CsGy7G012590 (gene) Cucumber (Gy14) v2.1

Overview


Name	CsGy7G012590
Type	gene
Organism	Cucumis sativus L. var. sativus cv. Gy14 (Cucumber (Gy14) v2.1)
Description	LOW QUALITY PROTEIN: putative pentatricopeptide repeat-containing protein At3g23330
Location	Gy14Chr7: 16270486 .. 16270780 (+)
RNA-Seq Expression	CsGy7G012590
Synteny	CsGy7G012590

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGGTTTGCGTTCAAACCCTACTGCAACCCTCTCTCTTCTTCTTTTCTCCTCTTCCTTCTTCTTCCCTCTCTTTGCCTCCGTTCAGGTATTCATCTTACATTTCTCTTCTCTTTTGTTTTTTTATGGCGTTCTTAATGGGGTTTGATTTTTATTGCTTCTTTGGTGTTTTTCAGGTGTATTCTGCGGAAGTGGAGAAAGATGAGTTGGATGGACCTAAAGATCTCGGTCGATGTAGCAAGGTCAGTACAATTCCTTGTCGGCCATGGCTAGAGGTTGGTTTGGGGTTATATTGA

mRNA sequence

ATGGGTTTGCGTTCAAACCCTACTGCAACCCTCTCTCTTCTTCTTTTCTCCTCTTCCTTCTTCTTCCCTCTCTTTGCCTCCGTTCAGGTGTATTCTGCGGAAGTGGAGAAAGATGAGTTGGATGGACCTAAAGATCTCGGTCGATGTAGCAAGGTCAGTACAATTCCTTGTCGGCCATGGCTAGAGGTTGGTTTGGGGTTATATTGA

Coding sequence (CDS)

ATGGGTTTGCGTTCAAACCCTACTGCAACCCTCTCTCTTCTTCTTTTCTCCTCTTCCTTCTTCTTCCCTCTCTTTGCCTCCGTTCAGGTGTATTCTGCGGAAGTGGAGAAAGATGAGTTGGATGGACCTAAAGATCTCGGTCGATGTAGCAAGGTCAGTACAATTCCTTGTCGGCCATGGCTAGAGGTTGGTTTGGGGTTATATTGA

Protein sequence

MGLRSNPTATLSLLLFSSSFFFPLFASVQVYSAEVEKDELDGPKDLGRCSKVSTIPCRPWLEVGLGLY*

Homology

[Close]

BLAST of CsGy7G012590 vs. NCBI nr
Match: KAE8646234.1 (hypothetical protein Csa_016443 [Cucumis sativus])

HSP 1 Score: 139 bits (351), Expect = 1.38e-41
Identity = 68/68 (100.00%), Postives = 68/68 (100.00%), Query Frame = 0


Query: 1  MGLRSNPTATLSLLLFSSSFFFPLFASVQVYSAEVEKDELDGPKDLGRCSKVSTIPCRPW 60
          MGLRSNPTATLSLLLFSSSFFFPLFASVQVYSAEVEKDELDGPKDLGRCSKVSTIPCRPW
Sbjct: 1  MGLRSNPTATLSLLLFSSSFFFPLFASVQVYSAEVEKDELDGPKDLGRCSKVSTIPCRPW 60

Query: 61 LEVGLGLY 68
          LEVGLGLY
Sbjct: 61 LEVGLGLY 68

[Close]

BLAST of CsGy7G012590 vs. NCBI nr
Match: XP_038889550.1 (GDT1-like protein 4 [Benincasa hispida])

HSP 1 Score: 73.6 bits (179), Expect = 1.87e-13
Identity = 43/58 (74.14%), Postives = 45/58 (77.59%), Query Frame = 0


Query: 1  MGLRSNPTATLSLLLFSSSFFF-----PLFASVQVYSAEVEKDELDGPKDLGRCSKVS 53
          MGLRSNPTA LS   FSSSF        LFAS+QVYSAEVEKDELDGPKDLGR SK+S
Sbjct: 1  MGLRSNPTANLS---FSSSFLLLLLLLSLFASLQVYSAEVEKDELDGPKDLGRRSKIS 55

[Close]

BLAST of CsGy7G012590 vs. NCBI nr
Match: KGN61261.1 (hypothetical protein Csa_006241 [Cucumis sativus])

HSP 1 Score: 73.2 bits (178), Expect = 2.60e-13
Identity = 43/58 (74.14%), Postives = 46/58 (79.31%), Query Frame = 0


Query: 1  MGLRSNPTATLSLLLFSSSF-----FFPLFASVQVYSAEVEKDELDGPKDLGRCSKVS 53
          MGLRSNPTATLS   FS+SF     F  LFAS QVYSAEVEKD+LDGPKDLGR SK+S
Sbjct: 1  MGLRSNPTATLS---FSASFLLFLLFLSLFASHQVYSAEVEKDDLDGPKDLGRRSKMS 55

[Close]

BLAST of CsGy7G012590 vs. NCBI nr
Match: XP_011648996.1 (LOW QUALITY PROTEIN: putative pentatricopeptide repeat-containing protein At3g23330 [Cucumis sativus])

HSP 1 Score: 73.2 bits (178), Expect = 5.00e-13
Identity = 43/58 (74.14%), Postives = 46/58 (79.31%), Query Frame = 0


Query: 1  MGLRSNPTATLSLLLFSSSF-----FFPLFASVQVYSAEVEKDELDGPKDLGRCSKVS 53
          MGLRSNPTATLS   FS+SF     F  LFAS QVYSAEVEKD+LDGPKDLGR SK+S
Sbjct: 1  MGLRSNPTATLS---FSASFLLFLLFLSLFASHQVYSAEVEKDDLDGPKDLGRRSKMS 55

[Close]

BLAST of CsGy7G012590 vs. NCBI nr
Match: KAA0049878.1 (putative pentatricopeptide repeat-containing protein [Cucumis melo var. makuwa] >TYK07616.1 putative pentatricopeptide repeat-containing protein [Cucumis melo var. makuwa])

HSP 1 Score: 71.2 bits (173), Expect = 1.34e-12
Identity = 41/58 (70.69%), Postives = 43/58 (74.14%), Query Frame = 0


Query: 1  MGLRSNPTATLSLLLFSSSFFF-----PLFASVQVYSAEVEKDELDGPKDLGRCSKVS 53
          MGLRSNPT TLS   FS SF        LFAS+QVYSAE EKDELDGPKDLGR SK+S
Sbjct: 1  MGLRSNPTTTLS---FSPSFLLFLLLLSLFASIQVYSAEAEKDELDGPKDLGRRSKIS 55

[Close]

BLAST of CsGy7G012590 vs. ExPASy TrEMBL
Match: A0A0A0K4H3 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G336440 PE=4 SV=1)

HSP 1 Score: 101 bits (252), Expect = 9.73e-26
Identity = 51/55 (92.73%), Postives = 53/55 (96.36%), Query Frame = 0


Query: 1  MGLRSNPTATLSLLLFSSSFFFPLFASVQVYSAEVEKDELDGPKDLGRCSKVSTI 55
          MGLRSNPTATLSLLLFSSSFFFPLFASVQVYSAEVEKD+LDGPKDLGRCSK S +
Sbjct: 1  MGLRSNPTATLSLLLFSSSFFFPLFASVQVYSAEVEKDDLDGPKDLGRCSKFSFL 55

[Close]

BLAST of CsGy7G012590 vs. ExPASy TrEMBL
Match: A0A0A0LMQ4 (GDT1 family protein OS=Cucumis sativus OX=3659 GN=Csa_2G074220 PE=3 SV=1)

HSP 1 Score: 73.2 bits (178), Expect = 1.26e-13
Identity = 43/58 (74.14%), Postives = 46/58 (79.31%), Query Frame = 0


Query: 1  MGLRSNPTATLSLLLFSSSF-----FFPLFASVQVYSAEVEKDELDGPKDLGRCSKVS 53
          MGLRSNPTATLS   FS+SF     F  LFAS QVYSAEVEKD+LDGPKDLGR SK+S
Sbjct: 1  MGLRSNPTATLS---FSASFLLFLLFLSLFASHQVYSAEVEKDDLDGPKDLGRRSKMS 55

[Close]

BLAST of CsGy7G012590 vs. ExPASy TrEMBL
Match: A0A5A7U3P6 (GDT1 family protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold105G00130 PE=3 SV=1)

HSP 1 Score: 71.2 bits (173), Expect = 6.50e-13
Identity = 41/58 (70.69%), Postives = 43/58 (74.14%), Query Frame = 0


Query: 1  MGLRSNPTATLSLLLFSSSFFF-----PLFASVQVYSAEVEKDELDGPKDLGRCSKVS 53
          MGLRSNPT TLS   FS SF        LFAS+QVYSAE EKDELDGPKDLGR SK+S
Sbjct: 1  MGLRSNPTTTLS---FSPSFLLFLLLLSLFASIQVYSAEAEKDELDGPKDLGRRSKIS 55

[Close]

BLAST of CsGy7G012590 vs. ExPASy TrEMBL
Match: A0A1S3B4E3 (LOW QUALITY PROTEIN: putative pentatricopeptide repeat-containing protein At3g23330 OS=Cucumis melo OX=3656 GN=LOC103485889 PE=3 SV=1)

HSP 1 Score: 71.2 bits (173), Expect = 1.15e-12
Identity = 41/58 (70.69%), Postives = 43/58 (74.14%), Query Frame = 0


Query: 1  MGLRSNPTATLSLLLFSSSFFF-----PLFASVQVYSAEVEKDELDGPKDLGRCSKVS 53
          MGLRSNPT TLS   FS SF        LFAS+QVYSAE EKDELDGPKDLGR SK+S
Sbjct: 1  MGLRSNPTTTLS---FSPSFLLFLLLLSLFASIQVYSAEAEKDELDGPKDLGRRSKIS 55

[Close]

BLAST of CsGy7G012590 vs. ExPASy TrEMBL
Match: A0A6J1KA70 (putative pentatricopeptide repeat-containing protein At3g23330 OS=Cucurbita maxima OX=3661 GN=LOC111492492 PE=3 SV=1)

HSP 1 Score: 67.4 bits (163), Expect = 2.62e-11
Identity = 40/58 (68.97%), Postives = 42/58 (72.41%), Query Frame = 0


Query: 1  MGLRSNPTATLSLLLFSSSFFF-----PLFASVQVYSAEVEKDELDGPKDLGRCSKVS 53
          MGLRSNPT  LS   FS S         LFASVQVYSAEVEK+ELDGPKDLGR SK+S
Sbjct: 1  MGLRSNPTGNLS---FSPSLILLLLLVSLFASVQVYSAEVEKEELDGPKDLGRRSKIS 55

The following BLAST results are available for this feature:

BLAST of CsGy7G012590 vs.


Match Name	E-value	Identity	Description

BLAST of CsGy7G012590 vs. NCBI nr


Match Name	E-value	Identity	Description
KAE8646234.1	1.38e-41	100.00	hypothetical protein Csa_016443 [Cucumis sativus]	[more]
XP_038889550.1	1.87e-13	74.14	GDT1-like protein 4 [Benincasa hispida]	[more]
KGN61261.1	2.60e-13	74.14	hypothetical protein Csa_006241 [Cucumis sativus]	[more]
XP_011648996.1	5.00e-13	74.14	LOW QUALITY PROTEIN: putative pentatricopeptide repeat-containing protein At3g23...	[more]
KAA0049878.1	1.34e-12	70.69	putative pentatricopeptide repeat-containing protein [Cucumis melo var. makuwa] ...	[more]

BLAST of CsGy7G012590 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0K4H3	9.73e-26	92.73	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G336440 PE=4 SV=1	[more]
A0A0A0LMQ4	1.26e-13	74.14	GDT1 family protein OS=Cucumis sativus OX=3659 GN=Csa_2G074220 PE=3 SV=1	[more]
A0A5A7U3P6	6.50e-13	70.69	GDT1 family protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold105G...	[more]
A0A1S3B4E3	1.15e-12	70.69	LOW QUALITY PROTEIN: putative pentatricopeptide repeat-containing protein At3g23...	[more]
A0A6J1KA70	2.62e-11	68.97	putative pentatricopeptide repeat-containing protein At3g23330 OS=Cucurbita maxi...	[more]

BLAST of CsGy7G012590 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CsGy7G012590.1	CsGy7G012590.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0070588	calcium ion transmembrane transport
biological_process	GO:0032468	Golgi calcium ion homeostasis
biological_process	GO:0032472	Golgi calcium ion transport
biological_process	GO:0071421	manganese ion transmembrane transport
cellular_component	GO:0005794	Golgi apparatus
cellular_component	GO:0016021	integral component of membrane
molecular_function	GO:0015085	calcium ion transmembrane transporter activity
molecular_function	GO:0005384	manganese ion transmembrane transporter activity