CsGy7G010350 (gene) Cucumber (Gy14) v2.1

Overview
NameCsGy7G010350
Typegene
OrganismCucumis sativus L. var. sativus cv. Gy14 (Cucumber (Gy14) v2.1)
DescriptionDefensin-like protein 3
LocationGy14Chr7: 13029791 .. 13030103 (+)
RNA-Seq ExpressionCsGy7G010350
SyntenyCsGy7G010350
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGTGGGAGAAGGATGGAGAAAGCTCACAGTTGTGCTGTTCATCTTGTTATCCCTTGCTTCCGGTAATGAGAGATCAATTTTGTATGTATTGTTAAAAAAATAATGAAAATAAATAGAGTAATTAATATATAATGGAAGGTGTGTTGGTGTTGTTGGTTCTTACAGGTTGGATGGTGGCGGAGACGGAAGGAAAGGTTTGCTACAGGCCGAGCCCAAGGTTGAAGGGAGTGTGTAGTTCGAACGACGATTGTATTGTAGTGTGCGATGGATTTTGCTCCCATGGAAAGTGCATGTGTGAAGTCCCTTGCTGA

mRNA sequence

ATGGTGGGAGAAGGATGGAGAAAGCTCACAGTTGTGCTGTTCATCTTGTTATCCCTTGCTTCCGGTGTGTTGGTGTTGTTGGTTCTTACAGGTTGGATGGTGGCGGAGACGGAAGGAAAGGTTTGCTACAGGCCGAGCCCAAGGTTGAAGGGAGTGTGTAGTTCGAACGACGATTGTATTGTAGTGTGCGATGGATTTTGCTCCCATGGAAAGTGCATGTGTGAAGTCCCTTGCTGA

Coding sequence (CDS)

ATGGTGGGAGAAGGATGGAGAAAGCTCACAGTTGTGCTGTTCATCTTGTTATCCCTTGCTTCCGGTGTGTTGGTGTTGTTGGTTCTTACAGGTTGGATGGTGGCGGAGACGGAAGGAAAGGTTTGCTACAGGCCGAGCCCAAGGTTGAAGGGAGTGTGTAGTTCGAACGACGATTGTATTGTAGTGTGCGATGGATTTTGCTCCCATGGAAAGTGCATGTGTGAAGTCCCTTGCTGA

Protein sequence

MVGEGWRKLTVVLFILLSLASGVLVLLVLTGWMVAETEGKVCYRPSPRLKGVCSSNDDCIVVCDGFCSHGKCMCEVPC*
Homology
BLAST of CsGy7G010350 vs. NCBI nr
Match: XP_031744629.1 (defensin-1-like [Cucumis sativus])

HSP 1 Score: 140 bits (352), Expect = 1.52e-41
Identity = 67/78 (85.90%), Postives = 68/78 (87.18%), Query Frame = 0

Query: 1  MVGEGWRKLTVVLFILLSLASGVLVLLVLTGWMVAETEGKVCYRPSPRLKGVCSSNDDCI 60
          MVGEGWRKLTVVLFILLSLASG         WMVAETEG+VCYRPSPRLKGVCSSNDDCI
Sbjct: 1  MVGEGWRKLTVVLFILLSLASG---------WMVAETEGRVCYRPSPRLKGVCSSNDDCI 60

Query: 61 VVCDGFCSHGKCMCEVPC 78
           VCDGFCSHGKCMCEVPC
Sbjct: 61 AVCDGFCSHGKCMCEVPC 69

BLAST of CsGy7G010350 vs. NCBI nr
Match: AHA50469.1 (defensin-like protein 3 [Citrullus lanatus])

HSP 1 Score: 110 bits (275), Expect = 8.76e-30
Identity = 51/75 (68.00%), Postives = 57/75 (76.00%), Query Frame = 0

Query: 4  EGWRKLTVVLFILLSLASGVLVLLVLTGWMVAETEGKVCYRPSPRLKGVCSSNDDCIVVC 63
          E WRKLT+VLFI LSLASG         WMVAETEG+ CYRPSP  KG CSS++DCI VC
Sbjct: 5  EEWRKLTIVLFIFLSLASG---------WMVAETEGRACYRPSPSFKGRCSSDEDCIGVC 64

Query: 64 DGFCSHGKCMCEVPC 78
          DGFC+HG C+C VPC
Sbjct: 65 DGFCNHGSCICTVPC 70

BLAST of CsGy7G010350 vs. NCBI nr
Match: KAA0062795.1 (defensin-like protein 3 [Cucumis melo var. makuwa] >TYJ96758.1 defensin-like protein 3 [Cucumis melo var. makuwa])

HSP 1 Score: 110 bits (274), Expect = 1.21e-29
Identity = 54/75 (72.00%), Postives = 59/75 (78.67%), Query Frame = 0

Query: 4  EGWRKLTVVLFILLSLASGVLVLLVLTGWMVAETEGKVCYRPSPRLKGVCSSNDDCIVVC 63
          EG RKLTVVL ILLS+ASG         WMVAETEG+VC+RP P LKGVCSS++DCI VC
Sbjct: 4  EGRRKLTVVLVILLSVASG---------WMVAETEGRVCFRPRPTLKGVCSSDEDCIAVC 63

Query: 64 DGFCSHGKCMCEVPC 78
          DGFCS GKCMC VPC
Sbjct: 64 DGFCSLGKCMCAVPC 69

BLAST of CsGy7G010350 vs. NCBI nr
Match: XP_038887289.1 (defensin-like protein 2 [Benincasa hispida])

HSP 1 Score: 92.8 bits (229), Expect = 1.04e-22
Identity = 45/84 (53.57%), Postives = 56/84 (66.67%), Query Frame = 0

Query: 1  MVGEGWRKLTVVLFILLSLASGVLVLLVLTGWMVAETEGKVCYRPSPRLKGVCSSNDDCI 60
          M GEGWRKLTVVLFI L+LASG         WMV ETEGK C++ SP  +G C+SN++C+
Sbjct: 1  MAGEGWRKLTVVLFIFLALASG---------WMVVETEGKTCFKQSPSFRGQCTSNNECV 60

Query: 61 VVCD------GFCSHGKCMCEVPC 78
            CD      G+CS+G C+C V C
Sbjct: 61 GACDNDMWYNGYCSNGLCICAVHC 75

BLAST of CsGy7G010350 vs. NCBI nr
Match: KAA0062794.1 (defensin-like protein 3 [Cucumis melo var. makuwa] >TYJ96759.1 defensin-like protein 3 [Cucumis melo var. makuwa])

HSP 1 Score: 80.9 bits (198), Expect = 5.33e-18
Identity = 38/79 (48.10%), Postives = 50/79 (63.29%), Query Frame = 0

Query: 6  WRKLTVVLFILLSLASGVLVLLVLTGWMVAETEGKVCYRPSPRLKGVCSSNDDCIVVCD- 65
          W+KLT V F+ LS+ASG         WM+ ETEGK+C++ SP  KG C+SND+C+  CD 
Sbjct: 5  WKKLTFVAFVFLSIASG---------WMMEETEGKICFKQSPSFKGKCTSNDECVKACDI 64

Query: 66 -----GFCSHGKCMCEVPC 78
               G CS+G C+C V C
Sbjct: 65 DMWYNGVCSNGLCICTVIC 74

BLAST of CsGy7G010350 vs. ExPASy TrEMBL
Match: W5RQN1 (Defensin-like protein 3 OS=Citrullus lanatus OX=3654 GN=PDF2.3 PE=2 SV=1)

HSP 1 Score: 110 bits (275), Expect = 4.24e-30
Identity = 51/75 (68.00%), Postives = 57/75 (76.00%), Query Frame = 0

Query: 4  EGWRKLTVVLFILLSLASGVLVLLVLTGWMVAETEGKVCYRPSPRLKGVCSSNDDCIVVC 63
          E WRKLT+VLFI LSLASG         WMVAETEG+ CYRPSP  KG CSS++DCI VC
Sbjct: 5  EEWRKLTIVLFIFLSLASG---------WMVAETEGRACYRPSPSFKGRCSSDEDCIGVC 64

Query: 64 DGFCSHGKCMCEVPC 78
          DGFC+HG C+C VPC
Sbjct: 65 DGFCNHGSCICTVPC 70

BLAST of CsGy7G010350 vs. ExPASy TrEMBL
Match: A0A5D3BEY4 (Defensin-like protein 3 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold986G00520 PE=4 SV=1)

HSP 1 Score: 110 bits (274), Expect = 5.86e-30
Identity = 54/75 (72.00%), Postives = 59/75 (78.67%), Query Frame = 0

Query: 4  EGWRKLTVVLFILLSLASGVLVLLVLTGWMVAETEGKVCYRPSPRLKGVCSSNDDCIVVC 63
          EG RKLTVVL ILLS+ASG         WMVAETEG+VC+RP P LKGVCSS++DCI VC
Sbjct: 4  EGRRKLTVVLVILLSVASG---------WMVAETEGRVCFRPRPTLKGVCSSDEDCIAVC 63

Query: 64 DGFCSHGKCMCEVPC 78
          DGFCS GKCMC VPC
Sbjct: 64 DGFCSLGKCMCAVPC 69

BLAST of CsGy7G010350 vs. ExPASy TrEMBL
Match: A0A5D3BCI9 (Defensin-like protein 3 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold986G00530 PE=4 SV=1)

HSP 1 Score: 80.9 bits (198), Expect = 2.58e-18
Identity = 38/79 (48.10%), Postives = 50/79 (63.29%), Query Frame = 0

Query: 6  WRKLTVVLFILLSLASGVLVLLVLTGWMVAETEGKVCYRPSPRLKGVCSSNDDCIVVCD- 65
          W+KLT V F+ LS+ASG         WM+ ETEGK+C++ SP  KG C+SND+C+  CD 
Sbjct: 5  WKKLTFVAFVFLSIASG---------WMMEETEGKICFKQSPSFKGKCTSNDECVKACDI 64

Query: 66 -----GFCSHGKCMCEVPC 78
               G CS+G C+C V C
Sbjct: 65 DMWYNGVCSNGLCICTVIC 74

BLAST of CsGy7G010350 vs. ExPASy TrEMBL
Match: A0A0A0K447 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G239060 PE=4 SV=1)

HSP 1 Score: 75.5 bits (184), Expect = 3.58e-16
Identity = 39/81 (48.15%), Postives = 50/81 (61.73%), Query Frame = 0

Query: 5  GWRKLTVVLFI-LLSLASGVLVLLVLTGWMVAETEGKVCYRPSPRLKGVCSSNDDCIVVC 64
          GW+KLT V FI LL++ASG         WM+ ET GK+C++ S   KG C SND+C+  C
Sbjct: 4  GWKKLTFVAFIFLLAIASG---------WMMVETAGKICFKQSRSFKGKCISNDECVKAC 63

Query: 65 D------GFCSHGKCMCEVPC 78
          D      GFCS+G C+C V C
Sbjct: 64 DTDMWYDGFCSNGLCICTVIC 75

BLAST of CsGy7G010350 vs. ExPASy TrEMBL
Match: A0A5A7V3H5 (Defensin-like protein 3 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold986G00550 PE=4 SV=1)

HSP 1 Score: 72.4 bits (176), Expect = 6.39e-15
Identity = 39/83 (46.99%), Postives = 47/83 (56.63%), Query Frame = 0

Query: 3  GEGWRKLTVVLFILLSLASGVLVLLVLTGWMVAETEGKVCYRPSPRLKGVCSSNDDCIVV 62
          GEG RKLTVV+ I L  ASG         WMV +TEG  CY+PS   +G C+S ++C  V
Sbjct: 3  GEGLRKLTVVVLIFLVFASG---------WMVVQTEGLTCYKPSTAFQGTCNSAEECGRV 62

Query: 63 C-------DGFCSHGKCMCEVPC 78
          C       DGFCS  KC+C   C
Sbjct: 63 CFYQEGWDDGFCSGDKCICTEKC 76

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
XP_031744629.11.52e-4185.90defensin-1-like [Cucumis sativus][more]
AHA50469.18.76e-3068.00defensin-like protein 3 [Citrullus lanatus][more]
KAA0062795.11.21e-2972.00defensin-like protein 3 [Cucumis melo var. makuwa] >TYJ96758.1 defensin-like pro... [more]
XP_038887289.11.04e-2253.57defensin-like protein 2 [Benincasa hispida][more]
KAA0062794.15.33e-1848.10defensin-like protein 3 [Cucumis melo var. makuwa] >TYJ96759.1 defensin-like pro... [more]
Match NameE-valueIdentityDescription
W5RQN14.24e-3068.00Defensin-like protein 3 OS=Citrullus lanatus OX=3654 GN=PDF2.3 PE=2 SV=1[more]
A0A5D3BEY45.86e-3072.00Defensin-like protein 3 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold... [more]
A0A5D3BCI92.58e-1848.10Defensin-like protein 3 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold... [more]
A0A0A0K4473.58e-1648.15Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G239060 PE=4 SV=1[more]
A0A5A7V3H56.39e-1546.99Defensin-like protein 3 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold... [more]
Match NameE-valueIdentityDescription
InterPro
Analysis Name: InterPro Annotations of Cucumber (Gy14) v2.1
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR036574Knottin, scorpion toxin-like superfamilyGENE3D3.30.30.10coord: 35..78
e-value: 1.1E-5
score: 27.2

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CsGy7G010350.2CsGy7G010350.2mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0006952 defense response