CsGy7G017850 (gene) Cucumber (Gy14) v2.1

Overview


Name	CsGy7G017850
Type	gene
Organism	Cucumis sativus L. var. sativus cv. Gy14 (Cucumber (Gy14) v2.1)
Description	30S ribosomal protein 2, chloroplastic
Location	Gy14Chr7: 21028068 .. 21030792 (+)
RNA-Seq Expression	CsGy7G017850
Synteny	CsGy7G017850

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRexonCDSpolypeptidethree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

GAAGAGATGGCACGTGCGGACAGCACAAGATTAGCTCAATCTCTTCTTCTTCTTCTTGTCGACTGGATAAACCTCTGGCCACGCCTCAGGGTTCTGTGCTTTCTTCTCTCTGTTCTCTCAAGCTCTCCACAACAAAAATGGCTTCCATCTCATCCATATTAACCCCTACCAATCTCATTCACAGCTCCAAAAAACCCACAGATATCCCACAAACTTTATCCTCTCAATTTCTCCGACCAATCTCCTTTCACCCTCCTCATATCCTTCTCCGCATCTCTCCCGTCGCCGCCAAACCCCCCACCAGACTTTTCGCCGTTGCAGAAGTGGCGACGCAGGGTGCCAGTTCGGTGGCGGAAAGGAAATTGTACATTGGGAATATACCTAGAAATGTGAATAATGAGGAGCTTACTCGGATTGTCCAAGAACATGGGGCTGTGGAGAAGGCTGAAGTGAGTAATTTCTGCTTGGATTTGTTATTTTTTATTTTATTTTTTCATTTTCCTCTTTTGGGTATCCTGAAATTTGTTTTATACCATGCGTCGTATTGTTGATTTTGAGGCTTGCTGGATTCTCCAGGGTTTATACGTGCTTAGTTTGTTTTGAACCTTTGCATTGATTGAGTTTACTTGTTTATAAATTCATCAAAACTGCTGAATGTAGTTTCATTTTGGGCTGAATTTGTCTACCCTTTACTTCCTGAATGTTGTTTGGACAAGCTATTGAGGGTTCTTTTACATTTGAAGTTGGATTGGTTCTTGTCATCTGTAATTTGAGCTCTAGAATACGATAAGATATACTTCGATTCTTGCTAAAGTAACTCTAGTTTAAATCTACGAGTGCATGTCAATTACTGTTAAAACTGTGCTTTCTTTGGGCGAGATAACACTTGGTAATTTATGTTTATTGCTTATTTGTAATTTCCTTTCCAAAATGTGCTCTCCAACTTGAATATCTTATGCCATATGGTCATTTTGAAAAACTAGCTAATTTTTTCTCTTGAACTCCGAGGCAAAGCACTTGAACCGAACGGTCCTTTAAATCAAGTAGCTAGCAGCAACATTTTTATTTTTTTTAATGAATTAGCTCTTGCAATCTATTGATTTCAAGAATTCTAGCATCCCTTTGTTCTTAATCTTCACTTGGTAACTGTTGGTGTTGGCCTTAAGAATCTTATTTTGTTCCATTTCCAGGTCATGTATGACAAGTACTCTGGGAGAAGCCGCAGATTCGCCTTTGTTACTATGAAAACAGTTGAAGACGCAAATGCAGCAATTGAGAAACTGAATGAGACAGTGAGTTCATTTTAATATCTAGTTATCTACAAAGTGCAACAACAATTGAAAAGAAAAGAGAACGAAGGAATTGTTTCTTACCGTTGACTAGATGGATTGATTATACTGACAATGTTTGTTTAATGGCAGGAAGTCGGAGGACGTAAAATTAAAGTCAACATAACAGAAAAACCTGTTGTTAATACAGTTGACATGTCATTTCTTCAGGCAGAGGAATCTCAATTCATTGACAGTCCTTACAAAGTATATGTAGGAAACATTTCGAGTACAGTTTCTACAGAAACACTCAAAAACTTCTTTTCTGAGAAGGGTAAAGTTCTCAGTGCGAAGGTTTCACGGGTTCCAGGTACCTCGAAATCAAGTGGCTACGGTTTTGTTACCTTCTCTTCAGAGGAGGAAGTCGACGCTGCCATTTCATCTTTTAACAATGCTGTAAGTAACTTGCTTCGGTTCTCATATGATTCATATCTAAATGCTGTGGCTCCGATATCGGTCTATGCACACTCCACCTCACTTTTTAGTCCCTATCACATAATGTCCCATGGTTTAAGTTTCATGCATTGGCAACACTCTTGCTCCTGTTTAGTTGGCACTGTCTAGTAGAGAATTCCTTGTTTCACTTTATGTTCTTCAGTAACAGTTTGGTTAAAATAGGTAGCCCTCAAAAGATTTGGAAGAAAATTATAATTTAGTCTCTATAGTTAAATAGTTTAAAAGTTATTTAACTACTACAATGACTATATAATTTTATTAAATGATGACTATATAATTTTATTAAATGATGACTTTATAATTTTATTAAATAATTGGTCAAGGGTTCAATCCGCAGTGGCCACTTATCTAGAAATTAATTTTCTACAAATTTTTTTTTTACATCCAAATGTTATAAAGTTGATCCAGTAAAACCATAGGGACGGAACAATCATGGATATAAAAATAATATAAAATAACAATTTACCAAATGATTGAGACTATTTATGTGAATAGTTATAGGTAACTAAACATTTCTAATCACAAACTTGCTTGAAACTTTTCTTAAACTAGTTGACTGATAGGTATTACCAACTTGAATGTCTAATTGATATTACCTTATGAATGGATGAGCTACGCTCTGAAAGATGATGGCATTTTAACCTGAAACATCTAATACATCTTTTATTTTCAAATTCTTACGAGAAGCTTGTGTTTCTGATATGTTTTTCTTTGCTGCAGTTGTTGGAAGGCCAACCAATCCGTGTAAACAAGGCCTAAATTTTGTAGGGTTCTATGTAACAAAAATGTTTGGAAGTTTCACTTTTGCCTCTTGGAATGAAATTGATGAACAGCAGAGGGCAGTTTTTTCACGCAATTTCTGTATTCATATCACTAATGTATAATCTTGTTTATTTTTCTGTTTAAGCATCAAATCTTAACTTAGCTAGACTTTAAAATGC

mRNA sequence

GAAGAGATGGCACGTGCGGACAGCACAAGATTAGCTCAATCTCTTCTTCTTCTTCTTGTCGACTGGATAAACCTCTGGCCACGCCTCAGGGTTCTGTGCTTTCTTCTCTCTGTTCTCTCAAGCTCTCCACAACAAAAATGGCTTCCATCTCATCCATATTAACCCCTACCAATCTCATTCACAGCTCCAAAAAACCCACAGATATCCCACAAACTTTATCCTCTCAATTTCTCCGACCAATCTCCTTTCACCCTCCTCATATCCTTCTCCGCATCTCTCCCGTCGCCGCCAAACCCCCCACCAGACTTTTCGCCGTTGCAGAAGTGGCGACGCAGGGTGCCAGTTCGGTGGCGGAAAGGAAATTGTACATTGGGAATATACCTAGAAATGTGAATAATGAGGAGCTTACTCGGATTGTCCAAGAACATGGGGCTGTGGAGAAGGCTGAAGTCATGTATGACAAGTACTCTGGGAGAAGCCGCAGATTCGCCTTTGTTACTATGAAAACAGTTGAAGACGCAAATGCAGCAATTGAGAAACTGAATGAGACAGAAGTCGGAGGACGTAAAATTAAAGTCAACATAACAGAAAAACCTGTTGTTAATACAGTTGACATGTCATTTCTTCAGGCAGAGGAATCTCAATTCATTGACAGTCCTTACAAAGTATATGTAGGAAACATTTCGAGTACAGTTTCTACAGAAACACTCAAAAACTTCTTTTCTGAGAAGGGTAAAGTTCTCAGTGCGAAGGTTTCACGGGTTCCAGGTACCTCGAAATCAAGTGGCTACGGTTTTGTTACCTTCTCTTCAGAGGAGGAAGTCGACGCTGCCATTTCATCTTTTAACAATGCTTTGTTGGAAGGCCAACCAATCCGTGTAAACAAGGCCTAAATTTTGTAGGGTTCTATGTAACAAAAATGTTTGGAAGTTTCACTTTTGCCTCTTGGAATGAAATTGATGAACAGCAGAGGGCAGTTTTTTCACGCAATTTCTGTATTCATATCACTAATGTATAATCTTGTTTATTTTTCTGTTTAAGCATCAAATCTTAACTTAGCTAGACTTTAAAATGC

Coding sequence (CDS)

ATGGCTTCCATCTCATCCATATTAACCCCTACCAATCTCATTCACAGCTCCAAAAAACCCACAGATATCCCACAAACTTTATCCTCTCAATTTCTCCGACCAATCTCCTTTCACCCTCCTCATATCCTTCTCCGCATCTCTCCCGTCGCCGCCAAACCCCCCACCAGACTTTTCGCCGTTGCAGAAGTGGCGACGCAGGGTGCCAGTTCGGTGGCGGAAAGGAAATTGTACATTGGGAATATACCTAGAAATGTGAATAATGAGGAGCTTACTCGGATTGTCCAAGAACATGGGGCTGTGGAGAAGGCTGAAGTCATGTATGACAAGTACTCTGGGAGAAGCCGCAGATTCGCCTTTGTTACTATGAAAACAGTTGAAGACGCAAATGCAGCAATTGAGAAACTGAATGAGACAGAAGTCGGAGGACGTAAAATTAAAGTCAACATAACAGAAAAACCTGTTGTTAATACAGTTGACATGTCATTTCTTCAGGCAGAGGAATCTCAATTCATTGACAGTCCTTACAAAGTATATGTAGGAAACATTTCGAGTACAGTTTCTACAGAAACACTCAAAAACTTCTTTTCTGAGAAGGGTAAAGTTCTCAGTGCGAAGGTTTCACGGGTTCCAGGTACCTCGAAATCAAGTGGCTACGGTTTTGTTACCTTCTCTTCAGAGGAGGAAGTCGACGCTGCCATTTCATCTTTTAACAATGCTTTGTTGGAAGGCCAACCAATCCGTGTAAACAAGGCCTAA

Protein sequence

MASISSILTPTNLIHSSKKPTDIPQTLSSQFLRPISFHPPHILLRISPVAAKPPTRLFAVAEVATQGASSVAERKLYIGNIPRNVNNEELTRIVQEHGAVEKAEVMYDKYSGRSRRFAFVTMKTVEDANAAIEKLNETEVGGRKIKVNITEKPVVNTVDMSFLQAEESQFIDSPYKVYVGNISSTVSTETLKNFFSEKGKVLSAKVSRVPGTSKSSGYGFVTFSSEEEVDAAISSFNNALLEGQPIRVNKA*

Homology

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BLAST of CsGy7G017850 vs. ExPASy Swiss-Prot
Match: P82277 (30S ribosomal protein 2, chloroplastic OS=Spinacia oleracea OX=3562 GN=PSRP2 PE=1 SV=1)

HSP 1 Score: 273.1 bits (697), Expect = 3.2e-72
Identity = 156/263 (59.32%), Postives = 193/263 (73.38%), Query Frame = 0


Query: 1   MASISSILTPTNLIH--SSKKPTDIPQTLSSQFLRPISFHPPHILLRISPVAAKPPTRLF 60
           MA+ISSIL    L+   SS   +  P+  S   ++  SF     L   + V+  PP  L 
Sbjct: 1   MATISSILPCHGLLQHCSSSSSSSKPKFSSQNLVQLQSFSNGFGLKLKTRVSTNPP--LL 60

Query: 61  AVAEVATQGASSVA----------ERKLYIGNIPRNVNNEELTRIVQEHGAVEKAEVMYD 120
            V  V T+  SS +           R+LY+GNIPRN+NN+EL  IV+EHGA+E AEVMYD
Sbjct: 61  KVRAVVTEETSSSSTASSSSDGEGARRLYVGNIPRNLNNDELRTIVEEHGAIEIAEVMYD 120

Query: 121 KYSGRSRRFAFVTMKTVEDANAAIEKLNETEVGGRKIKVNITEKPVVNTVDMSFLQAEES 180
           KYSGRSRRF FVTMKTVEDANA IEKLN+TE+GGRKIKVNITEKP +  +D++  QAE+S
Sbjct: 121 KYSGRSRRFGFVTMKTVEDANAVIEKLNDTEIGGRKIKVNITEKP-LEGMDIATTQAEDS 180

Query: 181 QFIDSPYKVYVGNISSTVSTETLKNFFSEKGKVLSAKVSRVPGTSKSSGYGFVTFSSEEE 240
           QF++SPYKVY+GN++ TV+ E LK+FFSEKGKVL AKV R PGTSKS+G+GFV+FSSEEE
Sbjct: 181 QFVESPYKVYIGNLAKTVTNELLKDFFSEKGKVLGAKVQRTPGTSKSNGFGFVSFSSEEE 240

Query: 241 VDAAISSFNNALLEGQPIRVNKA 252
           V+AAI + NN++LEGQ IRVNKA
Sbjct: 241 VEAAIQALNNSVLEGQKIRVNKA 260

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BLAST of CsGy7G017850 vs. ExPASy Swiss-Prot
Match: Q8VYM4 (30S ribosomal protein 2, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=PSRP2 PE=2 SV=1)

HSP 1 Score: 266.9 bits (681), Expect = 2.3e-70
Identity = 136/198 (68.69%), Postives = 166/198 (83.84%), Query Frame = 0


Query: 58  FAVAEVATQGA----SSVAERKLYIGNIPRNVNNEELTRIVQEHGAVEKAEVMYDKYSGR 117
           +AV E   + A    SS A R++YIGNIPR V NE+LT++V+EHGAVEK +VMYDKYSGR
Sbjct: 56  YAVTETEEKPAALDPSSEAARRVYIGNIPRTVTNEQLTKLVEEHGAVEKVQVMYDKYSGR 115

Query: 118 SRRFAFVTMKTVEDANAAIEKLNETEVGGRKIKVNITEKPVVNTVDMSFLQAEESQFIDS 177
           SRRF F TMK+VEDANA +EKLN   V GR+IKVNITEKP+ ++ D+S LQ+E+S F+DS
Sbjct: 116 SRRFGFATMKSVEDANAVVEKLNGNTVEGREIKVNITEKPIASSPDLSVLQSEDSAFVDS 175

Query: 178 PYKVYVGNISSTVSTETLKNFFSEKGKVLSAKVSRVPGTSKSSGYGFVTFSSEEEVDAAI 237
           PYKVYVGN++ TV+ E L+N FSEKGKV+SAKVSRVPGTSKS+G+GFVTFSSEE+V+AAI
Sbjct: 176 PYKVYVGNLAKTVTKEMLENLFSEKGKVVSAKVSRVPGTSKSTGFGFVTFSSEEDVEAAI 235

Query: 238 SSFNNALLEGQPIRVNKA 252
            + NN+LLEGQ IRVNKA
Sbjct: 236 VALNNSLLEGQKIRVNKA 253

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BLAST of CsGy7G017850 vs. ExPASy Swiss-Prot
Match: Q39061 (RNA-binding protein CP33, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=CP33 PE=2 SV=1)

HSP 1 Score: 138.3 bits (347), Expect = 1.2e-31
Identity = 70/185 (37.84%), Postives = 117/185 (63.24%), Query Frame = 0


Query: 69  SSVAERKLYIGNIPRNVNNEELTRIVQEHGAVEKAEVMYDKYSGRSRRFAFVTMKTVEDA 128
           +S  E +LY+GN+P  + + EL++I  E G V   +++YDK + RSR F FVTM ++E+A
Sbjct: 111 ASGEEGRLYVGNLPYTITSSELSQIFGEAGTVVDVQIVYDKVTDRSRGFGFVTMGSIEEA 170

Query: 129 NAAIEKLNETEVGGRKIKVNITEKP--VVNTVDMSFLQAEESQFIDSPYKVYVGNISSTV 188
             A++  N +++GGR +KVN  E P    N V  + ++     ++DSP+KVY GN+   +
Sbjct: 171 KEAMQMFNSSQIGGRTVKVNFPEVPRGGENEVMRTKIRDNNRSYVDSPHKVYAGNLGWNL 230

Query: 189 STETLKNFFSEKGKVLSAKVSRVPGTSKSSGYGFVTFSSEEEVDAAISSFNNALLEGQPI 248
           +++ LK+ F ++  VL AKV     T +S G+GF++F S E V +A+++ N   +EG+ +
Sbjct: 231 TSQGLKDAFGDQPGVLGAKVIYERNTGRSRGFGFISFESAENVQSALATMNGVEVEGRAL 290

Query: 249 RVNKA 252
           R+N A
Sbjct: 291 RLNLA 295

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BLAST of CsGy7G017850 vs. ExPASy Swiss-Prot
Match: P19684 (33 kDa ribonucleoprotein, chloroplastic OS=Nicotiana sylvestris OX=4096 PE=1 SV=1)

HSP 1 Score: 136.7 bits (343), Expect = 3.6e-31
Identity = 72/186 (38.71%), Postives = 121/186 (65.05%), Query Frame = 0


Query: 68  ASSVAERKLYIGNIPRNVNNEELTRIVQEHGAVEKAEVMYDKYSGRSRRFAFVTMKTVED 127
           + SV   +LY+GN+P ++ + +L+ I  E G V   E++YD+ + RSR FAFVTM +VE+
Sbjct: 108 SESVEGGRLYVGNLPFSMTSSQLSEIFAEAGTVANVEIVYDRVTDRSRGFAFVTMGSVEE 167

Query: 128 ANAAIEKLNETEVGGRKIKVNITEKP--VVNTVDMSFLQAEESQFIDSPYKVYVGNISST 187
           A  AI   + ++VGGR +KVN  E P      V  + +++    F+DSP+K+YV N+S  
Sbjct: 168 AKEAIRLFDGSQVGGRTVKVNFPEVPRGGEREVMSAKIRSTYQGFVDSPHKLYVANLSWA 227

Query: 188 VSTETLKNFFSEKGKVLSAKVSRVPGTSKSSGYGFVTFSSEEEVDAAISSFNNALLEGQP 247
           ++++ L++ F+++   +SAKV     + +S G+GF+TFSS E +++A+ + N   LEG+P
Sbjct: 228 LTSQGLRDAFADQPGFMSAKVIYDRSSGRSRGFGFITFSSAEAMNSALDTMNEVELEGRP 287

Query: 248 IRVNKA 252
           +R+N A
Sbjct: 288 LRLNVA 293

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BLAST of CsGy7G017850 vs. ExPASy Swiss-Prot
Match: Q08937 (29 kDa ribonucleoprotein B, chloroplastic OS=Nicotiana sylvestris OX=4096 PE=2 SV=1)

HSP 1 Score: 127.5 bits (319), Expect = 2.2e-28
Identity = 83/209 (39.71%), Postives = 115/209 (55.02%), Query Frame = 0


Query: 62  EVATQGASSVAERKLYIGNIPRNVNNEELTRIVQEHGAVEKAEVMYDKYSGRSRRFAFVT 121
           EVA Q   S  + KL++GN+P +V++  L  + +  G VE  EV+YDK +GRSR F FVT
Sbjct: 76  EVAEQPRFS-EDLKLFVGNLPFSVDSAALAGLFERAGNVEMVEVIYDKLTGRSRGFGFVT 135

Query: 122 MKTVEDANAAIEKLNETEVGGRKIKVNITEKPVV-------------------NTVDMSF 181
           M T E+  AA ++ N  E+ GR I+VN    P                        + SF
Sbjct: 136 MSTKEEVEAAEQQFNGYEIDGRAIRVNAGPAPAKRENSSFGGGRGGNSSYGGGRDGNSSF 195

Query: 182 LQAEESQFIDSPYKVYVGNISSTVSTETLKNFFSEKGKVLSAKVSRVPGTSKSSGYGFVT 241
             A   + +DS  +VYVGN+S  V    LK  FSE+G V+ AKV     + +S G+GFVT
Sbjct: 196 GGARGGRSVDSSNRVYVGNLSWGVDDLALKELFSEQGNVVDAKVVYDRDSGRSRGFGFVT 255

Query: 242 FSSEEEVDAAISSFNNALLEGQPIRVNKA 252
           +SS +EV+ AI S N   L+G+ IRV+ A
Sbjct: 256 YSSSKEVNDAIDSLNGVDLDGRSIRVSAA 283

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BLAST of CsGy7G017850 vs. NCBI nr
Match: XP_004135910.1 (30S ribosomal protein 2, chloroplastic [Cucumis sativus] >KAE8646408.1 hypothetical protein Csa_016819 [Cucumis sativus])

HSP 1 Score: 476 bits (1225), Expect = 6.23e-169
Identity = 251/251 (100.00%), Postives = 251/251 (100.00%), Query Frame = 0


Query: 1   MASISSILTPTNLIHSSKKPTDIPQTLSSQFLRPISFHPPHILLRISPVAAKPPTRLFAV 60
           MASISSILTPTNLIHSSKKPTDIPQTLSSQFLRPISFHPPHILLRISPVAAKPPTRLFAV
Sbjct: 1   MASISSILTPTNLIHSSKKPTDIPQTLSSQFLRPISFHPPHILLRISPVAAKPPTRLFAV 60

Query: 61  AEVATQGASSVAERKLYIGNIPRNVNNEELTRIVQEHGAVEKAEVMYDKYSGRSRRFAFV 120
           AEVATQGASSVAERKLYIGNIPRNVNNEELTRIVQEHGAVEKAEVMYDKYSGRSRRFAFV
Sbjct: 61  AEVATQGASSVAERKLYIGNIPRNVNNEELTRIVQEHGAVEKAEVMYDKYSGRSRRFAFV 120

Query: 121 TMKTVEDANAAIEKLNETEVGGRKIKVNITEKPVVNTVDMSFLQAEESQFIDSPYKVYVG 180
           TMKTVEDANAAIEKLNETEVGGRKIKVNITEKPVVNTVDMSFLQAEESQFIDSPYKVYVG
Sbjct: 121 TMKTVEDANAAIEKLNETEVGGRKIKVNITEKPVVNTVDMSFLQAEESQFIDSPYKVYVG 180

Query: 181 NISSTVSTETLKNFFSEKGKVLSAKVSRVPGTSKSSGYGFVTFSSEEEVDAAISSFNNAL 240
           NISSTVSTETLKNFFSEKGKVLSAKVSRVPGTSKSSGYGFVTFSSEEEVDAAISSFNNAL
Sbjct: 181 NISSTVSTETLKNFFSEKGKVLSAKVSRVPGTSKSSGYGFVTFSSEEEVDAAISSFNNAL 240

Query: 241 LEGQPIRVNKA 251
           LEGQPIRVNKA
Sbjct: 241 LEGQPIRVNKA 251

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BLAST of CsGy7G017850 vs. NCBI nr
Match: XP_008461258.1 (PREDICTED: 30S ribosomal protein 2, chloroplastic [Cucumis melo] >KAA0058655.1 30S ribosomal protein 2 [Cucumis melo var. makuwa] >TYK10462.1 30S ribosomal protein 2 [Cucumis melo var. makuwa])

HSP 1 Score: 461 bits (1185), Expect = 7.79e-163
Identity = 242/251 (96.41%), Postives = 247/251 (98.41%), Query Frame = 0


Query: 1   MASISSILTPTNLIHSSKKPTDIPQTLSSQFLRPISFHPPHILLRISPVAAKPPTRLFAV 60
           MASISSILTPTNLIH+SKKPT+I Q LSSQFLRPISFHPPHILLRISPVAA+PPTRLFAV
Sbjct: 1   MASISSILTPTNLIHTSKKPTEISQALSSQFLRPISFHPPHILLRISPVAARPPTRLFAV 60

Query: 61  AEVATQGASSVAERKLYIGNIPRNVNNEELTRIVQEHGAVEKAEVMYDKYSGRSRRFAFV 120
           AE ATQGASSVAERKLYIGNIPRNVNNEELTRIVQEHGAVEKAEVMYDKYSGRSRRFAFV
Sbjct: 61  AEAATQGASSVAERKLYIGNIPRNVNNEELTRIVQEHGAVEKAEVMYDKYSGRSRRFAFV 120

Query: 121 TMKTVEDANAAIEKLNETEVGGRKIKVNITEKPVVNTVDMSFLQAEESQFIDSPYKVYVG 180
           TMKTVEDANAAIEKLNETEVGGRKIKVNITEKPVVNTVD+S LQAEESQFIDSPYKVYVG
Sbjct: 121 TMKTVEDANAAIEKLNETEVGGRKIKVNITEKPVVNTVDLSILQAEESQFIDSPYKVYVG 180

Query: 181 NISSTVSTETLKNFFSEKGKVLSAKVSRVPGTSKSSGYGFVTFSSEEEVDAAISSFNNAL 240
           NISSTVSTETLKNFFSEKGKVLSAKVSRVPGTSKSSGYGFVTFSSEEEV+AAISSFNNAL
Sbjct: 181 NISSTVSTETLKNFFSEKGKVLSAKVSRVPGTSKSSGYGFVTFSSEEEVEAAISSFNNAL 240

Query: 241 LEGQPIRVNKA 251
           LEGQPIRVNKA
Sbjct: 241 LEGQPIRVNKA 251

[Close]

BLAST of CsGy7G017850 vs. NCBI nr
Match: XP_038896967.1 (30S ribosomal protein 2, chloroplastic [Benincasa hispida])

HSP 1 Score: 426 bits (1096), Expect = 2.38e-149
Identity = 228/251 (90.84%), Postives = 237/251 (94.42%), Query Frame = 0


Query: 1   MASISSILTPTNLIHSSKKPTDIPQTLSSQFLRPISFHPPHILLRISPVAAKPPTRLFAV 60
           MAS SSIL+PTNLIHSS KPT+IPQ  S+QFLRPISFHPPHILL     AAK PTRLFAV
Sbjct: 1   MASFSSILSPTNLIHSSTKPTEIPQNFSTQFLRPISFHPPHILL----AAAKRPTRLFAV 60

Query: 61  AEVATQGASSVAERKLYIGNIPRNVNNEELTRIVQEHGAVEKAEVMYDKYSGRSRRFAFV 120
           AE A QGASSVAERKLYIGNIPRNV+NEELTRIVQEHGAVEKAEVMYDKYSGRSRRFAFV
Sbjct: 61  AEAA-QGASSVAERKLYIGNIPRNVDNEELTRIVQEHGAVEKAEVMYDKYSGRSRRFAFV 120

Query: 121 TMKTVEDANAAIEKLNETEVGGRKIKVNITEKPVVNTVDMSFLQAEESQFIDSPYKVYVG 180
           TMKTV+DANAAIEKLNETEVGGR IKVNITEKP+VNT+DMS LQAE+SQFIDSPYKVYVG
Sbjct: 121 TMKTVDDANAAIEKLNETEVGGRTIKVNITEKPLVNTIDMSLLQAEDSQFIDSPYKVYVG 180

Query: 181 NISSTVSTETLKNFFSEKGKVLSAKVSRVPGTSKSSGYGFVTFSSEEEVDAAISSFNNAL 240
           NISSTVSTETLKNFFSEKGKVLSAKVSRVPGTSKSSGYGFVTFSSEEEV+AAISSFNNAL
Sbjct: 181 NISSTVSTETLKNFFSEKGKVLSAKVSRVPGTSKSSGYGFVTFSSEEEVEAAISSFNNAL 240

Query: 241 LEGQPIRVNKA 251
           LEGQPIRVNKA
Sbjct: 241 LEGQPIRVNKA 246

[Close]

BLAST of CsGy7G017850 vs. NCBI nr
Match: XP_022954329.1 (30S ribosomal protein 2, chloroplastic-like isoform X2 [Cucurbita moschata])

HSP 1 Score: 413 bits (1061), Expect = 7.58e-144
Identity = 224/257 (87.16%), Postives = 235/257 (91.44%), Query Frame = 0


Query: 1   MASISSILTPTNLIHSSKKPTDIPQTLSSQFLRPISFHPPHILLRISP----VAAKPPTR 60
           MASISSILTP NLIHSS KPT+IPQTLS+QFLRPISFHP + LLR+SP     A K  TR
Sbjct: 1   MASISSILTPANLIHSSIKPTEIPQTLSTQFLRPISFHPRYTLLRVSPGLQTSAGKRRTR 60

Query: 61  LFAVAE--VATQGASSVAERKLYIGNIPRNVNNEELTRIVQEHGAVEKAEVMYDKYSGRS 120
           LFAVAE  V+ Q  SSVA RKLYIGNIPRNV NEELTRIV+EHGAVEKAEVMYDKYSGRS
Sbjct: 61  LFAVAEAAVSVQDPSSVAARKLYIGNIPRNVGNEELTRIVEEHGAVEKAEVMYDKYSGRS 120

Query: 121 RRFAFVTMKTVEDANAAIEKLNETEVGGRKIKVNITEKPVVNTVDMSFLQAEESQFIDSP 180
           RRFAFVTMKTV+DANA IEKLN+TEVGGR IKVNITEKP+VNTVDMS LQA+ESQFIDSP
Sbjct: 121 RRFAFVTMKTVDDANAVIEKLNDTEVGGRTIKVNITEKPLVNTVDMSLLQADESQFIDSP 180

Query: 181 YKVYVGNISSTVSTETLKNFFSEKGKVLSAKVSRVPGTSKSSGYGFVTFSSEEEVDAAIS 240
           YKVYVGNISSTVSTETLKNFFSEKGKVLSAKVSRVPGTSKSSGYGFVTFSSEEEV+AAIS
Sbjct: 181 YKVYVGNISSTVSTETLKNFFSEKGKVLSAKVSRVPGTSKSSGYGFVTFSSEEEVEAAIS 240

Query: 241 SFNNALLEGQPIRVNKA 251
           SFNNALLEGQPIRVNKA
Sbjct: 241 SFNNALLEGQPIRVNKA 257

[Close]

BLAST of CsGy7G017850 vs. NCBI nr
Match: KAG6575671.1 (30S ribosomal protein 2, chloroplastic, partial [Cucurbita argyrosperma subsp. sororia] >KAG7014222.1 30S ribosomal protein 2, chloroplastic [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 412 bits (1059), Expect = 1.53e-143
Identity = 224/257 (87.16%), Postives = 234/257 (91.05%), Query Frame = 0


Query: 1   MASISSILTPTNLIHSSKKPTDIPQTLSSQFLRPISFHPPHILLRISP----VAAKPPTR 60
           MASISSILTP NLIHSS KPT+IPQ LS+QFLRPISFHP + LLR+SP     A K  TR
Sbjct: 1   MASISSILTPANLIHSSIKPTEIPQNLSTQFLRPISFHPRYTLLRVSPGLQTSAGKRRTR 60

Query: 61  LFAVAEVAT--QGASSVAERKLYIGNIPRNVNNEELTRIVQEHGAVEKAEVMYDKYSGRS 120
           LFAVAEVA   Q  SSVA RKLYIGNIPRNV NEELTRIV+EHGAVEKAEVMYDKYSGRS
Sbjct: 61  LFAVAEVAVSVQDPSSVAARKLYIGNIPRNVGNEELTRIVEEHGAVEKAEVMYDKYSGRS 120

Query: 121 RRFAFVTMKTVEDANAAIEKLNETEVGGRKIKVNITEKPVVNTVDMSFLQAEESQFIDSP 180
           RRFAFVTMKTV+DANA IEKLN+TEVGGR IKVNITEKP+VNTVDMS LQA+ESQFIDSP
Sbjct: 121 RRFAFVTMKTVDDANAVIEKLNDTEVGGRTIKVNITEKPLVNTVDMSLLQADESQFIDSP 180

Query: 181 YKVYVGNISSTVSTETLKNFFSEKGKVLSAKVSRVPGTSKSSGYGFVTFSSEEEVDAAIS 240
           YKVYVGNISSTVSTETLKNFFSEKGKVLSAKVSRVPGTSKSSGYGFVTFSSEEEV+AAIS
Sbjct: 181 YKVYVGNISSTVSTETLKNFFSEKGKVLSAKVSRVPGTSKSSGYGFVTFSSEEEVEAAIS 240

Query: 241 SFNNALLEGQPIRVNKA 251
           SFNNALLEGQPIRVNKA
Sbjct: 241 SFNNALLEGQPIRVNKA 257

[Close]

BLAST of CsGy7G017850 vs. ExPASy TrEMBL
Match: A0A5A7UYL6 (30S ribosomal protein 2 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold459G001110 PE=4 SV=1)

HSP 1 Score: 461 bits (1185), Expect = 3.77e-163
Identity = 242/251 (96.41%), Postives = 247/251 (98.41%), Query Frame = 0


Query: 1   MASISSILTPTNLIHSSKKPTDIPQTLSSQFLRPISFHPPHILLRISPVAAKPPTRLFAV 60
           MASISSILTPTNLIH+SKKPT+I Q LSSQFLRPISFHPPHILLRISPVAA+PPTRLFAV
Sbjct: 1   MASISSILTPTNLIHTSKKPTEISQALSSQFLRPISFHPPHILLRISPVAARPPTRLFAV 60

Query: 61  AEVATQGASSVAERKLYIGNIPRNVNNEELTRIVQEHGAVEKAEVMYDKYSGRSRRFAFV 120
           AE ATQGASSVAERKLYIGNIPRNVNNEELTRIVQEHGAVEKAEVMYDKYSGRSRRFAFV
Sbjct: 61  AEAATQGASSVAERKLYIGNIPRNVNNEELTRIVQEHGAVEKAEVMYDKYSGRSRRFAFV 120

Query: 121 TMKTVEDANAAIEKLNETEVGGRKIKVNITEKPVVNTVDMSFLQAEESQFIDSPYKVYVG 180
           TMKTVEDANAAIEKLNETEVGGRKIKVNITEKPVVNTVD+S LQAEESQFIDSPYKVYVG
Sbjct: 121 TMKTVEDANAAIEKLNETEVGGRKIKVNITEKPVVNTVDLSILQAEESQFIDSPYKVYVG 180

Query: 181 NISSTVSTETLKNFFSEKGKVLSAKVSRVPGTSKSSGYGFVTFSSEEEVDAAISSFNNAL 240
           NISSTVSTETLKNFFSEKGKVLSAKVSRVPGTSKSSGYGFVTFSSEEEV+AAISSFNNAL
Sbjct: 181 NISSTVSTETLKNFFSEKGKVLSAKVSRVPGTSKSSGYGFVTFSSEEEVEAAISSFNNAL 240

Query: 241 LEGQPIRVNKA 251
           LEGQPIRVNKA
Sbjct: 241 LEGQPIRVNKA 251

[Close]

BLAST of CsGy7G017850 vs. ExPASy TrEMBL
Match: A0A1S3CEQ4 (30S ribosomal protein 2, chloroplastic OS=Cucumis melo OX=3656 GN=LOC103499898 PE=4 SV=1)

HSP 1 Score: 461 bits (1185), Expect = 3.77e-163
Identity = 242/251 (96.41%), Postives = 247/251 (98.41%), Query Frame = 0


Query: 1   MASISSILTPTNLIHSSKKPTDIPQTLSSQFLRPISFHPPHILLRISPVAAKPPTRLFAV 60
           MASISSILTPTNLIH+SKKPT+I Q LSSQFLRPISFHPPHILLRISPVAA+PPTRLFAV
Sbjct: 1   MASISSILTPTNLIHTSKKPTEISQALSSQFLRPISFHPPHILLRISPVAARPPTRLFAV 60

Query: 61  AEVATQGASSVAERKLYIGNIPRNVNNEELTRIVQEHGAVEKAEVMYDKYSGRSRRFAFV 120
           AE ATQGASSVAERKLYIGNIPRNVNNEELTRIVQEHGAVEKAEVMYDKYSGRSRRFAFV
Sbjct: 61  AEAATQGASSVAERKLYIGNIPRNVNNEELTRIVQEHGAVEKAEVMYDKYSGRSRRFAFV 120

Query: 121 TMKTVEDANAAIEKLNETEVGGRKIKVNITEKPVVNTVDMSFLQAEESQFIDSPYKVYVG 180
           TMKTVEDANAAIEKLNETEVGGRKIKVNITEKPVVNTVD+S LQAEESQFIDSPYKVYVG
Sbjct: 121 TMKTVEDANAAIEKLNETEVGGRKIKVNITEKPVVNTVDLSILQAEESQFIDSPYKVYVG 180

Query: 181 NISSTVSTETLKNFFSEKGKVLSAKVSRVPGTSKSSGYGFVTFSSEEEVDAAISSFNNAL 240
           NISSTVSTETLKNFFSEKGKVLSAKVSRVPGTSKSSGYGFVTFSSEEEV+AAISSFNNAL
Sbjct: 181 NISSTVSTETLKNFFSEKGKVLSAKVSRVPGTSKSSGYGFVTFSSEEEVEAAISSFNNAL 240

Query: 241 LEGQPIRVNKA 251
           LEGQPIRVNKA
Sbjct: 241 LEGQPIRVNKA 251

[Close]

BLAST of CsGy7G017850 vs. ExPASy TrEMBL
Match: A0A0A0K8E7 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G428960 PE=4 SV=1)

HSP 1 Score: 448 bits (1152), Expect = 6.70e-158
Identity = 235/235 (100.00%), Postives = 235/235 (100.00%), Query Frame = 0


Query: 17  SKKPTDIPQTLSSQFLRPISFHPPHILLRISPVAAKPPTRLFAVAEVATQGASSVAERKL 76
           SKKPTDIPQTLSSQFLRPISFHPPHILLRISPVAAKPPTRLFAVAEVATQGASSVAERKL
Sbjct: 31  SKKPTDIPQTLSSQFLRPISFHPPHILLRISPVAAKPPTRLFAVAEVATQGASSVAERKL 90

Query: 77  YIGNIPRNVNNEELTRIVQEHGAVEKAEVMYDKYSGRSRRFAFVTMKTVEDANAAIEKLN 136
           YIGNIPRNVNNEELTRIVQEHGAVEKAEVMYDKYSGRSRRFAFVTMKTVEDANAAIEKLN
Sbjct: 91  YIGNIPRNVNNEELTRIVQEHGAVEKAEVMYDKYSGRSRRFAFVTMKTVEDANAAIEKLN 150

Query: 137 ETEVGGRKIKVNITEKPVVNTVDMSFLQAEESQFIDSPYKVYVGNISSTVSTETLKNFFS 196
           ETEVGGRKIKVNITEKPVVNTVDMSFLQAEESQFIDSPYKVYVGNISSTVSTETLKNFFS
Sbjct: 151 ETEVGGRKIKVNITEKPVVNTVDMSFLQAEESQFIDSPYKVYVGNISSTVSTETLKNFFS 210

Query: 197 EKGKVLSAKVSRVPGTSKSSGYGFVTFSSEEEVDAAISSFNNALLEGQPIRVNKA 251
           EKGKVLSAKVSRVPGTSKSSGYGFVTFSSEEEVDAAISSFNNALLEGQPIRVNKA
Sbjct: 211 EKGKVLSAKVSRVPGTSKSSGYGFVTFSSEEEVDAAISSFNNALLEGQPIRVNKA 265

[Close]

BLAST of CsGy7G017850 vs. ExPASy TrEMBL
Match: A0A6J1GSN8 (30S ribosomal protein 2, chloroplastic-like isoform X2 OS=Cucurbita moschata OX=3662 GN=LOC111456607 PE=4 SV=1)

HSP 1 Score: 413 bits (1061), Expect = 3.67e-144
Identity = 224/257 (87.16%), Postives = 235/257 (91.44%), Query Frame = 0


Query: 1   MASISSILTPTNLIHSSKKPTDIPQTLSSQFLRPISFHPPHILLRISP----VAAKPPTR 60
           MASISSILTP NLIHSS KPT+IPQTLS+QFLRPISFHP + LLR+SP     A K  TR
Sbjct: 1   MASISSILTPANLIHSSIKPTEIPQTLSTQFLRPISFHPRYTLLRVSPGLQTSAGKRRTR 60

Query: 61  LFAVAE--VATQGASSVAERKLYIGNIPRNVNNEELTRIVQEHGAVEKAEVMYDKYSGRS 120
           LFAVAE  V+ Q  SSVA RKLYIGNIPRNV NEELTRIV+EHGAVEKAEVMYDKYSGRS
Sbjct: 61  LFAVAEAAVSVQDPSSVAARKLYIGNIPRNVGNEELTRIVEEHGAVEKAEVMYDKYSGRS 120

Query: 121 RRFAFVTMKTVEDANAAIEKLNETEVGGRKIKVNITEKPVVNTVDMSFLQAEESQFIDSP 180
           RRFAFVTMKTV+DANA IEKLN+TEVGGR IKVNITEKP+VNTVDMS LQA+ESQFIDSP
Sbjct: 121 RRFAFVTMKTVDDANAVIEKLNDTEVGGRTIKVNITEKPLVNTVDMSLLQADESQFIDSP 180

Query: 181 YKVYVGNISSTVSTETLKNFFSEKGKVLSAKVSRVPGTSKSSGYGFVTFSSEEEVDAAIS 240
           YKVYVGNISSTVSTETLKNFFSEKGKVLSAKVSRVPGTSKSSGYGFVTFSSEEEV+AAIS
Sbjct: 181 YKVYVGNISSTVSTETLKNFFSEKGKVLSAKVSRVPGTSKSSGYGFVTFSSEEEVEAAIS 240

Query: 241 SFNNALLEGQPIRVNKA 251
           SFNNALLEGQPIRVNKA
Sbjct: 241 SFNNALLEGQPIRVNKA 257

[Close]

BLAST of CsGy7G017850 vs. ExPASy TrEMBL
Match: A0A6J1GQT6 (30S ribosomal protein 2, chloroplastic-like isoform X1 OS=Cucurbita moschata OX=3662 GN=LOC111456607 PE=4 SV=1)

HSP 1 Score: 413 bits (1061), Expect = 8.04e-144
Identity = 224/257 (87.16%), Postives = 235/257 (91.44%), Query Frame = 0


Query: 1   MASISSILTPTNLIHSSKKPTDIPQTLSSQFLRPISFHPPHILLRISP----VAAKPPTR 60
           MASISSILTP NLIHSS KPT+IPQTLS+QFLRPISFHP + LLR+SP     A K  TR
Sbjct: 23  MASISSILTPANLIHSSIKPTEIPQTLSTQFLRPISFHPRYTLLRVSPGLQTSAGKRRTR 82

Query: 61  LFAVAE--VATQGASSVAERKLYIGNIPRNVNNEELTRIVQEHGAVEKAEVMYDKYSGRS 120
           LFAVAE  V+ Q  SSVA RKLYIGNIPRNV NEELTRIV+EHGAVEKAEVMYDKYSGRS
Sbjct: 83  LFAVAEAAVSVQDPSSVAARKLYIGNIPRNVGNEELTRIVEEHGAVEKAEVMYDKYSGRS 142

Query: 121 RRFAFVTMKTVEDANAAIEKLNETEVGGRKIKVNITEKPVVNTVDMSFLQAEESQFIDSP 180
           RRFAFVTMKTV+DANA IEKLN+TEVGGR IKVNITEKP+VNTVDMS LQA+ESQFIDSP
Sbjct: 143 RRFAFVTMKTVDDANAVIEKLNDTEVGGRTIKVNITEKPLVNTVDMSLLQADESQFIDSP 202

Query: 181 YKVYVGNISSTVSTETLKNFFSEKGKVLSAKVSRVPGTSKSSGYGFVTFSSEEEVDAAIS 240
           YKVYVGNISSTVSTETLKNFFSEKGKVLSAKVSRVPGTSKSSGYGFVTFSSEEEV+AAIS
Sbjct: 203 YKVYVGNISSTVSTETLKNFFSEKGKVLSAKVSRVPGTSKSSGYGFVTFSSEEEVEAAIS 262

Query: 241 SFNNALLEGQPIRVNKA 251
           SFNNALLEGQPIRVNKA
Sbjct: 263 SFNNALLEGQPIRVNKA 279

[Close]

BLAST of CsGy7G017850 vs. TAIR 10
Match: AT3G52150.1 (RNA-binding (RRM/RBD/RNP motifs) family protein )

HSP 1 Score: 266.9 bits (681), Expect = 1.6e-71
Identity = 136/198 (68.69%), Postives = 166/198 (83.84%), Query Frame = 0


Query: 58  FAVAEVATQGA----SSVAERKLYIGNIPRNVNNEELTRIVQEHGAVEKAEVMYDKYSGR 117
           +AV E   + A    SS A R++YIGNIPR V NE+LT++V+EHGAVEK +VMYDKYSGR
Sbjct: 56  YAVTETEEKPAALDPSSEAARRVYIGNIPRTVTNEQLTKLVEEHGAVEKVQVMYDKYSGR 115

Query: 118 SRRFAFVTMKTVEDANAAIEKLNETEVGGRKIKVNITEKPVVNTVDMSFLQAEESQFIDS 177
           SRRF F TMK+VEDANA +EKLN   V GR+IKVNITEKP+ ++ D+S LQ+E+S F+DS
Sbjct: 116 SRRFGFATMKSVEDANAVVEKLNGNTVEGREIKVNITEKPIASSPDLSVLQSEDSAFVDS 175

Query: 178 PYKVYVGNISSTVSTETLKNFFSEKGKVLSAKVSRVPGTSKSSGYGFVTFSSEEEVDAAI 237
           PYKVYVGN++ TV+ E L+N FSEKGKV+SAKVSRVPGTSKS+G+GFVTFSSEE+V+AAI
Sbjct: 176 PYKVYVGNLAKTVTKEMLENLFSEKGKVVSAKVSRVPGTSKSTGFGFVTFSSEEDVEAAI 235

Query: 238 SSFNNALLEGQPIRVNKA 252
            + NN+LLEGQ IRVNKA
Sbjct: 236 VALNNSLLEGQKIRVNKA 253

[Close]

BLAST of CsGy7G017850 vs. TAIR 10
Match: AT3G52150.2 (RNA-binding (RRM/RBD/RNP motifs) family protein )

HSP 1 Score: 266.9 bits (681), Expect = 1.6e-71
Identity = 136/198 (68.69%), Postives = 166/198 (83.84%), Query Frame = 0


Query: 58  FAVAEVATQGA----SSVAERKLYIGNIPRNVNNEELTRIVQEHGAVEKAEVMYDKYSGR 117
           +AV E   + A    SS A R++YIGNIPR V NE+LT++V+EHGAVEK +VMYDKYSGR
Sbjct: 56  YAVTETEEKPAALDPSSEAARRVYIGNIPRTVTNEQLTKLVEEHGAVEKVQVMYDKYSGR 115

Query: 118 SRRFAFVTMKTVEDANAAIEKLNETEVGGRKIKVNITEKPVVNTVDMSFLQAEESQFIDS 177
           SRRF F TMK+VEDANA +EKLN   V GR+IKVNITEKP+ ++ D+S LQ+E+S F+DS
Sbjct: 116 SRRFGFATMKSVEDANAVVEKLNGNTVEGREIKVNITEKPIASSPDLSVLQSEDSAFVDS 175

Query: 178 PYKVYVGNISSTVSTETLKNFFSEKGKVLSAKVSRVPGTSKSSGYGFVTFSSEEEVDAAI 237
           PYKVYVGN++ TV+ E L+N FSEKGKV+SAKVSRVPGTSKS+G+GFVTFSSEE+V+AAI
Sbjct: 176 PYKVYVGNLAKTVTKEMLENLFSEKGKVVSAKVSRVPGTSKSTGFGFVTFSSEEDVEAAI 235

Query: 238 SSFNNALLEGQPIRVNKA 252
            + NN+LLEGQ IRVNKA
Sbjct: 236 VALNNSLLEGQKIRVNKA 253

[Close]

BLAST of CsGy7G017850 vs. TAIR 10
Match: AT3G52380.1 (chloroplast RNA-binding protein 33 )

HSP 1 Score: 138.3 bits (347), Expect = 8.7e-33
Identity = 70/185 (37.84%), Postives = 117/185 (63.24%), Query Frame = 0


Query: 69  SSVAERKLYIGNIPRNVNNEELTRIVQEHGAVEKAEVMYDKYSGRSRRFAFVTMKTVEDA 128
           +S  E +LY+GN+P  + + EL++I  E G V   +++YDK + RSR F FVTM ++E+A
Sbjct: 111 ASGEEGRLYVGNLPYTITSSELSQIFGEAGTVVDVQIVYDKVTDRSRGFGFVTMGSIEEA 170

Query: 129 NAAIEKLNETEVGGRKIKVNITEKP--VVNTVDMSFLQAEESQFIDSPYKVYVGNISSTV 188
             A++  N +++GGR +KVN  E P    N V  + ++     ++DSP+KVY GN+   +
Sbjct: 171 KEAMQMFNSSQIGGRTVKVNFPEVPRGGENEVMRTKIRDNNRSYVDSPHKVYAGNLGWNL 230

Query: 189 STETLKNFFSEKGKVLSAKVSRVPGTSKSSGYGFVTFSSEEEVDAAISSFNNALLEGQPI 248
           +++ LK+ F ++  VL AKV     T +S G+GF++F S E V +A+++ N   +EG+ +
Sbjct: 231 TSQGLKDAFGDQPGVLGAKVIYERNTGRSRGFGFISFESAENVQSALATMNGVEVEGRAL 290

Query: 249 RVNKA 252
           R+N A
Sbjct: 291 RLNLA 295

[Close]

BLAST of CsGy7G017850 vs. TAIR 10
Match: AT1G60000.1 (RNA-binding (RRM/RBD/RNP motifs) family protein )

HSP 1 Score: 134.8 bits (338), Expect = 9.6e-32
Identity = 91/240 (37.92%), Postives = 136/240 (56.67%), Query Frame = 0


Query: 28  SSQFLRPISFHPPHILLRISPVAAKPPTRLFAV----------AEVATQGASSVAE---- 87
           S+Q L   +F  P  LL    ++++  +R F V           E    GAS+V +    
Sbjct: 27  SNQTLLRFNFSTPKPLL----ISSRSCSRRFRVLSETITVKLEEEEKDDGASAVLDPPAA 86

Query: 88  --RKLYIGNIPRNVNNEELTRIVQEHGAVEKAEVMYDKYSGRSRRFAFVTMKTVEDANAA 147
              KLY GN+P NV++  L +I+Q+    E  EV+Y++ +G+SR FAFVTM  VED N  
Sbjct: 87  VNTKLYFGNLPYNVDSATLAQIIQDFANPELVEVLYNRDTGQSRGFAFVTMSNVEDCNII 146

Query: 148 IEKLNETEVGGRKIKVNITEKPVVNTVDMSFLQAEESQFIDSPYKVYVGNISSTVSTETL 207
           I+ L+ TE  GR +KVN  +KP  N         +E  + ++ +K++VGN+S TV++E+L
Sbjct: 147 IDNLDGTEYLGRALKVNFADKPKPN---------KEPLYPETEHKLFVGNLSWTVTSESL 206

Query: 208 KNFFSEKGKVLSAKVSRVPGTSKSSGYGFVTFSSEEEVDAAISSFNNALLEGQPIRVNKA 252
              F E G V+ A+V     T +S GYGFV +SS+ E++ A+ S +   LEG+ IRVN A
Sbjct: 207 AGAFRECGDVVGARVVFDGDTGRSRGYGFVCYSSKAEMETALESLDGFELEGRAIRVNLA 253

[Close]

BLAST of CsGy7G017850 vs. TAIR 10
Match: AT5G50250.1 (chloroplast RNA-binding protein 31B )

HSP 1 Score: 127.1 bits (318), Expect = 2.0e-29
Identity = 69/179 (38.55%), Postives = 109/179 (60.89%), Query Frame = 0


Query: 73  ERKLYIGNIPRNVNNEELTRIVQEHGAVEKAEVMYDKYSGRSRRFAFVTMKTVEDANAAI 132
           E KL++GN+P +V+++ L  + ++ G VE +EV+Y++ + +SR F FVTM TVE+A  A+
Sbjct: 112 EAKLFVGNLPYDVDSQALAMLFEQAGTVEISEVIYNRDTDQSRGFGFVTMSTVEEAEKAV 171

Query: 133 EKLNETEVGGRKIKVNITEKPVVNTVDMSFLQAEESQFIDSPYKVYVGNISSTVSTETLK 192
           EK N  EV GR++ VN                  + +  D+ +++YVGN+   V +  L+
Sbjct: 172 EKFNSFEVNGRRLTVN-------RAAPRGSRPERQPRVYDAAFRIYVGNLPWDVDSGRLE 231

Query: 193 NFFSEKGKVLSAKVSRVPGTSKSSGYGFVTFSSEEEVDAAISSFNNALLEGQPIRVNKA 252
             FSE GKV+ A+V     T +S G+GFV  S+E EV+ AI++ +   LEG+ I+VN A
Sbjct: 232 RLFSEHGKVVDARVVSDRETGRSRGFGFVQMSNENEVNVAIAALDGQNLEGRAIKVNVA 283

The following BLAST results are available for this feature:

BLAST of CsGy7G017850 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
P82277	3.2e-72	59.32	30S ribosomal protein 2, chloroplastic OS=Spinacia oleracea OX=3562 GN=PSRP2 PE=...	[more]
Q8VYM4	2.3e-70	68.69	30S ribosomal protein 2, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=PSRP2 ...	[more]
Q39061	1.2e-31	37.84	RNA-binding protein CP33, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=CP33 ...	[more]
P19684	3.6e-31	38.71	33 kDa ribonucleoprotein, chloroplastic OS=Nicotiana sylvestris OX=4096 PE=1 SV=...	[more]
Q08937	2.2e-28	39.71	29 kDa ribonucleoprotein B, chloroplastic OS=Nicotiana sylvestris OX=4096 PE=2 S...	[more]

BLAST of CsGy7G017850 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_004135910.1	6.23e-169	100.00	30S ribosomal protein 2, chloroplastic [Cucumis sativus] >KAE8646408.1 hypotheti...	[more]
XP_008461258.1	7.79e-163	96.41	PREDICTED: 30S ribosomal protein 2, chloroplastic [Cucumis melo] >KAA0058655.1 3...	[more]
XP_038896967.1	2.38e-149	90.84	30S ribosomal protein 2, chloroplastic [Benincasa hispida]	[more]
XP_022954329.1	7.58e-144	87.16	30S ribosomal protein 2, chloroplastic-like isoform X2 [Cucurbita moschata]	[more]
KAG6575671.1	1.53e-143	87.16	30S ribosomal protein 2, chloroplastic, partial [Cucurbita argyrosperma subsp. s...	[more]

BLAST of CsGy7G017850 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5A7UYL6	3.77e-163	96.41	30S ribosomal protein 2 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold...	[more]
A0A1S3CEQ4	3.77e-163	96.41	30S ribosomal protein 2, chloroplastic OS=Cucumis melo OX=3656 GN=LOC103499898 P...	[more]
A0A0A0K8E7	6.70e-158	100.00	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G428960 PE=4 SV=1	[more]
A0A6J1GSN8	3.67e-144	87.16	30S ribosomal protein 2, chloroplastic-like isoform X2 OS=Cucurbita moschata OX=...	[more]
A0A6J1GQT6	8.04e-144	87.16	30S ribosomal protein 2, chloroplastic-like isoform X1 OS=Cucurbita moschata OX=...	[more]

BLAST of CsGy7G017850 vs. TAIR 10


Match Name	E-value	Identity	Description
AT3G52150.1	1.6e-71	68.69	RNA-binding (RRM/RBD/RNP motifs) family protein	[more]
AT3G52150.2	1.6e-71	68.69	RNA-binding (RRM/RBD/RNP motifs) family protein	[more]
AT3G52380.1	8.7e-33	37.84	chloroplast RNA-binding protein 33	[more]
AT1G60000.1	9.6e-32	37.92	RNA-binding (RRM/RBD/RNP motifs) family protein	[more]
AT5G50250.1	2.0e-29	38.55	chloroplast RNA-binding protein 31B	[more]

InterPro

Analysis Name: InterPro Annotations of Cucumber (Gy14) v2.1
Date Performed: 2021-10-25

Position :

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x 1


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR003954	RNA recognition motif domain, eukaryote	SMART	SM00361	rrm2_1	coord: 75..148 e-value: 2.2 score: 10.7 coord: 176..249 e-value: 0.34 score: 18.9
IPR000504	RNA recognition motif domain	SMART	SM00360	rrm1_1	coord: 176..249 e-value: 4.4E-23 score: 92.7 coord: 75..148 e-value: 1.7E-26 score: 104.0
IPR000504	RNA recognition motif domain	PFAM	PF00076	RRM_1	coord: 76..146 e-value: 1.2E-19 score: 69.9 coord: 177..247 e-value: 3.2E-17 score: 62.1
IPR000504	RNA recognition motif domain	PROSITE	PS50102	RRM	coord: 175..251 score: 18.222727
IPR000504	RNA recognition motif domain	PROSITE	PS50102	RRM	coord: 74..152 score: 18.666168
IPR012677	Nucleotide-binding alpha-beta plait domain superfamily	GENE3D	3.30.70.330		coord: 50..156 e-value: 1.1E-26 score: 95.6
IPR012677	Nucleotide-binding alpha-beta plait domain superfamily	GENE3D	3.30.70.330		coord: 161..251 e-value: 4.8E-24 score: 86.7
None	No IPR available	PANTHER	PTHR48025:SF4	30S RIBOSOMAL PROTEIN 2, CHLOROPLASTIC	coord: 1..251
None	No IPR available	PANTHER	PTHR48025	OS02G0815200 PROTEIN	coord: 1..251
None	No IPR available	CDD	cd12399	RRM_HP0827_like	coord: 75..152 e-value: 4.64007E-35 score: 118.485
IPR035979	RNA-binding domain superfamily	SUPERFAMILY	54928	RNA-binding domain, RBD	coord: 62..152
IPR035979	RNA-binding domain superfamily	SUPERFAMILY	54928	RNA-binding domain, RBD	coord: 170..251

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CsGy7G017850.2	CsGy7G017850.2	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
cellular_component	GO:0005840	ribosome
molecular_function	GO:0003723	RNA binding
molecular_function	GO:0003676	nucleic acid binding