CsGy7G009575 (gene) Cucumber (Gy14) v2.1

Overview
NameCsGy7G009575
Typegene
OrganismCucumis sativus L. var. sativus cv. Gy14 (Cucumber (Gy14) v2.1)
DescriptionGlutamate-gated kainate-type ion channel receptor subunit GluR5
LocationGy14Chr7: 12077043 .. 12077276 (-)
RNA-Seq ExpressionCsGy7G009575
SyntenyCsGy7G009575
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGTTACTTTCTTTCAACTTTAGATTCATTCTCTTCTTAACACTTGTTCTCGCTCTCACCTCCATTTCCACAGACGCTGCGAGAGTTCCAACACCGTATTGGGAGCAGATGTTGCCTAAGAAGTTACCCTCTCCATCGTCTGCGCCGTCCAAAGGGACAAACACCGTCGCTCCGTCTTCTTCTAAACCTATGAAAGTTAACGGGAATCTGCCAGCAAAGGACGGTAACGTTTAG

mRNA sequence

ATGTTACTTTCTTTCAACTTTAGATTCATTCTCTTCTTAACACTTGTTCTCGCTCTCACCTCCATTTCCACAGACGCTGCGAGAGTTCCAACACCGTATTGGGAGCAGATGTTGCCTAAGAAGTTACCCTCTCCATCGTCTGCGCCGTCCAAAGGGACAAACACCGTCGCTCCGTCTTCTTCTAAACCTATGAAAGTTAACGGGAATCTGCCAGCAAAGGACGGTAACGTTTAG

Coding sequence (CDS)

ATGTTACTTTCTTTCAACTTTAGATTCATTCTCTTCTTAACACTTGTTCTCGCTCTCACCTCCATTTCCACAGACGCTGCGAGAGTTCCAACACCGTATTGGGAGCAGATGTTGCCTAAGAAGTTACCCTCTCCATCGTCTGCGCCGTCCAAAGGGACAAACACCGTCGCTCCGTCTTCTTCTAAACCTATGAAAGTTAACGGGAATCTGCCAGCAAAGGACGGTAACGTTTAG

Protein sequence

MLLSFNFRFILFLTLVLALTSISTDAARVPTPYWEQMLPKKLPSPSSAPSKGTNTVAPSSSKPMKVNGNLPAKDGNV*
Homology
BLAST of CsGy7G009575 vs. NCBI nr
Match: KAE8646070.1 (hypothetical protein Csa_015561 [Cucumis sativus])

HSP 1 Score: 147 bits (371), Expect = 2.30e-44
Identity = 77/77 (100.00%), Postives = 77/77 (100.00%), Query Frame = 0

Query: 1  MLLSFNFRFILFLTLVLALTSISTDAARVPTPYWEQMLPKKLPSPSSAPSKGTNTVAPSS 60
          MLLSFNFRFILFLTLVLALTSISTDAARVPTPYWEQMLPKKLPSPSSAPSKGTNTVAPSS
Sbjct: 1  MLLSFNFRFILFLTLVLALTSISTDAARVPTPYWEQMLPKKLPSPSSAPSKGTNTVAPSS 60

Query: 61 SKPMKVNGNLPAKDGNV 77
          SKPMKVNGNLPAKDGNV
Sbjct: 61 SKPMKVNGNLPAKDGNV 77

BLAST of CsGy7G009575 vs. NCBI nr
Match: TYK23265.1 (glutamate-gated kainate-type ion channel receptor subunit GluR5 [Cucumis melo var. makuwa])

HSP 1 Score: 144 bits (363), Expect = 3.83e-43
Identity = 74/77 (96.10%), Postives = 77/77 (100.00%), Query Frame = 0

Query: 1  MLLSFNFRFILFLTLVLALTSISTDAARVPTPYWEQMLPKKLPSPSSAPSKGTNTVAPSS 60
          MLL+FNFRFILFLTL+LALTSIS+DAARVPTPYWEQMLPKKLPSPSSAPSKGTNTVAPSS
Sbjct: 1  MLLAFNFRFILFLTLILALTSISSDAARVPTPYWEQMLPKKLPSPSSAPSKGTNTVAPSS 60

Query: 61 SKPMKVNGNLPAKDGNV 77
          SKPMKVNGNLPAKDGNV
Sbjct: 61 SKPMKVNGNLPAKDGNV 77

BLAST of CsGy7G009575 vs. NCBI nr
Match: KAG6607702.1 (hypothetical protein SDJN03_01044, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 100 bits (250), Expect = 2.42e-25
Identity = 55/73 (75.34%), Postives = 62/73 (84.93%), Query Frame = 0

Query: 1  MLLSFNFRFILFLTLVLALTSISTDAARVPTPYWEQMLPKKLPSPSSAPSKGTNTVAPSS 60
          M LSF  RFI  L LVLAL S+S++AARVPT YWEQMLPKKLP+PSSAPSKGTN+VA SS
Sbjct: 22 MFLSFRPRFIFILLLVLALASMSSEAARVPTKYWEQMLPKKLPTPSSAPSKGTNSVASSS 81

Query: 61 SKPMKVNGNLPAK 73
           K +KV+GNLPAK
Sbjct: 82 FKTVKVDGNLPAK 94

BLAST of CsGy7G009575 vs. NCBI nr
Match: EXC32449.1 (hypothetical protein L484_012616 [Morus notabilis])

HSP 1 Score: 75.1 bits (183), Expect = 1.04e-15
Identity = 42/68 (61.76%), Postives = 54/68 (79.41%), Query Frame = 0

Query: 11 LFLTLVLALTSISTDAARVPTPYWEQMLPKKLPSPSSAPSKGTNTVAPSSS-KPMKVNGN 70
          LFLTL+ AL  +S +A+R+P   WEQMLPKKLPSP+S+PSKGTN+V+ SSS K + V+ N
Sbjct: 10 LFLTLIFALVILS-EASRLPKSSWEQMLPKKLPSPNSSPSKGTNSVSTSSSSKEVNVDKN 69

Query: 71 LPAKDGNV 77
          LP+ DG V
Sbjct: 70 LPSSDGKV 76

BLAST of CsGy7G009575 vs. NCBI nr
Match: KAF9855135.1 (hypothetical protein H0E87_006638 [Populus deltoides])

HSP 1 Score: 73.9 bits (180), Expect = 2.89e-15
Identity = 36/62 (58.06%), Postives = 48/62 (77.42%), Query Frame = 0

Query: 16 VLALTSISTDAARVPTPYWEQMLPKKLPSPSSAPSKGTNTVAPSSSKPMKVNGNLPAKDG 75
          +LA   +S+DA+R+P  YWEQMLPKKLP+PSS+PSKGTN+V+ S S  +K + NL + DG
Sbjct: 14 LLAFVVLSSDASRLPKAYWEQMLPKKLPAPSSSPSKGTNSVSRSYSTTVKSDSNLSSSDG 73

Query: 76 NV 77
           V
Sbjct: 74 KV 75

BLAST of CsGy7G009575 vs. ExPASy TrEMBL
Match: A0A5D3DI56 (Glutamate-gated kainate-type ion channel receptor subunit GluR5 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold142G003180 PE=4 SV=1)

HSP 1 Score: 144 bits (363), Expect = 1.85e-43
Identity = 74/77 (96.10%), Postives = 77/77 (100.00%), Query Frame = 0

Query: 1  MLLSFNFRFILFLTLVLALTSISTDAARVPTPYWEQMLPKKLPSPSSAPSKGTNTVAPSS 60
          MLL+FNFRFILFLTL+LALTSIS+DAARVPTPYWEQMLPKKLPSPSSAPSKGTNTVAPSS
Sbjct: 1  MLLAFNFRFILFLTLILALTSISSDAARVPTPYWEQMLPKKLPSPSSAPSKGTNTVAPSS 60

Query: 61 SKPMKVNGNLPAKDGNV 77
          SKPMKVNGNLPAKDGNV
Sbjct: 61 SKPMKVNGNLPAKDGNV 77

BLAST of CsGy7G009575 vs. ExPASy TrEMBL
Match: A0A7N2MJW9 (Uncharacterized protein OS=Quercus lobata OX=97700 PE=4 SV=1)

HSP 1 Score: 77.0 bits (188), Expect = 8.26e-17
Identity = 35/54 (64.81%), Postives = 45/54 (83.33%), Query Frame = 0

Query: 24 TDAARVPTPYWEQMLPKKLPSPSSAPSKGTNTVAPSSSKPMKVNGNLPAKDGNV 77
          ++A+R+P  YWEQMLPKKLP PSS+PSKGTN+++ SSSK +K N NLP+ DG V
Sbjct: 21 SEASRLPKEYWEQMLPKKLPCPSSSPSKGTNSLSKSSSKALKANRNLPSSDGKV 74

BLAST of CsGy7G009575 vs. ExPASy TrEMBL
Match: W9S9P5 (Uncharacterized protein OS=Morus notabilis OX=981085 GN=L484_012616 PE=4 SV=1)

HSP 1 Score: 75.1 bits (183), Expect = 5.02e-16
Identity = 42/68 (61.76%), Postives = 54/68 (79.41%), Query Frame = 0

Query: 11 LFLTLVLALTSISTDAARVPTPYWEQMLPKKLPSPSSAPSKGTNTVAPSSS-KPMKVNGN 70
          LFLTL+ AL  +S +A+R+P   WEQMLPKKLPSP+S+PSKGTN+V+ SSS K + V+ N
Sbjct: 10 LFLTLIFALVILS-EASRLPKSSWEQMLPKKLPSPNSSPSKGTNSVSTSSSSKEVNVDKN 69

Query: 71 LPAKDGNV 77
          LP+ DG V
Sbjct: 70 LPSSDGKV 76

BLAST of CsGy7G009575 vs. ExPASy TrEMBL
Match: A0A803PR73 (Uncharacterized protein OS=Cannabis sativa OX=3483 PE=4 SV=1)

HSP 1 Score: 74.3 bits (181), Expect = 2.58e-15
Identity = 39/74 (52.70%), Postives = 56/74 (75.68%), Query Frame = 0

Query: 4   SFNFRFILFLTLVLALTSISTDAARVPTPYWEQMLPKKLPSPSSAPSKGTNTVAPSSSKP 63
           S+  ++ LF  L++A   +S +A+R+P  Y++QM+PKKLPSPSS+PSKGTN+V  SSSK 
Sbjct: 40  SWRQKYCLFFILLIAFIDLS-EASRLPKEYFKQMMPKKLPSPSSSPSKGTNSVTTSSSKA 99

Query: 64  MKVNGNLPAKDGNV 77
           +K + NLP+ DG V
Sbjct: 100 VKADANLPSFDGKV 112

BLAST of CsGy7G009575 vs. ExPASy TrEMBL
Match: A0A0S3RNK5 (Uncharacterized protein OS=Vigna angularis var. angularis OX=157739 GN=Vigan.03G214100 PE=4 SV=1)

HSP 1 Score: 73.2 bits (178), Expect = 2.68e-15
Identity = 41/74 (55.41%), Postives = 52/74 (70.27%), Query Frame = 0

Query: 4  SFNFRFILFLTLVLALTSISTDAARVPTPYWEQMLPKKLPSPSSAPSKGTNTVAPSSSKP 63
          S+  + +LF  L + L S   + +R+P  YWEQMLPKKLPSPSS+PSKGTN+V PSSS  
Sbjct: 4  SWKHQCLLFTLLAIVLLS---EGSRLPKEYWEQMLPKKLPSPSSSPSKGTNSVTPSSSST 63

Query: 64 MKVNGNLPAKDGNV 77
          M+ +G LP  DG V
Sbjct: 64 MENHG-LPTSDGKV 73

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
KAE8646070.12.30e-44100.00hypothetical protein Csa_015561 [Cucumis sativus][more]
TYK23265.13.83e-4396.10glutamate-gated kainate-type ion channel receptor subunit GluR5 [Cucumis melo va... [more]
KAG6607702.12.42e-2575.34hypothetical protein SDJN03_01044, partial [Cucurbita argyrosperma subsp. sorori... [more]
EXC32449.11.04e-1561.76hypothetical protein L484_012616 [Morus notabilis][more]
KAF9855135.12.89e-1558.06hypothetical protein H0E87_006638 [Populus deltoides][more]
Match NameE-valueIdentityDescription
A0A5D3DI561.85e-4396.10Glutamate-gated kainate-type ion channel receptor subunit GluR5 OS=Cucumis melo ... [more]
A0A7N2MJW98.26e-1764.81Uncharacterized protein OS=Quercus lobata OX=97700 PE=4 SV=1[more]
W9S9P55.02e-1661.76Uncharacterized protein OS=Morus notabilis OX=981085 GN=L484_012616 PE=4 SV=1[more]
A0A803PR732.58e-1552.70Uncharacterized protein OS=Cannabis sativa OX=3483 PE=4 SV=1[more]
A0A0S3RNK52.68e-1555.41Uncharacterized protein OS=Vigna angularis var. angularis OX=157739 GN=Vigan.03G... [more]
Match NameE-valueIdentityDescription
InterPro
Analysis Name: InterPro Annotations of Cucumber (Gy14) v2.1
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 46..66
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 38..77

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CsGy7G009575.1CsGy7G009575.1mRNA