits (375), Expect = 4.5e-35
Identity = 77/128 (60.16%), Postives = 96/128 (75.00%), Query Frame = 0


Query: 35  LSFLSKPSSSSSPFPSQTPNFLPSIRAMRSLQGRVVCATNDKTVAVEVVRLAPHPKYKRR 94
           L+  S P SS            P+I+AM++++G+VVCA+ +KTVAVEV RLAPHPKY++R
Sbjct: 11  LNRFSNPISSPQTQTQTRSLPFPAIKAMKTMEGKVVCASGNKTVAVEVTRLAPHPKYQKR 70

Query: 95  IRIKKKYQAHDPDNQFQVGDFVELEKCRPISKMKTFLAIPVPARNSKKKAVEGGEGGELG 154
           IR+KKKYQAHDP+N F+VGD V+L K RPISK KTFLA+P P+R SKK     G  GELG
Sbjct: 71  IRLKKKYQAHDPENDFKVGDIVQLLKTRPISKKKTFLAVPAPSRKSKK----AGSSGELG 130

Query: 155 IPLESQQE 163
           IPL+SQQE
Sbjct: 131 IPLQSQQE 134

[Close]

BLAST of CsGy7G019840 vs. ExPASy Swiss-Prot
Match: Q9TJN6 (30S ribosomal protein S17, chloroplastic OS=Zea mays OX=4577 GN=RPS17 PE=2 SV=1)

HSP 1 Score: 125.9 bits (315), Expect = 4.1e-28
Identity = 75/130 (57.69%), Postives = 89/130 (68.46%), Query Frame = 0


Query: 38  LSKP--SSSSSPFPSQTPNFLPSIR--AMRSLQGRVVCATNDKTVAVEVVRLAPHPKYKR 97
           LS P  S S  P P  +    P++R  A R L GRVV    DKTV VEVVRLAPHPKYKR
Sbjct: 4   LSSPFVSVSPPPPPLSSHGARPALRIEAARQLTGRVVTTKADKTVGVEVVRLAPHPKYKR 63

Query: 98  RIRIKKKYQAHDPDNQFQVGDFVELEKCRPISKMKTFLAIPVPARNSKKKAVEGGEGGEL 157
           R RIKKKYQAHDPDNQF+VGD VEL+  RPISK K FLAIP+P R++++K+       +L
Sbjct: 64  RERIKKKYQAHDPDNQFKVGDVVELQPSRPISKTKHFLAIPLPPRDTRRKS-------QL 123

Query: 158 GIPLESQQEQ 164
             PL+S  +Q
Sbjct: 124 LPPLQSDDDQ 126

[Close]

BLAST of CsGy7G019840 vs. ExPASy Swiss-Prot
Match: Q9ZST1 (30S ribosomal protein S17, chloroplastic OS=Oryza sativa subsp. japonica OX=39947 GN=RPS17 PE=2 SV=1)

HSP 1 Score: 123.6 bits (309), Expect = 2.0e-27
Identity = 70/131 (53.44%), Postives = 88/131 (67.18%), Query Frame = 0


Query: 32  STPLSFLSKPSSSSSPFPSQTPNFLPSIRAMRSLQGRVVCATNDKTVAVEVVRLAPHPKY 91
           S+P+       S +SP+          I+A + L GRVV    DKTV VEVVRLAPHPKY
Sbjct: 9   SSPVRVQGNGGSGASPWAGAATAL--RIQAAKQLTGRVVTTKADKTVGVEVVRLAPHPKY 68

Query: 92  KRRIRIKKKYQAHDPDNQFQVGDFVELEKCRPISKMKTFLAIPVPARNSKKKAVEGGEGG 151
           KRR RIKKKYQAHDPDNQF+VGD VEL + RPISK K FLA+P+P R++++K+       
Sbjct: 69  KRRERIKKKYQAHDPDNQFKVGDVVELRRSRPISKTKHFLAVPLPPRDTRRKS------- 128

Query: 152 ELGIPLESQQE 163
           +L  PL+SQ +
Sbjct: 129 QLLPPLQSQSQ 130

[Close]

BLAST of CsGy7G019840 vs. NCBI nr
Match: XP_004141765.1 (30S ribosomal protein S17, chloroplastic [Cucumis sativus] >KGN45384.1 hypothetical protein Csa_015845 [Cucumis sativus])

HSP 1 Score: 311 bits (798), Expect = 1.03e-106
Identity = 164/164 (100.00%), Postives = 164/164 (100.00%), Query Frame = 0


Query: 1   MSITLTSSSLLQIPPVQSLKKLSISSSFLHGSTPLSFLSKPSSSSSPFPSQTPNFLPSIR 60
           MSITLTSSSLLQIPPVQSLKKLSISSSFLHGSTPLSFLSKPSSSSSPFPSQTPNFLPSIR
Sbjct: 1   MSITLTSSSLLQIPPVQSLKKLSISSSFLHGSTPLSFLSKPSSSSSPFPSQTPNFLPSIR 60

Query: 61  AMRSLQGRVVCATNDKTVAVEVVRLAPHPKYKRRIRIKKKYQAHDPDNQFQVGDFVELEK 120
           AMRSLQGRVVCATNDKTVAVEVVRLAPHPKYKRRIRIKKKYQAHDPDNQFQVGDFVELEK
Sbjct: 61  AMRSLQGRVVCATNDKTVAVEVVRLAPHPKYKRRIRIKKKYQAHDPDNQFQVGDFVELEK 120

Query: 121 CRPISKMKTFLAIPVPARNSKKKAVEGGEGGELGIPLESQQEQV 164
           CRPISKMKTFLAIPVPARNSKKKAVEGGEGGELGIPLESQQEQV
Sbjct: 121 CRPISKMKTFLAIPVPARNSKKKAVEGGEGGELGIPLESQQEQV 164

[Close]

BLAST of CsGy7G019840 vs. NCBI nr
Match: XP_008462167.1 (PREDICTED: 30S ribosomal protein S17, chloroplastic [Cucumis melo])

HSP 1 Score: 296 bits (757), Expect = 1.84e-100
Identity = 156/164 (95.12%), Postives = 158/164 (96.34%), Query Frame = 0


Query: 1   MSITLTSSSLLQIPPVQSLKKLSISSSFLHGSTPLSFLSKPSSSSSPFPSQTPNFLPSIR 60
           MS TLTSSSLLQIPP+QSLKKLSISSSFLHGSTPLSFLSKPSSS SP  SQTPNFLPSIR
Sbjct: 1   MSTTLTSSSLLQIPPLQSLKKLSISSSFLHGSTPLSFLSKPSSSPSPLASQTPNFLPSIR 60

Query: 61  AMRSLQGRVVCATNDKTVAVEVVRLAPHPKYKRRIRIKKKYQAHDPDNQFQVGDFVELEK 120
           AMRSLQGRVVCATNDKTVAVEVVRLAPHPKYKRRIRIKKKYQAHDPDNQF+VGDFVELEK
Sbjct: 61  AMRSLQGRVVCATNDKTVAVEVVRLAPHPKYKRRIRIKKKYQAHDPDNQFKVGDFVELEK 120

Query: 121 CRPISKMKTFLAIPVPARNSKKKAVEGGEGGELGIPLESQQEQV 164
           CRPISKMKTFLAIPVPAR SKKKA EGGEGGELGIPLESQQEQV
Sbjct: 121 CRPISKMKTFLAIPVPARTSKKKAAEGGEGGELGIPLESQQEQV 164

[Close]

BLAST of CsGy7G019840 vs. NCBI nr
Match: KAA0059310.1 (30S ribosomal protein S17 [Cucumis melo var. makuwa] >TYK04018.1 30S ribosomal protein S17 [Cucumis melo var. makuwa])

HSP 1 Score: 293 bits (749), Expect = 3.04e-99
Identity = 155/164 (94.51%), Postives = 157/164 (95.73%), Query Frame = 0


Query: 1   MSITLTSSSLLQIPPVQSLKKLSISSSFLHGSTPLSFLSKPSSSSSPFPSQTPNFLPSIR 60
           MS TLTSSSLLQIPP+QSLKKLSISSSFLHGSTPLSFLSK SSS SP  SQTPNFLPSIR
Sbjct: 1   MSTTLTSSSLLQIPPLQSLKKLSISSSFLHGSTPLSFLSKASSSPSPLASQTPNFLPSIR 60

Query: 61  AMRSLQGRVVCATNDKTVAVEVVRLAPHPKYKRRIRIKKKYQAHDPDNQFQVGDFVELEK 120
           AMRSLQGRVVCATNDKTVAVEVVRLAPHPKYKRRIRIKKKYQAHDPDNQF+VGDFVELEK
Sbjct: 61  AMRSLQGRVVCATNDKTVAVEVVRLAPHPKYKRRIRIKKKYQAHDPDNQFKVGDFVELEK 120

Query: 121 CRPISKMKTFLAIPVPARNSKKKAVEGGEGGELGIPLESQQEQV 164
           CRPISKMKTFLAIPVPAR SKKKA EGGEGGELGIPLESQQEQV
Sbjct: 121 CRPISKMKTFLAIPVPARTSKKKAAEGGEGGELGIPLESQQEQV 164

[Close]

BLAST of CsGy7G019840 vs. NCBI nr
Match: XP_038898716.1 (30S ribosomal protein S17, chloroplastic [Benincasa hispida])

HSP 1 Score: 263 bits (671), Expect = 7.71e-87
Identity = 143/164 (87.20%), Postives = 149/164 (90.85%), Query Frame = 0


Query: 1   MSITLTSSSLLQIPPVQSLKKLSISSSFLHGSTPLSFLSKPSSSSSPFPSQTPNFLPSIR 60
           MS TLTSSSLLQIPP+Q LKKLSIS+SFLHGS+PL F SKPS    P   QTPNFLPSIR
Sbjct: 41  MSATLTSSSLLQIPPLQRLKKLSISTSFLHGSSPLPFHSKPS----PSAFQTPNFLPSIR 100

Query: 61  AMRSLQGRVVCATNDKTVAVEVVRLAPHPKYKRRIRIKKKYQAHDPDNQFQVGDFVELEK 120
           AMRSLQGRVVCATNDKTVAVEVVRLAPHPKYKRRIRIKKKYQAHDPDNQF+VGDFVELEK
Sbjct: 101 AMRSLQGRVVCATNDKTVAVEVVRLAPHPKYKRRIRIKKKYQAHDPDNQFKVGDFVELEK 160

Query: 121 CRPISKMKTFLAIPVPARNSKKKAVEGGEGGELGIPLESQQEQV 164
           CRPISKMKTFLAIPVP R+SKKKA E G+G ELGIPLESQQEQV
Sbjct: 161 CRPISKMKTFLAIPVPERSSKKKAAEDGDG-ELGIPLESQQEQV 199

[Close]

BLAST of CsGy7G019840 vs. NCBI nr
Match: XP_023548191.1 (30S ribosomal protein S17, chloroplastic-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 255 bits (651), Expect = 2.29e-84
Identity = 138/162 (85.19%), Postives = 146/162 (90.12%), Query Frame = 0


Query: 1   MSITLTSSSLLQIPPVQSLKKLSISSSFLHGSTPLSFLSKPSSSSSPFPSQTPNFLPSIR 60
           MS TL+ SS LQIPP+Q LK LS+S+SFLHGS PLSFLSKPS S S   SQTPNFLPSI+
Sbjct: 1   MSATLSPSSFLQIPPLQRLKNLSVSTSFLHGSVPLSFLSKPSPSLSA--SQTPNFLPSIK 60

Query: 61  AMRSLQGRVVCATNDKTVAVEVVRLAPHPKYKRRIRIKKKYQAHDPDNQFQVGDFVELEK 120
           AMRSLQGRVVCATNDKTVAVEVVRLAPHPKYKRRIRIKKKYQAHDPDN+F+VGDFVELEK
Sbjct: 61  AMRSLQGRVVCATNDKTVAVEVVRLAPHPKYKRRIRIKKKYQAHDPDNKFKVGDFVELEK 120

Query: 121 CRPISKMKTFLAIPVPARNSKKKAVEGGEGGELGIPLESQQE 162
           CRPISKMKTFLAIPVPARNSK KA E G  GELGIPLESQQ+
Sbjct: 121 CRPISKMKTFLAIPVPARNSKPKAAEAG-AGELGIPLESQQQ 159

[Close]

BLAST of CsGy7G019840 vs. ExPASy TrEMBL
Match: A0A0A0K952 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G446990 PE=3 SV=1)

HSP 1 Score: 311 bits (798), Expect = 4.98e-107
Identity = 164/164 (100.00%), Postives = 164/164 (100.00%), Query Frame = 0


Query: 1   MSITLTSSSLLQIPPVQSLKKLSISSSFLHGSTPLSFLSKPSSSSSPFPSQTPNFLPSIR 60
           MSITLTSSSLLQIPPVQSLKKLSISSSFLHGSTPLSFLSKPSSSSSPFPSQTPNFLPSIR
Sbjct: 1   MSITLTSSSLLQIPPVQSLKKLSISSSFLHGSTPLSFLSKPSSSSSPFPSQTPNFLPSIR 60

Query: 61  AMRSLQGRVVCATNDKTVAVEVVRLAPHPKYKRRIRIKKKYQAHDPDNQFQVGDFVELEK 120
           AMRSLQGRVVCATNDKTVAVEVVRLAPHPKYKRRIRIKKKYQAHDPDNQFQVGDFVELEK
Sbjct: 61  AMRSLQGRVVCATNDKTVAVEVVRLAPHPKYKRRIRIKKKYQAHDPDNQFQVGDFVELEK 120

Query: 121 CRPISKMKTFLAIPVPARNSKKKAVEGGEGGELGIPLESQQEQV 164
           CRPISKMKTFLAIPVPARNSKKKAVEGGEGGELGIPLESQQEQV
Sbjct: 121 CRPISKMKTFLAIPVPARNSKKKAVEGGEGGELGIPLESQQEQV 164

[Close]

BLAST of CsGy7G019840 vs. ExPASy TrEMBL
Match: A0A1S3CGC8 (30S ribosomal protein S17, chloroplastic OS=Cucumis melo OX=3656 GN=LOC103500591 PE=3 SV=1)

HSP 1 Score: 296 bits (757), Expect = 8.89e-101
Identity = 156/164 (95.12%), Postives = 158/164 (96.34%), Query Frame = 0


Query: 1   MSITLTSSSLLQIPPVQSLKKLSISSSFLHGSTPLSFLSKPSSSSSPFPSQTPNFLPSIR 60
           MS TLTSSSLLQIPP+QSLKKLSISSSFLHGSTPLSFLSKPSSS SP  SQTPNFLPSIR
Sbjct: 1   MSTTLTSSSLLQIPPLQSLKKLSISSSFLHGSTPLSFLSKPSSSPSPLASQTPNFLPSIR 60

Query: 61  AMRSLQGRVVCATNDKTVAVEVVRLAPHPKYKRRIRIKKKYQAHDPDNQFQVGDFVELEK 120
           AMRSLQGRVVCATNDKTVAVEVVRLAPHPKYKRRIRIKKKYQAHDPDNQF+VGDFVELEK
Sbjct: 61  AMRSLQGRVVCATNDKTVAVEVVRLAPHPKYKRRIRIKKKYQAHDPDNQFKVGDFVELEK 120

Query: 121 CRPISKMKTFLAIPVPARNSKKKAVEGGEGGELGIPLESQQEQV 164
           CRPISKMKTFLAIPVPAR SKKKA EGGEGGELGIPLESQQEQV
Sbjct: 121 CRPISKMKTFLAIPVPARTSKKKAAEGGEGGELGIPLESQQEQV 164

[Close]

BLAST of CsGy7G019840 vs. ExPASy TrEMBL
Match: A0A5A7UW29 (30S ribosomal protein S17, chloroplastic OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold347G002170 PE=3 SV=1)

HSP 1 Score: 293 bits (749), Expect = 1.47e-99
Identity = 155/164 (94.51%), Postives = 157/164 (95.73%), Query Frame = 0


Query: 1   MSITLTSSSLLQIPPVQSLKKLSISSSFLHGSTPLSFLSKPSSSSSPFPSQTPNFLPSIR 60
           MS TLTSSSLLQIPP+QSLKKLSISSSFLHGSTPLSFLSK SSS SP  SQTPNFLPSIR
Sbjct: 1   MSTTLTSSSLLQIPPLQSLKKLSISSSFLHGSTPLSFLSKASSSPSPLASQTPNFLPSIR 60

Query: 61  AMRSLQGRVVCATNDKTVAVEVVRLAPHPKYKRRIRIKKKYQAHDPDNQFQVGDFVELEK 120
           AMRSLQGRVVCATNDKTVAVEVVRLAPHPKYKRRIRIKKKYQAHDPDNQF+VGDFVELEK
Sbjct: 61  AMRSLQGRVVCATNDKTVAVEVVRLAPHPKYKRRIRIKKKYQAHDPDNQFKVGDFVELEK 120

Query: 121 CRPISKMKTFLAIPVPARNSKKKAVEGGEGGELGIPLESQQEQV 164
           CRPISKMKTFLAIPVPAR SKKKA EGGEGGELGIPLESQQEQV
Sbjct: 121 CRPISKMKTFLAIPVPARTSKKKAAEGGEGGELGIPLESQQEQV 164

[Close]

BLAST of CsGy7G019840 vs. ExPASy TrEMBL
Match: A0A6J1JVM9 (30S ribosomal protein S17, chloroplastic-like OS=Cucurbita maxima OX=3661 GN=LOC111488732 PE=3 SV=1)

HSP 1 Score: 252 bits (644), Expect = 1.29e-83
Identity = 138/162 (85.19%), Postives = 145/162 (89.51%), Query Frame = 0


Query: 1   MSITLTSSSLLQIPPVQSLKKLSISSSFLHGSTPLSFLSKPSSSSSPFPSQTPNFLPSIR 60
           MS TL+ SS LQIPP+Q LK LS+S+SFLHGS PLSFLSKPS S S   SQTPNFLPSIR
Sbjct: 1   MSATLSHSSFLQIPPLQRLKNLSVSTSFLHGSVPLSFLSKPSPSLSA--SQTPNFLPSIR 60

Query: 61  AMRSLQGRVVCATNDKTVAVEVVRLAPHPKYKRRIRIKKKYQAHDPDNQFQVGDFVELEK 120
           AMRSLQGRVVCATNDKTVAVEVVRLAPHPKYKRRIRIKKKYQAHDPDN+F+VGDFVELEK
Sbjct: 61  AMRSLQGRVVCATNDKTVAVEVVRLAPHPKYKRRIRIKKKYQAHDPDNKFKVGDFVELEK 120

Query: 121 CRPISKMKTFLAIPVPARNSKKKAVEGGEGGELGIPLESQQE 162
           CRPISKMKTFLAIPVPARNSK KA E G G EL IPLESQQ+
Sbjct: 121 CRPISKMKTFLAIPVPARNSKPKAAEAGVG-ELEIPLESQQQ 159

[Close]

BLAST of CsGy7G019840 vs. ExPASy TrEMBL
Match: A0A6J1KMI9 (30S ribosomal protein S17, chloroplastic OS=Cucurbita maxima OX=3661 GN=LOC111494663 PE=3 SV=1)

HSP 1 Score: 250 bits (639), Expect = 6.98e-83
Identity = 133/159 (83.65%), Postives = 143/159 (89.94%), Query Frame = 0


Query: 4   TLTSSSLLQIPPVQSLKKLSISSSFLHGSTPLSFLSKPSSSSSPFPSQTPNFLPSIRAMR 63
           TLT SS+LQIPP+Q  KKLS+S+SFLHGSTPLSFLSKP+    P P QT NFLPSIRAM+
Sbjct: 4   TLTPSSVLQIPPLQRFKKLSLSTSFLHGSTPLSFLSKPA----PSPPQTLNFLPSIRAMK 63

Query: 64  SLQGRVVCATNDKTVAVEVVRLAPHPKYKRRIRIKKKYQAHDPDNQFQVGDFVELEKCRP 123
           SLQGRVVCATNDKTVAVEVVRLAPHPKYKRRIRIKKKYQAHDPDNQF+VGDFVELEKCRP
Sbjct: 64  SLQGRVVCATNDKTVAVEVVRLAPHPKYKRRIRIKKKYQAHDPDNQFKVGDFVELEKCRP 123

Query: 124 ISKMKTFLAIPVPARNSKKKAVEGGEGGELGIPLESQQE 162
           ISKMKTFLAIPVPARNSK+K  E    G+LGIPLESQQ+
Sbjct: 124 ISKMKTFLAIPVPARNSKQKVAEAA-AGDLGIPLESQQQ 157

[Close]

BLAST of CsGy7G019840 vs. TAIR 10
Match: AT1G79850.1 (ribosomal protein S17 )

HSP 1 Score: 179.1 bits (453), Expect = 2.9e-45
Identity = 98/145 (67.59%), Postives = 117/145 (80.69%), Query Frame = 0


Query: 18  SLKKLSISSSFLHGSTPLSFLSKPSSSSSPFPS-QTPNFLPSIRAMRSLQGRVVCATNDK 77
           SL+ L +SS F HGSTPLS LSKP+S    FP+ + P  +P IRAM+++QGRVVCAT+DK
Sbjct: 9   SLQALKLSSPFAHGSTPLSSLSKPNS----FPNHRMPALVPVIRAMKTMQGRVVCATSDK 68

Query: 78  TVAVEVVRLAPHPKYKRRIRIKKKYQAHDPDNQFQVGDFVELEKCRPISKMKTFLAIPVP 137
           TVAVEVVRLAPHPKYKRR+R+KKKYQAHDPDNQF+VGD V LEK RPISK K+F+A+PV 
Sbjct: 69  TVAVEVVRLAPHPKYKRRVRMKKKYQAHDPDNQFKVGDVVRLEKSRPISKTKSFVALPVI 128

Query: 138 ARNSKKKAVEGGEGGELGIPLESQQ 162
           AR ++K   E G    LG+PLESQQ
Sbjct: 129 ARAARK--AEAGGDELLGLPLESQQ 147

[Close]

BLAST of CsGy7G019840 vs. TAIR 10
Match: AT1G49400.1 (Nucleic acid-binding, OB-fold-like protein )

HSP 1 Score: 46.2 bits (108), Expect = 2.9e-05
Identity = 25/74 (33.78%), Postives = 40/74 (54.05%), Query Frame = 0


Query: 62  MRSLQGRVVCATNDKTVAVEVVRLAPHPKYKRRIRIKKKYQAHDPDNQFQVGDFVELEKC 121
           M+ + G VV     K+V V V RL  +  Y R ++   K+ AHD  +   +GD V+L+  
Sbjct: 1   MKPVIGTVVSNKMQKSVVVAVDRLFHNKIYNRYVKRTSKFMAHDDKDACNIGDRVKLDPS 60

Query: 122 RPISKMKTFLAIPV 136
           RP+SK K ++   +
Sbjct: 61  RPLSKNKHWIVAEI 74

[Close]

BLAST of CsGy7G019840 vs. TAIR 10
Match: AT3G18880.1 (Nucleic acid-binding, OB-fold-like protein )

HSP 1 Score: 44.3 bits (103), Expect = 1.1e-04
Identity = 24/70 (34.29%), Postives = 39/70 (55.71%), Query Frame = 0


Query: 62  MRSLQGRVVCATNDKTVAVEVVRLAPHPKYKRRIRIKKKYQAHDPDNQFQVGDFVELEKC 121
           M+++ G VV      +V V V RL  +  Y R ++   K+ AHD  +   +GD V+L+  
Sbjct: 1   MKAVIGTVVSNKMQMSVVVAVDRLFHNNIYNRYVKRTSKFMAHDEKDSCNIGDRVKLDPS 60

Query: 122 RPISKMKTFL 132
           RP+SK K ++
Sbjct: 61  RPLSKHKHWI 70

The following BLAST results are available for this feature:

BLAST of CsGy7G019840 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
P16180	4.1e-44	67.59	30S ribosomal protein S17, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=RPS1...	[more]
P82137	4.4e-38	60.12	30S ribosomal protein S17, chloroplastic OS=Spinacia oleracea OX=3562 GN=RPS17 P...	[more]
P17092	4.5e-35	60.16	30S ribosomal protein S17, chloroplastic (Fragment) OS=Pisum sativum OX=3888 GN=...	[more]
Q9TJN6	4.1e-28	57.69	30S ribosomal protein S17, chloroplastic OS=Zea mays OX=4577 GN=RPS17 PE=2 SV=1	[more]
Q9ZST1	2.0e-27	53.44	30S ribosomal protein S17, chloroplastic OS=Oryza sativa subsp. japonica OX=3994...	[more]

BLAST of CsGy7G019840 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_004141765.1	1.03e-106	100.00	30S ribosomal protein S17, chloroplastic [Cucumis sativus] >KGN45384.1 hypotheti...	[more]
XP_008462167.1	1.84e-100	95.12	PREDICTED: 30S ribosomal protein S17, chloroplastic [Cucumis melo]	[more]
KAA0059310.1	3.04e-99	94.51	30S ribosomal protein S17 [Cucumis melo var. makuwa] >TYK04018.1 30S ribosomal p...	[more]
XP_038898716.1	7.71e-87	87.20	30S ribosomal protein S17, chloroplastic [Benincasa hispida]	[more]
XP_023548191.1	2.29e-84	85.19	30S ribosomal protein S17, chloroplastic-like [Cucurbita pepo subsp. pepo]	[more]

BLAST of CsGy7G019840 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0K952	4.98e-107	100.00	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G446990 PE=3 SV=1	[more]
A0A1S3CGC8	8.89e-101	95.12	30S ribosomal protein S17, chloroplastic OS=Cucumis melo OX=3656 GN=LOC103500591...	[more]
A0A5A7UW29	1.47e-99	94.51	30S ribosomal protein S17, chloroplastic OS=Cucumis melo var. makuwa OX=1194695 ...	[more]
A0A6J1JVM9	1.29e-83	85.19	30S ribosomal protein S17, chloroplastic-like OS=Cucurbita maxima OX=3661 GN=LOC...	[more]
A0A6J1KMI9	6.98e-83	83.65	30S ribosomal protein S17, chloroplastic OS=Cucurbita maxima OX=3661 GN=LOC11149...	[more]

BLAST of CsGy7G019840 vs. TAIR 10


Match Name	E-value	Identity	Description
AT1G79850.1	2.9e-45	67.59	ribosomal protein S17	[more]
AT1G49400.1	2.9e-05	33.78	Nucleic acid-binding, OB-fold-like protein	[more]
AT3G18880.1	1.1e-04	34.29	Nucleic acid-binding, OB-fold-like protein	[more]

InterPro

Analysis Name: InterPro Annotations of Cucumber (Gy14) v2.1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR000266	Ribosomal protein S17/S11	PRINTS	PR00973	RIBOSOMALS17	coord: 113..123 score: 52.55 coord: 81..104 score: 34.25 coord: 123..130 score: 52.75
IPR000266	Ribosomal protein S17/S11	PFAM	PF00366	Ribosomal_S17	coord: 67..130 e-value: 8.4E-24 score: 83.5
IPR000266	Ribosomal protein S17/S11	PANTHER	PTHR10744	40S RIBOSOMAL PROTEIN S11 FAMILY MEMBER	coord: 33..163
None	No IPR available	GENE3D	2.40.50.140		coord: 61..149 e-value: 9.8E-25 score: 88.3
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 140..164
None	No IPR available	PANTHER	PTHR10744:SF7	30S RIBOSOMAL PROTEIN S17, CHLOROPLASTIC	coord: 33..163
IPR019979	Ribosomal protein S17, conserved site	PROSITE	PS00056	RIBOSOMAL_S17	coord: 113..125
IPR012340	Nucleic acid-binding, OB-fold	SUPERFAMILY	50249	Nucleic acid-binding proteins	coord: 62..138

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CsGy7G019840.2	CsGy7G019840.2	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0032544	plastid translation
biological_process	GO:0006412	translation
cellular_component	GO:0009507	chloroplast
cellular_component	GO:0005739	mitochondrion
cellular_component	GO:0005840	ribosome
molecular_function	GO:0003729	mRNA binding
molecular_function	GO:0019843	rRNA binding
molecular_function	GO:0003735	structural constituent of ribosome