CsGy7G016070 (gene) Cucumber (Gy14) v2.1

Overview


Name	CsGy7G016070
Type	gene
Organism	Cucumis sativus L. var. sativus cv. Gy14 (Cucumber (Gy14) v2.1)
Description	protein COFACTOR ASSEMBLY OF COMPLEX C SUBUNIT B CCB3, chloroplastic
Location	Gy14Chr7: 19821180 .. 19823060 (-)
RNA-Seq Expression	CsGy7G016070
Synteny	CsGy7G016070

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

GGCAACCGATAATGGAATCAATGAATCCTCCATTTTAATGGCCCAAACCCAATTGCTCCTATTGATGATAAAGGGATAGCCTTCTCATTCTTTCTCCACCGGAGCTCCTCTGTGAAACCCATGGCTGCCACCGCCTGCTCCTCTCTCAGCTCCATTCGAGTAATAGGTTTTTTTCTTTCTCCTTGTTGATTCCAGTGCATTGAAATTGGATTTTCTCTTAGTTTTTTTTGCTTTATCCTTATAATTTAGGTATAGGATCATCCCCTTTGACTCCCAACCATGGAAATTCAAATTTCTGTGTATGTATTCACCTTCTATACCTTTCTATTACTTTCCCTGCTCCCGATTATGCTTTTACTCTTCCCTGAATGGAGGGTTCTGACTTGTTCAGTTGGATAAGGAATATTGCAATTAGATATTGAGACTTGAAAGGTTAAGTTGAGGTTAATATTGCAATTTTTGAAAGAATAGAGTAATGTTTGAAACAAAGGGCGAAGGGCGAACTTGAAAGGTTAAGTTGAGGTTAATATTGCAATTTTTGAAAGAATAGAGTAATGTTTGAAACAAAGGGCGAAGGGCGAACTTAAAGAGTATTTTTGATAATTTAACTGTTTAAATTTTGTTTTGAGTTTTTGGCATTAGGACCATGGTTATGTATGATTCTAGCCTAATGAGTTAGCTAAATAAGATAAATGATGGAGTGATGAAATAGACTTTTAGATTGACTTTTTTAAGTGCTTAAAAACAATTTTTTAAACATTTTAAGAAGTTAATTCGAACAAGCCTTTAGTTTAAGATGTATTCCATGTCAGTCACTCTGTCAAACATTTTTACATATCACTGTCCTATTCCCCAGTGTCGTGCATTTAACTATTGTTATATCATTGTAAATAGTGAGTAGAATCGCCTATATTTAAAATTACTTTCAAATAGTTAAAGCACCTAAAAAGTCATTCTAGACATGCACTTAGTTTGTGAATTGCATCCATTTGCAAAATGTTTAGATTTATTACCTTGTTTCGACAGAGAGGCTTCAAGTACCATCCTCAAAGAAATCCAAACTGCAAATTCCAAGCAATCAAATGTAGCTCATCTTTGTTGGGTTCTTTTACCTCTTCCAAGAGTCTTCTGTCATTGGCCTATGTCATCCCTCCATTAAAGCCAGCTGCTGCTTACGAAGCTGCAAGGACTATCCCCTTTACCTTGCAAGATGCATCAATGGCTGCCTCTGATTTTGTGAACAGTATGACTTTGGCTGACCTCGACCCAGGAACGGCAAAGCTTGCGATCAGCTTTCTGGGGCCGTCTCTCTCGGTGTTTTCGTTTTTGTTTATTGCTAGAATAGTAATGTCTTGGTATCCCAAGTTGCCTGTGGGGAAGTTTCCATATGTCATAGCTTATGCCCCCACTGAACCACTTCTAGTTGCAACAAGGAAGGTGATCCCTCCTCTCGGCGGAGTTGACGTAACACCAGTTGTCTGGTTCGGATTGATTAGTTTCCTCAATGAGATATTGCTCGGTCCCCAAGGGCTCCTTGTCCTCCTTTCTCAACAAGTCAGCTAAATCTTGATGAGAATGCTCAAGAGAAACATTCTTTTGTTTTTTAGTTCTGTATATGTAACTGTTCTTAGCTGAGCCTCTTTGGTTCCAAAAGACAAAGAATTTGAAAACTTGAAATTCCTAATGAAGAAAATTTTCCTCATCCCAG

mRNA sequence

GGCAACCGATAATGGAATCAATGAATCCTCCATTTTAATGGCCCAAACCCAATTGCTCCTATTGATGATAAAGGGATAGCCTTCTCATTCTTTCTCCACCGGAGCTCCTCTGTGAAACCCATGGCTGCCACCGCCTGCTCCTCTCTCAGCTCCATTCGAGTAATAGGTATAGGATCATCCCCTTTGACTCCCAACCATGGAAATTCAAATTTCTGTAGAGGCTTCAAGTACCATCCTCAAAGAAATCCAAACTGCAAATTCCAAGCAATCAAATGTAGCTCATCTTTGTTGGGTTCTTTTACCTCTTCCAAGAGTCTTCTGTCATTGGCCTATGTCATCCCTCCATTAAAGCCAGCTGCTGCTTACGAAGCTGCAAGGACTATCCCCTTTACCTTGCAAGATGCATCAATGGCTGCCTCTGATTTTGTGAACAGTATGACTTTGGCTGACCTCGACCCAGGAACGGCAAAGCTTGCGATCAGCTTTCTGGGGCCGTCTCTCTCGGTGTTTTCGTTTTTGTTTATTGCTAGAATAGTAATGTCTTGGTATCCCAAGTTGCCTGTGGGGAAGTTTCCATATGTCATAGCTTATGCCCCCACTGAACCACTTCTAGTTGCAACAAGGAAGGTGATCCCTCCTCTCGGCGGAGTTGACGTAACACCAGTTGTCTGGTTCGGATTGATTAGTTTCCTCAATGAGATATTGCTCGGTCCCCAAGGGCTCCTTGTCCTCCTTTCTCAACAAGTCAGCTAAATCTTGATGAGAATGCTCAAGAGAAACATTCTTTTGTTTTTTAGTTCTGTATATGTAACTGTTCTTAGCTGAGCCTCTTTGGTTCCAAAAGACAAAGAATTTGAAAACTTGAAATTCCTAATGAAGAAAATTTTCCTCATCCCAG

Coding sequence (CDS)

ATGGCTGCCACCGCCTGCTCCTCTCTCAGCTCCATTCGAGTAATAGGTATAGGATCATCCCCTTTGACTCCCAACCATGGAAATTCAAATTTCTGTAGAGGCTTCAAGTACCATCCTCAAAGAAATCCAAACTGCAAATTCCAAGCAATCAAATGTAGCTCATCTTTGTTGGGTTCTTTTACCTCTTCCAAGAGTCTTCTGTCATTGGCCTATGTCATCCCTCCATTAAAGCCAGCTGCTGCTTACGAAGCTGCAAGGACTATCCCCTTTACCTTGCAAGATGCATCAATGGCTGCCTCTGATTTTGTGAACAGTATGACTTTGGCTGACCTCGACCCAGGAACGGCAAAGCTTGCGATCAGCTTTCTGGGGCCGTCTCTCTCGGTGTTTTCGTTTTTGTTTATTGCTAGAATAGTAATGTCTTGGTATCCCAAGTTGCCTGTGGGGAAGTTTCCATATGTCATAGCTTATGCCCCCACTGAACCACTTCTAGTTGCAACAAGGAAGGTGATCCCTCCTCTCGGCGGAGTTGACGTAACACCAGTTGTCTGGTTCGGATTGATTAGTTTCCTCAATGAGATATTGCTCGGTCCCCAAGGGCTCCTTGTCCTCCTTTCTCAACAAGTCAGCTAA

Protein sequence

MAATACSSLSSIRVIGIGSSPLTPNHGNSNFCRGFKYHPQRNPNCKFQAIKCSSSLLGSFTSSKSLLSLAYVIPPLKPAAAYEAARTIPFTLQDASMAASDFVNSMTLADLDPGTAKLAISFLGPSLSVFSFLFIARIVMSWYPKLPVGKFPYVIAYAPTEPLLVATRKVIPPLGGVDVTPVVWFGLISFLNEILLGPQGLLVLLSQQVS*

Homology

[Close]

BLAST of CsGy7G016070 vs. ExPASy Swiss-Prot
Match: Q8RWM7 (Protein COFACTOR ASSEMBLY OF COMPLEX C SUBUNIT B CCB3, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=CCB3 PE=1 SV=1)

HSP 1 Score: 179.1 bits (453), Expect = 5.2e-44
Identity = 93/126 (73.81%), Postives = 106/126 (84.13%), Query Frame = 0


Query: 83  EAARTIPFTLQDASMAASDFVNSMTLADLDPGTAKLAISFLGPSLSVFSFLFIARIVMSW 142
           EAA T     Q  S+  S+ + +++LADLDPGTAKLAI  LGP+LS F FLFI RIVMSW
Sbjct: 48  EAATTTNLIRQTNSI--SESLRNISLADLDPGTAKLAIGILGPALSAFGFLFILRIVMSW 107

Query: 143 YPKLPVGKFPYVIAYAPTEPLLVATRKVIPPLGGVDVTPVVWFGLISFLNEILLGPQGLL 202
           YPKLPV KFPYV+AYAPTEP+LV TRKVIPPL GVDVTPVVWFGL+SFL+EIL+GPQGLL
Sbjct: 108 YPKLPVDKFPYVLAYAPTEPILVQTRKVIPPLAGVDVTPVVWFGLVSFLSEILVGPQGLL 167

Query: 203 VLLSQQ 209
           VL+SQQ
Sbjct: 168 VLVSQQ 171

[Close]

BLAST of CsGy7G016070 vs. NCBI nr
Match: XP_004136016.2 (protein COFACTOR ASSEMBLY OF COMPLEX C SUBUNIT B CCB3, chloroplastic isoform X1 [Cucumis sativus] >KGN44957.1 hypothetical protein Csa_015527 [Cucumis sativus])

HSP 1 Score: 404 bits (1038), Expect = 8.65e-142
Identity = 210/210 (100.00%), Postives = 210/210 (100.00%), Query Frame = 0


Query: 1   MAATACSSLSSIRVIGIGSSPLTPNHGNSNFCRGFKYHPQRNPNCKFQAIKCSSSLLGSF 60
           MAATACSSLSSIRVIGIGSSPLTPNHGNSNFCRGFKYHPQRNPNCKFQAIKCSSSLLGSF
Sbjct: 1   MAATACSSLSSIRVIGIGSSPLTPNHGNSNFCRGFKYHPQRNPNCKFQAIKCSSSLLGSF 60

Query: 61  TSSKSLLSLAYVIPPLKPAAAYEAARTIPFTLQDASMAASDFVNSMTLADLDPGTAKLAI 120
           TSSKSLLSLAYVIPPLKPAAAYEAARTIPFTLQDASMAASDFVNSMTLADLDPGTAKLAI
Sbjct: 61  TSSKSLLSLAYVIPPLKPAAAYEAARTIPFTLQDASMAASDFVNSMTLADLDPGTAKLAI 120

Query: 121 SFLGPSLSVFSFLFIARIVMSWYPKLPVGKFPYVIAYAPTEPLLVATRKVIPPLGGVDVT 180
           SFLGPSLSVFSFLFIARIVMSWYPKLPVGKFPYVIAYAPTEPLLVATRKVIPPLGGVDVT
Sbjct: 121 SFLGPSLSVFSFLFIARIVMSWYPKLPVGKFPYVIAYAPTEPLLVATRKVIPPLGGVDVT 180

Query: 181 PVVWFGLISFLNEILLGPQGLLVLLSQQVS 210
           PVVWFGLISFLNEILLGPQGLLVLLSQQVS
Sbjct: 181 PVVWFGLISFLNEILLGPQGLLVLLSQQVS 210

[Close]

BLAST of CsGy7G016070 vs. NCBI nr
Match: XP_031745003.1 (protein COFACTOR ASSEMBLY OF COMPLEX C SUBUNIT B CCB3, chloroplastic isoform X2 [Cucumis sativus])

HSP 1 Score: 353 bits (907), Expect = 4.25e-122
Identity = 192/210 (91.43%), Postives = 192/210 (91.43%), Query Frame = 0


Query: 1   MAATACSSLSSIRVIGIGSSPLTPNHGNSNFCRGFKYHPQRNPNCKFQAIKCSSSLLGSF 60
           MAATACSSLSSIRVIG                  FKYHPQRNPNCKFQAIKCSSSLLGSF
Sbjct: 1   MAATACSSLSSIRVIG------------------FKYHPQRNPNCKFQAIKCSSSLLGSF 60

Query: 61  TSSKSLLSLAYVIPPLKPAAAYEAARTIPFTLQDASMAASDFVNSMTLADLDPGTAKLAI 120
           TSSKSLLSLAYVIPPLKPAAAYEAARTIPFTLQDASMAASDFVNSMTLADLDPGTAKLAI
Sbjct: 61  TSSKSLLSLAYVIPPLKPAAAYEAARTIPFTLQDASMAASDFVNSMTLADLDPGTAKLAI 120

Query: 121 SFLGPSLSVFSFLFIARIVMSWYPKLPVGKFPYVIAYAPTEPLLVATRKVIPPLGGVDVT 180
           SFLGPSLSVFSFLFIARIVMSWYPKLPVGKFPYVIAYAPTEPLLVATRKVIPPLGGVDVT
Sbjct: 121 SFLGPSLSVFSFLFIARIVMSWYPKLPVGKFPYVIAYAPTEPLLVATRKVIPPLGGVDVT 180

Query: 181 PVVWFGLISFLNEILLGPQGLLVLLSQQVS 210
           PVVWFGLISFLNEILLGPQGLLVLLSQQVS
Sbjct: 181 PVVWFGLISFLNEILLGPQGLLVLLSQQVS 192

[Close]

BLAST of CsGy7G016070 vs. NCBI nr
Match: XP_004136017.2 (protein COFACTOR ASSEMBLY OF COMPLEX C SUBUNIT B CCB3, chloroplastic isoform X3 [Cucumis sativus])

HSP 1 Score: 352 bits (903), Expect = 1.67e-121
Identity = 191/210 (90.95%), Postives = 191/210 (90.95%), Query Frame = 0


Query: 1   MAATACSSLSSIRVIGIGSSPLTPNHGNSNFCRGFKYHPQRNPNCKFQAIKCSSSLLGSF 60
           MAATACSSLSSIR                   RGFKYHPQRNPNCKFQAIKCSSSLLGSF
Sbjct: 1   MAATACSSLSSIR-------------------RGFKYHPQRNPNCKFQAIKCSSSLLGSF 60

Query: 61  TSSKSLLSLAYVIPPLKPAAAYEAARTIPFTLQDASMAASDFVNSMTLADLDPGTAKLAI 120
           TSSKSLLSLAYVIPPLKPAAAYEAARTIPFTLQDASMAASDFVNSMTLADLDPGTAKLAI
Sbjct: 61  TSSKSLLSLAYVIPPLKPAAAYEAARTIPFTLQDASMAASDFVNSMTLADLDPGTAKLAI 120

Query: 121 SFLGPSLSVFSFLFIARIVMSWYPKLPVGKFPYVIAYAPTEPLLVATRKVIPPLGGVDVT 180
           SFLGPSLSVFSFLFIARIVMSWYPKLPVGKFPYVIAYAPTEPLLVATRKVIPPLGGVDVT
Sbjct: 121 SFLGPSLSVFSFLFIARIVMSWYPKLPVGKFPYVIAYAPTEPLLVATRKVIPPLGGVDVT 180

Query: 181 PVVWFGLISFLNEILLGPQGLLVLLSQQVS 210
           PVVWFGLISFLNEILLGPQGLLVLLSQQVS
Sbjct: 181 PVVWFGLISFLNEILLGPQGLLVLLSQQVS 191

[Close]

BLAST of CsGy7G016070 vs. NCBI nr
Match: KAG6575811.1 (Protein COFACTOR ASSEMBLY OF COMPLEX C SUBUNIT B CCB3, chloroplastic, partial [Cucurbita argyrosperma subsp. sororia] >KAG7014353.1 Protein COFACTOR ASSEMBLY OF COMPLEX C SUBUNIT B CCB3, chloroplastic [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 350 bits (898), Expect = 1.58e-120
Identity = 180/210 (85.71%), Postives = 191/210 (90.95%), Query Frame = 0


Query: 1   MAATACSSLSSIRVIGIGSSPLTPNHGNSNFCRGFKYHPQRNPNCKFQAIKCSSSLLGSF 60
           MAATACSSLS+IRVIG+GSSPL PNHGNS+FCRGF YHPQ NPNC+FQA KCSSSLLGSF
Sbjct: 1   MAATACSSLSAIRVIGVGSSPLIPNHGNSSFCRGFNYHPQSNPNCRFQAFKCSSSLLGSF 60

Query: 61  TSSKSLLSLAYVIPPLKPAAAYEAARTIPFTLQDASMAASDFVNSMTLADLDPGTAKLAI 120
           TSSK  L L Y  PPLKPAA     RTIPF LQDAS+AASDF+N+++LADLDPGTAKLAI
Sbjct: 61  TSSKIHLPLVYATPPLKPAA-----RTIPFALQDASVAASDFMNNVSLADLDPGTAKLAI 120

Query: 121 SFLGPSLSVFSFLFIARIVMSWYPKLPVGKFPYVIAYAPTEPLLVATRKVIPPLGGVDVT 180
            FLGP LS FSFLFIARIVMSWYPKLPVGKFPYVIAYAPTEPLL+ATRKVIPPLGGVDVT
Sbjct: 121 GFLGPFLSAFSFLFIARIVMSWYPKLPVGKFPYVIAYAPTEPLLIATRKVIPPLGGVDVT 180

Query: 181 PVVWFGLISFLNEILLGPQGLLVLLSQQVS 210
           PVVWFGL+SFLNEILLGPQGLLVLLSQQVS
Sbjct: 181 PVVWFGLVSFLNEILLGPQGLLVLLSQQVS 205

[Close]

BLAST of CsGy7G016070 vs. NCBI nr
Match: XP_023548987.1 (protein COFACTOR ASSEMBLY OF COMPLEX C SUBUNIT B CCB3, chloroplastic isoform X1 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 349 bits (895), Expect = 4.53e-120
Identity = 180/210 (85.71%), Postives = 189/210 (90.00%), Query Frame = 0


Query: 1   MAATACSSLSSIRVIGIGSSPLTPNHGNSNFCRGFKYHPQRNPNCKFQAIKCSSSLLGSF 60
           MAATACSSLS+IRVIG+GSSPL PNHGNS+FCRGF YHPQ NPNC+FQA KCSSSLLGSF
Sbjct: 1   MAATACSSLSAIRVIGVGSSPLIPNHGNSSFCRGFNYHPQSNPNCRFQAFKCSSSLLGSF 60

Query: 61  TSSKSLLSLAYVIPPLKPAAAYEAARTIPFTLQDASMAASDFVNSMTLADLDPGTAKLAI 120
           TSSK  L L Y  PPLKPAA     RTIPF LQDASMAASDF+N++ LADLDPGTAKLAI
Sbjct: 61  TSSKIHLPLVYATPPLKPAA-----RTIPFALQDASMAASDFMNNVALADLDPGTAKLAI 120

Query: 121 SFLGPSLSVFSFLFIARIVMSWYPKLPVGKFPYVIAYAPTEPLLVATRKVIPPLGGVDVT 180
             LGP LS FSFLFIARIVMSWYPKLPVGKFPYVIAYAPTEPLL+ATRKVIPPLGGVDVT
Sbjct: 121 GLLGPFLSAFSFLFIARIVMSWYPKLPVGKFPYVIAYAPTEPLLIATRKVIPPLGGVDVT 180

Query: 181 PVVWFGLISFLNEILLGPQGLLVLLSQQVS 210
           PVVWFGL+SFLNEILLGPQGLLVLLSQQVS
Sbjct: 181 PVVWFGLVSFLNEILLGPQGLLVLLSQQVS 205

[Close]

BLAST of CsGy7G016070 vs. ExPASy TrEMBL
Match: A0A0A0K9A7 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G398190 PE=4 SV=1)

HSP 1 Score: 404 bits (1038), Expect = 4.19e-142
Identity = 210/210 (100.00%), Postives = 210/210 (100.00%), Query Frame = 0


Query: 1   MAATACSSLSSIRVIGIGSSPLTPNHGNSNFCRGFKYHPQRNPNCKFQAIKCSSSLLGSF 60
           MAATACSSLSSIRVIGIGSSPLTPNHGNSNFCRGFKYHPQRNPNCKFQAIKCSSSLLGSF
Sbjct: 1   MAATACSSLSSIRVIGIGSSPLTPNHGNSNFCRGFKYHPQRNPNCKFQAIKCSSSLLGSF 60

Query: 61  TSSKSLLSLAYVIPPLKPAAAYEAARTIPFTLQDASMAASDFVNSMTLADLDPGTAKLAI 120
           TSSKSLLSLAYVIPPLKPAAAYEAARTIPFTLQDASMAASDFVNSMTLADLDPGTAKLAI
Sbjct: 61  TSSKSLLSLAYVIPPLKPAAAYEAARTIPFTLQDASMAASDFVNSMTLADLDPGTAKLAI 120

Query: 121 SFLGPSLSVFSFLFIARIVMSWYPKLPVGKFPYVIAYAPTEPLLVATRKVIPPLGGVDVT 180
           SFLGPSLSVFSFLFIARIVMSWYPKLPVGKFPYVIAYAPTEPLLVATRKVIPPLGGVDVT
Sbjct: 121 SFLGPSLSVFSFLFIARIVMSWYPKLPVGKFPYVIAYAPTEPLLVATRKVIPPLGGVDVT 180

Query: 181 PVVWFGLISFLNEILLGPQGLLVLLSQQVS 210
           PVVWFGLISFLNEILLGPQGLLVLLSQQVS
Sbjct: 181 PVVWFGLISFLNEILLGPQGLLVLLSQQVS 210

[Close]

BLAST of CsGy7G016070 vs. ExPASy TrEMBL
Match: A0A6J1JL88 (protein COFACTOR ASSEMBLY OF COMPLEX C SUBUNIT B CCB3, chloroplastic isoform X1 OS=Cucurbita maxima OX=3661 GN=LOC111487957 PE=4 SV=1)

HSP 1 Score: 337 bits (865), Expect = 8.16e-116
Identity = 177/210 (84.29%), Postives = 185/210 (88.10%), Query Frame = 0


Query: 1   MAATACSSLSSIRVIGIGSSPLTPNHGNSNFCRGFKYHPQRNPNCKFQAIKCSSSLLGSF 60
           MAATACSSLS+IRVIG+GSS L PNHGNS+ CRGF YHPQ NPNC+FQA KCSSSLLGSF
Sbjct: 1   MAATACSSLSAIRVIGVGSSLLIPNHGNSSLCRGFNYHPQSNPNCRFQAFKCSSSLLGSF 60

Query: 61  TSSKSLLSLAYVIPPLKPAAAYEAARTIPFTLQDASMAASDFVNSMTLADLDPGTAKLAI 120
           TSSK  L L    P LKPAA     RTIPF LQDASMAASDF N++ LADLDPGTAKLAI
Sbjct: 61  TSSKIPLPLVSATPLLKPAA-----RTIPFALQDASMAASDFTNNVALADLDPGTAKLAI 120

Query: 121 SFLGPSLSVFSFLFIARIVMSWYPKLPVGKFPYVIAYAPTEPLLVATRKVIPPLGGVDVT 180
            FLGP LS FSFLFIARIVMSWYPKLPVGKFPYVIAYAPTEPLL+ATRKVIPPLGGVDVT
Sbjct: 121 GFLGPFLSAFSFLFIARIVMSWYPKLPVGKFPYVIAYAPTEPLLIATRKVIPPLGGVDVT 180

Query: 181 PVVWFGLISFLNEILLGPQGLLVLLSQQVS 210
           PVVWFGL+SFLNEILLGPQGLLVLLSQQVS
Sbjct: 181 PVVWFGLVSFLNEILLGPQGLLVLLSQQVS 205

[Close]

BLAST of CsGy7G016070 vs. ExPASy TrEMBL
Match: A0A1S3BSI7 (protein COFACTOR ASSEMBLY OF COMPLEX C SUBUNIT B CCB3, chloroplastic OS=Cucumis melo OX=3656 GN=LOC103492796 PE=4 SV=1)

HSP 1 Score: 335 bits (860), Expect = 2.99e-115
Identity = 185/211 (87.68%), Postives = 187/211 (88.63%), Query Frame = 0


Query: 1   MAATA-CSSLSSIRVIGIGSSPLTPNHGNSNFCRGFKYHPQRNPNCKFQAIKCSSSLLGS 60
           MAATA CSSLSSIR                   RGFKYHPQRNPN KFQAIKCSSSLLGS
Sbjct: 1   MAATAACSSLSSIR-------------------RGFKYHPQRNPNYKFQAIKCSSSLLGS 60

Query: 61  FTSSKSLLSLAYVIPPLKPAAAYEAARTIPFTLQDASMAASDFVNSMTLADLDPGTAKLA 120
           FTSSK L SLAYVIPPLKPAAAYEAARTIPF LQDASMAASDFVNSMTLADLDPGTAKLA
Sbjct: 61  FTSSKILPSLAYVIPPLKPAAAYEAARTIPFALQDASMAASDFVNSMTLADLDPGTAKLA 120

Query: 121 ISFLGPSLSVFSFLFIARIVMSWYPKLPVGKFPYVIAYAPTEPLLVATRKVIPPLGGVDV 180
           ISFLGPSLSVFSFLFIARIVMSWYPKLPVGKFPYVIAYAPTEPLL+ATRKVIPPLGGVDV
Sbjct: 121 ISFLGPSLSVFSFLFIARIVMSWYPKLPVGKFPYVIAYAPTEPLLIATRKVIPPLGGVDV 180

Query: 181 TPVVWFGLISFLNEILLGPQGLLVLLSQQVS 210
           TPVVWFGL+SFLNEILLGPQGLLVLLSQQVS
Sbjct: 181 TPVVWFGLVSFLNEILLGPQGLLVLLSQQVS 192

[Close]

BLAST of CsGy7G016070 vs. ExPASy TrEMBL
Match: A0A5A7VQJ0 (Protein COFACTOR ASSEMBLY OF COMPLEX C SUBUNIT B CCB3 OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold138G001630 PE=4 SV=1)

HSP 1 Score: 331 bits (849), Expect = 1.94e-113
Identity = 172/178 (96.63%), Postives = 174/178 (97.75%), Query Frame = 0


Query: 33  RGFKYHPQRNPNCKFQAIKCSSSLLGSFTSSKSLLSLAYVIPPLKPAAAYEAARTIPFTL 92
           RGFKYHPQRNPN KFQAIKCSSSLLGSFTSSK L SLAYVIPPLKPAAAYEAARTIPF L
Sbjct: 24  RGFKYHPQRNPNYKFQAIKCSSSLLGSFTSSKILPSLAYVIPPLKPAAAYEAARTIPFAL 83

Query: 93  QDASMAASDFVNSMTLADLDPGTAKLAISFLGPSLSVFSFLFIARIVMSWYPKLPVGKFP 152
           QDASMAASDFVNSMTLADLDPGTAKLAISFLGPSLSVFSFLFIARIVMSWYPKLPVGKFP
Sbjct: 84  QDASMAASDFVNSMTLADLDPGTAKLAISFLGPSLSVFSFLFIARIVMSWYPKLPVGKFP 143

Query: 153 YVIAYAPTEPLLVATRKVIPPLGGVDVTPVVWFGLISFLNEILLGPQGLLVLLSQQVS 210
           YVIAYAPTEPLL+ATRKVIPPLGGVDVTPVVWFGL+SFLNEILLGPQGLLVLLSQQVS
Sbjct: 144 YVIAYAPTEPLLIATRKVIPPLGGVDVTPVVWFGLVSFLNEILLGPQGLLVLLSQQVS 201

[Close]

BLAST of CsGy7G016070 vs. ExPASy TrEMBL
Match: A0A5D3D3A7 (Protein COFACTOR ASSEMBLY OF COMPLEX C SUBUNIT B CCB3 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold411G00790 PE=4 SV=1)

HSP 1 Score: 330 bits (845), Expect = 7.90e-113
Identity = 171/178 (96.07%), Postives = 174/178 (97.75%), Query Frame = 0


Query: 33  RGFKYHPQRNPNCKFQAIKCSSSLLGSFTSSKSLLSLAYVIPPLKPAAAYEAARTIPFTL 92
           RGFKYHPQRNPN KFQAIKCSSSLLGSFTSSK L SLAYVIPPLKPAAAYEAARTIPF L
Sbjct: 24  RGFKYHPQRNPNYKFQAIKCSSSLLGSFTSSKILPSLAYVIPPLKPAAAYEAARTIPFAL 83

Query: 93  QDASMAASDFVNSMTLADLDPGTAKLAISFLGPSLSVFSFLFIARIVMSWYPKLPVGKFP 152
           +DASMAASDFVNSMTLADLDPGTAKLAISFLGPSLSVFSFLFIARIVMSWYPKLPVGKFP
Sbjct: 84  RDASMAASDFVNSMTLADLDPGTAKLAISFLGPSLSVFSFLFIARIVMSWYPKLPVGKFP 143

Query: 153 YVIAYAPTEPLLVATRKVIPPLGGVDVTPVVWFGLISFLNEILLGPQGLLVLLSQQVS 210
           YVIAYAPTEPLL+ATRKVIPPLGGVDVTPVVWFGL+SFLNEILLGPQGLLVLLSQQVS
Sbjct: 144 YVIAYAPTEPLLIATRKVIPPLGGVDVTPVVWFGLVSFLNEILLGPQGLLVLLSQQVS 201

[Close]

BLAST of CsGy7G016070 vs. TAIR 10
Match: AT5G36120.1 (cofactor assembly, complex C (B6F) )

HSP 1 Score: 179.1 bits (453), Expect = 3.7e-45
Identity = 93/126 (73.81%), Postives = 106/126 (84.13%), Query Frame = 0


Query: 83  EAARTIPFTLQDASMAASDFVNSMTLADLDPGTAKLAISFLGPSLSVFSFLFIARIVMSW 142
           EAA T     Q  S+  S+ + +++LADLDPGTAKLAI  LGP+LS F FLFI RIVMSW
Sbjct: 48  EAATTTNLIRQTNSI--SESLRNISLADLDPGTAKLAIGILGPALSAFGFLFILRIVMSW 107

Query: 143 YPKLPVGKFPYVIAYAPTEPLLVATRKVIPPLGGVDVTPVVWFGLISFLNEILLGPQGLL 202
           YPKLPV KFPYV+AYAPTEP+LV TRKVIPPL GVDVTPVVWFGL+SFL+EIL+GPQGLL
Sbjct: 108 YPKLPVDKFPYVLAYAPTEPILVQTRKVIPPLAGVDVTPVVWFGLVSFLSEILVGPQGLL 167

Query: 203 VLLSQQ 209
           VL+SQQ
Sbjct: 168 VLVSQQ 171

[Close]

BLAST of CsGy7G016070 vs. TAIR 10
Match: AT3G07430.1 (YGGT family protein )

HSP 1 Score: 45.1 bits (105), Expect = 8.4e-05
Identity = 40/156 (25.64%), Postives = 74/156 (47.44%), Query Frame = 0


Query: 53  SSSLLGSFTSSKSLLSLAYVIPPLKPAAAYEAARTIPFTLQDA---SMAASDFVNSMTLA 112
           SS+L GS  S  +L +LA  +  +       A +T    + D    S++ +  V   +L 
Sbjct: 77  SSTLTGSTRSLATLAALAIAVTRVLAQKLSLAIQTSSPVIADGLRFSLSTAGPVFFASLR 136

Query: 113 DLDPGTAKLAISFLGPS----LSVFSFLFIARIVMSWYPKLPVGKFPYVIAYAPTEPLLV 172
           D  PG     ++ +       L ++S + + R+++SW+P +P  + P        +P L 
Sbjct: 137 DRPPGYLNTPLTVVAVGIKKWLDIYSGVLMVRVLLSWFPNIPWERQPLSAIRDLCDPYLN 196

Query: 173 ATRKVIPPL-GGVDVTPVVWFGLISFLNEILLGPQG 201
             R +IPP+   +DV+P++ F ++  L  I+ G  G
Sbjct: 197 LFRNIIPPIFDTLDVSPLLAFAVLGTLGSIVHGSTG 232

[Close]

BLAST of CsGy7G016070 vs. TAIR 10
Match: AT4G27990.1 (YGGT family protein )

HSP 1 Score: 42.4 bits (98), Expect = 5.4e-04
Identity = 22/75 (29.33%), Postives = 42/75 (56.00%), Query Frame = 0


Query: 127 LSVFSFLFIARIVMSWYPKLPVGKFPYVIAYAPTEPLLVATRKVIPPL-GGVDVTPVVWF 186
           L ++S + + R+++SW+P +P  + P        +P L   R +IPP+   +DV+P++ F
Sbjct: 144 LDIYSGVLMVRVLLSWFPNIPWDRQPLSAIRDLCDPYLNLFRNIIPPVFDTLDVSPLLAF 203

Query: 187 GLISFLNEILLGPQG 201
            ++  L  IL   +G
Sbjct: 204 AVLGTLGSILNNSRG 218

The following BLAST results are available for this feature:

BLAST of CsGy7G016070 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q8RWM7	5.2e-44	73.81	Protein COFACTOR ASSEMBLY OF COMPLEX C SUBUNIT B CCB3, chloroplastic OS=Arabidop...	[more]

BLAST of CsGy7G016070 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_004136016.2	8.65e-142	100.00	protein COFACTOR ASSEMBLY OF COMPLEX C SUBUNIT B CCB3, chloroplastic isoform X1 ...	[more]
XP_031745003.1	4.25e-122	91.43	protein COFACTOR ASSEMBLY OF COMPLEX C SUBUNIT B CCB3, chloroplastic isoform X2 ...	[more]
XP_004136017.2	1.67e-121	90.95	protein COFACTOR ASSEMBLY OF COMPLEX C SUBUNIT B CCB3, chloroplastic isoform X3 ...	[more]
KAG6575811.1	1.58e-120	85.71	Protein COFACTOR ASSEMBLY OF COMPLEX C SUBUNIT B CCB3, chloroplastic, partial [C...	[more]
XP_023548987.1	4.53e-120	85.71	protein COFACTOR ASSEMBLY OF COMPLEX C SUBUNIT B CCB3, chloroplastic isoform X1 ...	[more]

BLAST of CsGy7G016070 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0K9A7	4.19e-142	100.00	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G398190 PE=4 SV=1	[more]
A0A6J1JL88	8.16e-116	84.29	protein COFACTOR ASSEMBLY OF COMPLEX C SUBUNIT B CCB3, chloroplastic isoform X1 ...	[more]
A0A1S3BSI7	2.99e-115	87.68	protein COFACTOR ASSEMBLY OF COMPLEX C SUBUNIT B CCB3, chloroplastic OS=Cucumis ...	[more]
A0A5A7VQJ0	1.94e-113	96.63	Protein COFACTOR ASSEMBLY OF COMPLEX C SUBUNIT B CCB3 OS=Cucumis melo var. makuw...	[more]
A0A5D3D3A7	7.90e-113	96.07	Protein COFACTOR ASSEMBLY OF COMPLEX C SUBUNIT B CCB3 OS=Cucumis melo var. makuw...	[more]

BLAST of CsGy7G016070 vs. TAIR 10


Match Name	E-value	Identity	Description
AT5G36120.1	3.7e-45	73.81	cofactor assembly, complex C (B6F)	[more]
AT3G07430.1	8.4e-05	25.64	YGGT family protein	[more]
AT4G27990.1	5.4e-04	29.33	YGGT family protein	[more]

InterPro

Analysis Name: InterPro Annotations of Cucumber (Gy14) v2.1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR003425	CCB3/YggT	PFAM	PF02325	YGGT	coord: 127..195 e-value: 6.0E-15 score: 55.4
IPR003425	CCB3/YggT	PANTHER	PTHR33219	YLMG HOMOLOG PROTEIN 2, CHLOROPLASTIC	coord: 12..209
None	No IPR available	PANTHER	PTHR33219:SF11	PROTEIN COFACTOR ASSEMBLY OF COMPLEX C SUBUNIT B CCB3, CHLOROPLASTIC	coord: 12..209

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CsGy7G016070.2	CsGy7G016070.2	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
cellular_component	GO:0016021	integral component of membrane
cellular_component	GO:0016020	membrane