CsGy7G006280 (gene) Cucumber (Gy14) v2.1

Overview


Name	CsGy7G006280
Type	gene
Organism	Cucumis sativus L. var. sativus cv. Gy14 (Cucumber (Gy14) v2.1)
Description	protein SHORT HYPOCOTYL IN WHITE LIGHT 1-like
Location	Gy14Chr7: 4640055 .. 4643507 (-)
RNA-Seq Expression	CsGy7G006280
Synteny	CsGy7G006280

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

GAGAAATTATGTATAAGTAATTCTAAAACTGCTTCATCCTTTCGAACAACAAACAAAATCACCTGAGCCCGTAAACTACTCTTTCTTCTTCAACAACTGACTATGTCCTTACCTGCCGTTCTTTCACCGCCGTCCCTTTTCTCCATTCCTCAATCTCAACTGCCATTTTCAACTTCTCCAACCTCGCTTCTTTCTCATCCCATCCATATTTCCTACACGCTCCTCCGGGCTACCAGAAGAACCTCCAATTTCTCTCAGGTCCATTTTGATTTCTCTTCCCATCTATTCATCTTTTTTTCCTGTGTTTTTGTTCTTAATTTGCTCGATTAACTTCCAGGGAGTTGATAATTTTGTGGACGATCGGCGTAATTGGAACCGCTCCGACTTCGACTTAATTGGTGGAGAGGAGGAGGAGGAGGAGGAGGAGGACGAAGATGAGGAGGACGAAGAGGATAGAAGTTTGGATCTGTTGGTTCGTTTTGTTGAGAATATTTTTAGGAAATCATCGAGGCGAGCTCGGAAGGCTGTGAGATCGGTTCTTCCTCCATCCATCCCTACTAAACTGGTAAAGTTTATTCAGCTACGAGCTTAATCGTTGATTTTTTTTTTTCTGCCTGTTTTGTTGTTGGTTTATTGTGTATCAGTACTTGTTTTTCCAGGTGGCATTTTCTGTTAATGGGGTGCTAATGCTGGCGTTTTTGTGGGTTTTGAAAGCATTTCTTGAGGTAAATGCTTTGAAATTTAGCCATTTTTAATGCTTTCCTTTGGTATTTCCACATGGATTTGTTTCCTCAGCAATATAGGTAGTTGTAAGCTTTTCATTGCAAAGGAGAAATTTGTGTTCGAAATTTAACCTTAATTTTGGAGATGGAATTGTTATGACGCTTTGCTTGTGCATGGCAAACGTATCAACCGAAAAAAAAAAGAAAAGAGATGTCTTATGCTTCTAATTGTTGGAAGAAGCTATTCAATGGCCTCCTCTGTAGTCATACTTTCTGATAGTCAGCAAATTCAATTGGTTTAATGTTAGAGCGTTAGAGTTTTCTTTTTTCCATCTTGAAGTTCCCTCCACAAGATATTTGTAACTGTTGCTTGTTGATAAGAGTCTCTTTGCAACTCCTTTAGTATTGCTGGTTCCATGGGCTAACTCCAACTCCAATATATGTTTTGATACCGAATCCACCTCATAAACAATCTCCATTTCTTATGAACAGTTGTGATGTATTTAGTTGCTTAATTAGTTGTTAATTGCCTACTATCTACTGGACTGGATTTTAGACACTCTTTGACTTGTTGAAAAGGTGATAGGTCACCTTTGACTTGTTGTAGTATAAATAATAGCTGTTATTATTTTTATTCCAGAATATTAATAAAAAATACCCAGATTTCTTGTTTCTGTGTTAATTCTCCAATAACACACCAAGTTGTGAACCAATCTTGTCATCAGAAAACTTTTTGAAACTGGCAAGTATCTGTAAATTAACGAAATATTCAGATTGATGGCCGTCCCGTCATTTACAGGGTTCTAGTAAGAATCTTCATATGGTTAAAAGTGAACTCAGGGACTGTTTGGCCCCTAGGCGAGGCGCATTGAGGATTAGTGCACCTCTTTGAGCTTCTTTTTTGACAATTCCCTTAAAACACAAATTTGGCTGCCGTTCAATATAAAATATAATATAGTTATTTTTTTTAGCCTAATTTGAAATAAAGCATCATTGTACAATTTATACCTATGGCTAAGATTGATCTAAAGTACAAACTGAAGCAGCAGATTTCTCCTATATCTTGGTGTTGAATGACTAACATTTAACTCTTATATATCTTGGCGTTGAATGACTAATATTTAACTCTTATATATCTTTTTTTTTTGTACAAGTTTCATTTCTATCCATCTATTTTGTGGTTGTGTAAATAAACATGTATATAGTGTGTGTGTGTATATGTATATTATTTCTTATACACAGTGTACCTCACAAAAAAAAACTGCGCCTTTTTTTCCACCTTGCGCCTAGGCTTCAAAGGGCCATTGTGCCTTAGTGCATATTGGGCATTTTAAAACACTGGTTAGTTGATAAATGTGAACAATAGAGATAGAGAGAAAGATCGAGTTTCTTGATAATCATAAAAAATAGAAAACGAGGGAAAGGTGAAGCTACTCGATAAATGTGCACACTTCACTAAGTTGTTTTTAACCAAACAAATCCTAAATCCTAAACGTCAGTTAGCCTTCTTTGGTTTTTATCAGTAGTGAAAGTACCAGTCTATTGCTGTGAATCAACTTCACTACCAGTCTATTGATGTGAATCAACTGAATTTTCTCGTGCTTGTAGACAGTTGACGCTAAAATATCTGCTGGCAGGATGTGAGTAAGAAAAGTCATGTCTATATGACTGGAATTTTGAAGGAAATCCAACAATATGCATCAGAGCCACTTGCCAGTAGTAATCTTAGACATACGTTAGCTTTCTTTGGGGTTTTATTTACCAACACACACAAATACTTGTGTTTTCGGAACATGACAAAACGAAAAAACCTGTATGGTATTTGACTTTTATTTTCTGTCTTCTCAGAGCTAGTGAAAAGCGCTGGTCTGTTGATGTAGATTGGTTATTGAGTTTACTAGTGGTTGTAGACAGTTTGTCTGTTGGTGTGAATTGACTATTGAGTTTTCTGGTGTTCATAGACAGTAGGTCCCTCGGGAGACTGTTCTAAAAGGGTCTGGTATGGGAAGAATAAAGAATTTCATACAAGCTGAAACTAATTAAGACTGTAATTTCTTGAGAGAGATTTTTATTTAAAAACAAATTTGTTAATGCATTCTTGTTGAAGAAGTTCTCTTTGCCAGTTTTTTTACTATAATGGTGTCCTGTAAGTAGCTGAGGGTTTGACATGGAGTGGAATTTAAATGTTTTCTTTTCCCGTTTCTATTCTTTTCTCCTTTTTTTCGTTCATCGATAGGGGTTGGTCAAATAAGGGATATTGAATGCTTGCTTTCTTTTGGATTTTCTTCCCTCTGGTTTTTTGGGTAATCTCTTGTAGGGTGTTTATTTTATTTTTATTTTTCTACATGACATCACTCTCTTCTCTTCTATTTTCAATTTTCTCAACAATGTTATCCTTCCATTTAAAGGAAAAAAATAATTCTCCTTTTATGAAGATCATACCTAATTTCCATAGTTTTCTCCTTCGTTATTACTGTATTAGGACTATTTTCATTAACTCCCTTGGCTATATGAAATCTTAGGTGATATGCACACTTGGAACTGCAGTGTTTGTGAGCATACTCATCATTCGTGGAGTGTGGATTGGCATTTTATATCTGCAAGATACCCGCAGCCACAGACTCGGACAACTCGATGATGATCAGCACCATGCCTGGACTGGTGCTCAACCTGCATCCTGAATGCTTCAATCACTTGGCTACTTACAAACCACAAGGTAAGTGGACAACTC

mRNA sequence

GAGAAATTATGTATAAGTAATTCTAAAACTGCTTCATCCTTTCGAACAACAAACAAAATCACCTGAGCCCGTAAACTACTCTTTCTTCTTCAACAACTGACTATGTCCTTACCTGCCGTTCTTTCACCGCCGTCCCTTTTCTCCATTCCTCAATCTCAACTGCCATTTTCAACTTCTCCAACCTCGCTTCTTTCTCATCCCATCCATATTTCCTACACGCTCCTCCGGGCTACCAGAAGAACCTCCAATTTCTCTCAGGGAGTTGATAATTTTGTGGACGATCGGCGTAATTGGAACCGCTCCGACTTCGACTTAATTGGTGGAGAGGAGGAGGAGGAGGAGGAGGAGGACGAAGATGAGGAGGACGAAGAGGATAGAAGTTTGGATCTGTTGGTTCGTTTTGTTGAGAATATTTTTAGGAAATCATCGAGGCGAGCTCGGAAGGCTGTGAGATCGGTTCTTCCTCCATCCATCCCTACTAAACTGGTGATATGCACACTTGGAACTGCAGTGTTTGTGAGCATACTCATCATTCGTGGAGTGTGGATTGGCATTTTATATCTGCAAGATACCCGCAGCCACAGACTCGGACAACTCGATGATGATCAGCACCATGCCTGGACTGGTGCTCAACCTGCATCCTGAATGCTTCAATCACTTGGCTACTTACAAACCACAAGGTAAGTGGACAACTC

Coding sequence (CDS)

ATGTCCTTACCTGCCGTTCTTTCACCGCCGTCCCTTTTCTCCATTCCTCAATCTCAACTGCCATTTTCAACTTCTCCAACCTCGCTTCTTTCTCATCCCATCCATATTTCCTACACGCTCCTCCGGGCTACCAGAAGAACCTCCAATTTCTCTCAGGGAGTTGATAATTTTGTGGACGATCGGCGTAATTGGAACCGCTCCGACTTCGACTTAATTGGTGGAGAGGAGGAGGAGGAGGAGGAGGAGGACGAAGATGAGGAGGACGAAGAGGATAGAAGTTTGGATCTGTTGGTTCGTTTTGTTGAGAATATTTTTAGGAAATCATCGAGGCGAGCTCGGAAGGCTGTGAGATCGGTTCTTCCTCCATCCATCCCTACTAAACTGGTGATATGCACACTTGGAACTGCAGTGTTTGTGAGCATACTCATCATTCGTGGAGTGTGGATTGGCATTTTATATCTGCAAGATACCCGCAGCCACAGACTCGGACAACTCGATGATGATCAGCACCATGCCTGGACTGGTGCTCAACCTGCATCCTGA

Protein sequence

MSLPAVLSPPSLFSIPQSQLPFSTSPTSLLSHPIHISYTLLRATRRTSNFSQGVDNFVDDRRNWNRSDFDLIGGEEEEEEEEDEDEEDEEDRSLDLLVRFVENIFRKSSRRARKAVRSVLPPSIPTKLVICTLGTAVFVSILIIRGVWIGILYLQDTRSHRLGQLDDDQHHAWTGAQPAS*

Homology

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BLAST of CsGy7G006280 vs. ExPASy Swiss-Prot
Match: F4I3V6 (Protein SHORT HYPOCOTYL IN WHITE LIGHT 1 OS=Arabidopsis thaliana OX=3702 GN=SHW1 PE=1 SV=1)

HSP 1 Score: 49.3 bits (116), Expect = 5.4e-05
Identity = 52/176 (29.55%), Postives = 84/176 (47.73%), Query Frame = 0


Query: 2   SLPAVLSPPSLFSIPQSQLPFSTSPTSLLSHPIHISYTLLRATRRTSNFSQGVDNFVDDR 61
           +L +  S PSL  I  S    S +P S  S  +   +  L  +  +S+         DDR
Sbjct: 7   TLSSSSSSPSLTLINASHRFVSVTPFSSNSIFLRRRFRRLNRSLASSSSHSRRRYESDDR 66

Query: 62  RNWNRSDFDLIGGEEEEEEEEDEDEEDEEDRSLDLLVRFVENIFRKSSRRARKAVRSVLP 121
                 ++D++   +++   +D+DEEDE + S+DLL+RF+ ++F+K S+R +KA R +LP
Sbjct: 67  FFGGGDNYDVV--PDDDGFSDDDDEEDERESSVDLLIRFLRSMFKKVSKRTKKASRRILP 126

Query: 122 PSIPTKL----------------------VICTLGTAVFVSILIIRGVWIGILYLQ 156
            ++  +L                      VIC LG  VF  IL+IR  W    + Q
Sbjct: 127 AAMSPRLVSFAVDGILLLGSLSITRAFLEVICNLGGTVFTVILLIRLFWAAASFFQ 180

[Close]

BLAST of CsGy7G006280 vs. NCBI nr
Match: XP_004136931.2 (protein SHORT HYPOCOTYL IN WHITE LIGHT 1 [Cucumis sativus] >KGN43838.1 hypothetical protein Csa_017135 [Cucumis sativus])

HSP 1 Score: 328 bits (842), Expect = 1.45e-112
Identity = 180/202 (89.11%), Postives = 180/202 (89.11%), Query Frame = 0


Query: 1   MSLPAVLSPPSLFSIPQSQLPFSTSPTSLLSHPIHISYTLLRATRRTSNFSQGVDNFVDD 60
           MSLPAVLSPPSLFSIPQSQLPFSTSPTSLLSHPIHISYTLLRATRRTSNFSQGVDNFVDD
Sbjct: 1   MSLPAVLSPPSLFSIPQSQLPFSTSPTSLLSHPIHISYTLLRATRRTSNFSQGVDNFVDD 60

Query: 61  RRNWNRSDFDLIGGEEEEEEEEDEDEEDEEDRSLDLLVRFVENIFRKSSRRARKAVRSVL 120
           RRNWNRSDFDLIGGEEEEEEEEDEDEEDEEDRSLDLLVRFVENIFRKSSRRARKAVRSVL
Sbjct: 61  RRNWNRSDFDLIGGEEEEEEEEDEDEEDEEDRSLDLLVRFVENIFRKSSRRARKAVRSVL 120

Query: 121 PPSIPTKLV----------------------ICTLGTAVFVSILIIRGVWIGILYLQDTR 180
           PPSIPTKLV                      ICTLGTAVFVSILIIRGVWIGILYLQDTR
Sbjct: 121 PPSIPTKLVAFSVNGVLMLAFLWVLKAFLEVICTLGTAVFVSILIIRGVWIGILYLQDTR 180

[Close]

BLAST of CsGy7G006280 vs. NCBI nr
Match: XP_008455053.1 (PREDICTED: uncharacterized protein LOC103495323 [Cucumis melo])

HSP 1 Score: 301 bits (770), Expect = 1.36e-101
Identity = 166/202 (82.18%), Postives = 172/202 (85.15%), Query Frame = 0


Query: 1   MSLPAVLSPPSLFSIPQSQLPFSTSPTSLLSHPIHISYTLLRATRRTSNFSQGVDNFVDD 60
           MSLPAVLSPPSLFSIPQSQ PF TS TSLLSHP  ISYTLLRATRRTSNFSQGVDNFVD+
Sbjct: 1   MSLPAVLSPPSLFSIPQSQPPFPTSRTSLLSHPFQISYTLLRATRRTSNFSQGVDNFVDE 60

Query: 61  RRNWNRSDFDLIGGEEEEEEEEDEDEEDEEDRSLDLLVRFVENIFRKSSRRARKAVRSVL 120
           RRNWNRSDFDLIGGEEEEEEEE+ED+++EEDRSLDLLVRFVEN+FRKSSRRARKAVRSVL
Sbjct: 61  RRNWNRSDFDLIGGEEEEEEEEEEDDDEEEDRSLDLLVRFVENVFRKSSRRARKAVRSVL 120

Query: 121 PPSIPTKLV----------------------ICTLGTAVFVSILIIRGVWIGILYLQDTR 180
           P SIPTKLV                      ICTLGTAVFVSILIIRGVWIGILYLQDTR
Sbjct: 121 PQSIPTKLVAFSVNGVLMLAFLWVLKAFLEVICTLGTAVFVSILIIRGVWIGILYLQDTR 180

[Close]

BLAST of CsGy7G006280 vs. NCBI nr
Match: XP_038877542.1 (protein SHORT HYPOCOTYL IN WHITE LIGHT 1 [Benincasa hispida])

HSP 1 Score: 271 bits (692), Expect = 2.73e-89
Identity = 155/205 (75.61%), Postives = 165/205 (80.49%), Query Frame = 0


Query: 1   MSLPAVLSPPSLFSIPQSQLPFSTSPTSLLSHPIHISYTLLRATRRTSNFSQGVDNFVDD 60
           MSL A LSPPSLFSIPQSQ PF TS TSLLSHP  IS+TLLRA+RRTSNFSQGVDN VDD
Sbjct: 1   MSLSAALSPPSLFSIPQSQPPFPTSRTSLLSHPFQISHTLLRASRRTSNFSQGVDNLVDD 60

Query: 61  RRNWNRS---DFDLIGGEEEEEEEEDEDEEDEEDRSLDLLVRFVENIFRKSSRRARKAVR 120
           RRNWNRS   DFDLIGGEEEE+++ DEDE++EEDRSLDLLVRFVEN+FRK SRRARKAVR
Sbjct: 61  RRNWNRSIGSDFDLIGGEEEEDDD-DEDEDEEEDRSLDLLVRFVENVFRKVSRRARKAVR 120

Query: 121 SVLPPSIPTKLV----------------------ICTLGTAVFVSILIIRGVWIGILYLQ 180
           SVLP SIPTKLV                      ICTLGTAVF+SILIIRGVW GILYLQ
Sbjct: 121 SVLPQSIPTKLVGFSVNGVLMLAFLWVLKAFLEVICTLGTAVFLSILIIRGVWTGILYLQ 180

[Close]

BLAST of CsGy7G006280 vs. NCBI nr
Match: XP_022988955.1 (protein SHORT HYPOCOTYL IN WHITE LIGHT 1-like [Cucurbita maxima])

HSP 1 Score: 258 bits (658), Expect = 1.59e-84
Identity = 146/205 (71.22%), Postives = 163/205 (79.51%), Query Frame = 0


Query: 1   MSLPAVLSPPSLFSIPQSQLPFSTSPTSLLSHPIHISYTLLRATRRTSNFSQGVDNFVDD 60
           MSLPA LSPPSL+SIP SQ P  TS TS+LSH + IS+TLLRA+RRTSNFSQGVD+ VDD
Sbjct: 1   MSLPAALSPPSLYSIPYSQPPLPTSRTSILSHSLQISHTLLRASRRTSNFSQGVDHLVDD 60

Query: 61  RRNWNRS---DFDLIGGEEEEEEEEDEDEEDEEDRSLDLLVRFVENIFRKSSRRARKAVR 120
           RRNWNRS   DFD+IGGE++E++E++E+EE  EDRSLDLLVRFVEN+FRK S+RARKAVR
Sbjct: 61  RRNWNRSISSDFDIIGGEDDEDDEDEENEE--EDRSLDLLVRFVENVFRKVSKRARKAVR 120

Query: 121 SVLPPSIPTKLV----------------------ICTLGTAVFVSILIIRGVWIGILYLQ 180
           SVLP SIPTKLV                      ICTLGTAVFVSILIIRGVW GILYLQ
Sbjct: 121 SVLPQSIPTKLVGFSVNGVLMLAFLWILKAFLEVICTLGTAVFVSILIIRGVWTGILYLQ 180

[Close]

BLAST of CsGy7G006280 vs. NCBI nr
Match: KAG6588721.1 (Protein SHORT HYPOCOTYL IN WHITE LIGHT 1, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 257 bits (657), Expect = 2.25e-84
Identity = 146/205 (71.22%), Postives = 163/205 (79.51%), Query Frame = 0


Query: 1   MSLPAVLSPPSLFSIPQSQLPFSTSPTSLLSHPIHISYTLLRATRRTSNFSQGVDNFVDD 60
           MSLPA LSPPSL+SIP SQL   TS TS+LSH + IS+TLLRA+RRTSNFSQGVD+ VDD
Sbjct: 1   MSLPAALSPPSLYSIPHSQLRLPTSRTSILSHSLQISHTLLRASRRTSNFSQGVDHLVDD 60

Query: 61  RRNWNRS---DFDLIGGEEEEEEEEDEDEEDEEDRSLDLLVRFVENIFRKSSRRARKAVR 120
           RRNWNRS   DFD+IGGE++E++E++E+EE  EDRSLDLLVRFVEN+FRK S+RARKAVR
Sbjct: 61  RRNWNRSISSDFDIIGGEDDEDDEDEENEE--EDRSLDLLVRFVENVFRKVSKRARKAVR 120

Query: 121 SVLPPSIPTKLV----------------------ICTLGTAVFVSILIIRGVWIGILYLQ 180
           SVLP SIPTKLV                      ICTLGTAVFVSILIIRGVW GILYLQ
Sbjct: 121 SVLPQSIPTKLVGFSVNGVLMLAFLWILKAFLEVICTLGTAVFVSILIIRGVWTGILYLQ 180

[Close]

BLAST of CsGy7G006280 vs. ExPASy TrEMBL
Match: A0A0A0K2W4 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G070780 PE=4 SV=1)

HSP 1 Score: 328 bits (842), Expect = 7.04e-113
Identity = 180/202 (89.11%), Postives = 180/202 (89.11%), Query Frame = 0


Query: 1   MSLPAVLSPPSLFSIPQSQLPFSTSPTSLLSHPIHISYTLLRATRRTSNFSQGVDNFVDD 60
           MSLPAVLSPPSLFSIPQSQLPFSTSPTSLLSHPIHISYTLLRATRRTSNFSQGVDNFVDD
Sbjct: 1   MSLPAVLSPPSLFSIPQSQLPFSTSPTSLLSHPIHISYTLLRATRRTSNFSQGVDNFVDD 60

Query: 61  RRNWNRSDFDLIGGEEEEEEEEDEDEEDEEDRSLDLLVRFVENIFRKSSRRARKAVRSVL 120
           RRNWNRSDFDLIGGEEEEEEEEDEDEEDEEDRSLDLLVRFVENIFRKSSRRARKAVRSVL
Sbjct: 61  RRNWNRSDFDLIGGEEEEEEEEDEDEEDEEDRSLDLLVRFVENIFRKSSRRARKAVRSVL 120

Query: 121 PPSIPTKLV----------------------ICTLGTAVFVSILIIRGVWIGILYLQDTR 180
           PPSIPTKLV                      ICTLGTAVFVSILIIRGVWIGILYLQDTR
Sbjct: 121 PPSIPTKLVAFSVNGVLMLAFLWVLKAFLEVICTLGTAVFVSILIIRGVWIGILYLQDTR 180

[Close]

BLAST of CsGy7G006280 vs. ExPASy TrEMBL
Match: A0A1S3C0Q8 (uncharacterized protein LOC103495323 OS=Cucumis melo OX=3656 GN=LOC103495323 PE=4 SV=1)

HSP 1 Score: 301 bits (770), Expect = 6.58e-102
Identity = 166/202 (82.18%), Postives = 172/202 (85.15%), Query Frame = 0


Query: 1   MSLPAVLSPPSLFSIPQSQLPFSTSPTSLLSHPIHISYTLLRATRRTSNFSQGVDNFVDD 60
           MSLPAVLSPPSLFSIPQSQ PF TS TSLLSHP  ISYTLLRATRRTSNFSQGVDNFVD+
Sbjct: 1   MSLPAVLSPPSLFSIPQSQPPFPTSRTSLLSHPFQISYTLLRATRRTSNFSQGVDNFVDE 60

Query: 61  RRNWNRSDFDLIGGEEEEEEEEDEDEEDEEDRSLDLLVRFVENIFRKSSRRARKAVRSVL 120
           RRNWNRSDFDLIGGEEEEEEEE+ED+++EEDRSLDLLVRFVEN+FRKSSRRARKAVRSVL
Sbjct: 61  RRNWNRSDFDLIGGEEEEEEEEEEDDDEEEDRSLDLLVRFVENVFRKSSRRARKAVRSVL 120

Query: 121 PPSIPTKLV----------------------ICTLGTAVFVSILIIRGVWIGILYLQDTR 180
           P SIPTKLV                      ICTLGTAVFVSILIIRGVWIGILYLQDTR
Sbjct: 121 PQSIPTKLVAFSVNGVLMLAFLWVLKAFLEVICTLGTAVFVSILIIRGVWIGILYLQDTR 180

[Close]

BLAST of CsGy7G006280 vs. ExPASy TrEMBL
Match: A0A6J1JL13 (protein SHORT HYPOCOTYL IN WHITE LIGHT 1-like OS=Cucurbita maxima OX=3661 GN=LOC111486160 PE=4 SV=1)

HSP 1 Score: 258 bits (658), Expect = 7.68e-85
Identity = 146/205 (71.22%), Postives = 163/205 (79.51%), Query Frame = 0


Query: 1   MSLPAVLSPPSLFSIPQSQLPFSTSPTSLLSHPIHISYTLLRATRRTSNFSQGVDNFVDD 60
           MSLPA LSPPSL+SIP SQ P  TS TS+LSH + IS+TLLRA+RRTSNFSQGVD+ VDD
Sbjct: 1   MSLPAALSPPSLYSIPYSQPPLPTSRTSILSHSLQISHTLLRASRRTSNFSQGVDHLVDD 60

Query: 61  RRNWNRS---DFDLIGGEEEEEEEEDEDEEDEEDRSLDLLVRFVENIFRKSSRRARKAVR 120
           RRNWNRS   DFD+IGGE++E++E++E+EE  EDRSLDLLVRFVEN+FRK S+RARKAVR
Sbjct: 61  RRNWNRSISSDFDIIGGEDDEDDEDEENEE--EDRSLDLLVRFVENVFRKVSKRARKAVR 120

Query: 121 SVLPPSIPTKLV----------------------ICTLGTAVFVSILIIRGVWIGILYLQ 180
           SVLP SIPTKLV                      ICTLGTAVFVSILIIRGVW GILYLQ
Sbjct: 121 SVLPQSIPTKLVGFSVNGVLMLAFLWILKAFLEVICTLGTAVFVSILIIRGVWTGILYLQ 180

[Close]

BLAST of CsGy7G006280 vs. ExPASy TrEMBL
Match: A0A6J1GJK6 (protein SHORT HYPOCOTYL IN WHITE LIGHT 1-like OS=Cucurbita moschata OX=3662 GN=LOC111454943 PE=4 SV=1)

HSP 1 Score: 256 bits (654), Expect = 3.12e-84
Identity = 151/205 (73.66%), Postives = 159/205 (77.56%), Query Frame = 0


Query: 1   MSLPAVLSPPSLFSIPQSQLPFSTSPTSLLSHPIHISYTLLRATRRTSNFSQGVDNFVDD 60
           MSL A  SPPSLF++PQ Q PF TS T LLSHP  +S+ LLRA+RR SNFSQGVD+ VDD
Sbjct: 1   MSLLAARSPPSLFAVPQYQPPFPTSRTWLLSHPFQVSHALLRASRRASNFSQGVDDPVDD 60

Query: 61  RRNWNRS---DFDLIGGEEEEEEEEDEDEEDEEDRSLDLLVRFVENIFRKSSRRARKAVR 120
           RRNWN S   DFDLIGGEEEEEEEEDEDEE  EDRSLDLLV+FVEN+FRK SRRARKAVR
Sbjct: 61  RRNWNGSIGSDFDLIGGEEEEEEEEDEDEE--EDRSLDLLVQFVENVFRKVSRRARKAVR 120

Query: 121 SVLPPSIPTKLV----------------------ICTLGTAVFVSILIIRGVWIGILYLQ 180
           SVLP SIPTKLV                      ICTLGTAVFVSILIIRGVWIGILYLQ
Sbjct: 121 SVLPQSIPTKLVGFCVNGVLMLAFLWVLKAFLEVICTLGTAVFVSILIIRGVWIGILYLQ 180

[Close]

BLAST of CsGy7G006280 vs. ExPASy TrEMBL
Match: A0A6J1EIN7 (protein SHORT HYPOCOTYL IN WHITE LIGHT 1-like OS=Cucurbita moschata OX=3662 GN=LOC111434609 PE=4 SV=1)

HSP 1 Score: 256 bits (654), Expect = 3.12e-84
Identity = 145/205 (70.73%), Postives = 163/205 (79.51%), Query Frame = 0


Query: 1   MSLPAVLSPPSLFSIPQSQLPFSTSPTSLLSHPIHISYTLLRATRRTSNFSQGVDNFVDD 60
           MSLPA LSPPSL+SIP SQL   TS TS+LSH + IS+TLLRA+RRTSNFSQGVD+ VDD
Sbjct: 1   MSLPAALSPPSLYSIPHSQLRLPTSRTSILSHSLQISHTLLRASRRTSNFSQGVDHLVDD 60

Query: 61  RRNWNRS---DFDLIGGEEEEEEEEDEDEEDEEDRSLDLLVRFVENIFRKSSRRARKAVR 120
           RRNWNRS   DFD++GGE++E++E++E+EE  EDRSLDLLVRFVEN+FRK S+RARKAVR
Sbjct: 61  RRNWNRSISSDFDIMGGEDDEDDEDEENEE--EDRSLDLLVRFVENVFRKVSKRARKAVR 120

Query: 121 SVLPPSIPTKLV----------------------ICTLGTAVFVSILIIRGVWIGILYLQ 180
           SVLP SIPTKLV                      ICTLGTAVFVSILIIRGVW GILYLQ
Sbjct: 121 SVLPQSIPTKLVGFSVNGVLMLAFLWILKAFLEVICTLGTAVFVSILIIRGVWTGILYLQ 180

[Close]

BLAST of CsGy7G006280 vs. TAIR 10
Match: AT4G33780.1 (FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; BEST Arabidopsis thaliana protein match is: short hypocotyl in white light1 (TAIR:AT1G69935.1); Has 40 Blast hits to 40 proteins in 10 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 40; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). )

HSP 1 Score: 141.4 bits (355), Expect = 7.4e-34
Identity = 91/199 (45.73%), Postives = 124/199 (62.31%), Query Frame = 0


Query: 5   AVLSPPSLFSIPQSQLPFST-SPTSLLSHPIHISYTLLRATRRTSNFSQGVDNFVDDRRN 64
           ++ SP S  ++ +S L F   +P +L+     IS     A+RR+ +F  G D+F DD R+
Sbjct: 6   SISSPSSSVALLRSPLSFFIFTPKTLIFTRTRISGFPYLASRRSRDFINGRDDFADDTRS 65

Query: 65  WNRSDFDLIGGEEEEEEEEDEDEEDEEDRSLDLLVRFVENIFRKSSRRARKAVRSVLPPS 124
           WNR      G +E+ + EED+D+ +EEDRSLDLL+RFVEN+FRK S+RARKAVRS+LP S
Sbjct: 66  WNRKIKPEYGFDEDYDGEEDDDDHEEEDRSLDLLLRFVENVFRKISKRARKAVRSILPVS 125

Query: 125 IPTKL----------------------VICTLGTAVFVSILIIRGVWIGILYLQDTRSHR 181
           I TKL                      V CTLGT VF SIL+IRG+W G+ Y+Q++R++R
Sbjct: 126 ISTKLVGFSVNGVLILAFLWILKAFLEVACTLGTIVFTSILLIRGLWAGVAYMQESRNNR 185

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BLAST of CsGy7G006280 vs. TAIR 10
Match: AT1G69935.1 (short hypocotyl in white light1 )

HSP 1 Score: 49.3 bits (116), Expect = 3.8e-06
Identity = 52/176 (29.55%), Postives = 84/176 (47.73%), Query Frame = 0


Query: 2   SLPAVLSPPSLFSIPQSQLPFSTSPTSLLSHPIHISYTLLRATRRTSNFSQGVDNFVDDR 61
           +L +  S PSL  I  S    S +P S  S  +   +  L  +  +S+         DDR
Sbjct: 7   TLSSSSSSPSLTLINASHRFVSVTPFSSNSIFLRRRFRRLNRSLASSSSHSRRRYESDDR 66

Query: 62  RNWNRSDFDLIGGEEEEEEEEDEDEEDEEDRSLDLLVRFVENIFRKSSRRARKAVRSVLP 121
                 ++D++   +++   +D+DEEDE + S+DLL+RF+ ++F+K S+R +KA R +LP
Sbjct: 67  FFGGGDNYDVV--PDDDGFSDDDDEEDERESSVDLLIRFLRSMFKKVSKRTKKASRRILP 126

Query: 122 PSIPTKL----------------------VICTLGTAVFVSILIIRGVWIGILYLQ 156
            ++  +L                      VIC LG  VF  IL+IR  W    + Q
Sbjct: 127 AAMSPRLVSFAVDGILLLGSLSITRAFLEVICNLGGTVFTVILLIRLFWAAASFFQ 180

The following BLAST results are available for this feature:

BLAST of CsGy7G006280 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
F4I3V6	5.4e-05	29.55	Protein SHORT HYPOCOTYL IN WHITE LIGHT 1 OS=Arabidopsis thaliana OX=3702 GN=SHW1...	[more]

BLAST of CsGy7G006280 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_004136931.2	1.45e-112	89.11	protein SHORT HYPOCOTYL IN WHITE LIGHT 1 [Cucumis sativus] >KGN43838.1 hypotheti...	[more]
XP_008455053.1	1.36e-101	82.18	PREDICTED: uncharacterized protein LOC103495323 [Cucumis melo]	[more]
XP_038877542.1	2.73e-89	75.61	protein SHORT HYPOCOTYL IN WHITE LIGHT 1 [Benincasa hispida]	[more]
XP_022988955.1	1.59e-84	71.22	protein SHORT HYPOCOTYL IN WHITE LIGHT 1-like [Cucurbita maxima]	[more]
KAG6588721.1	2.25e-84	71.22	Protein SHORT HYPOCOTYL IN WHITE LIGHT 1, partial [Cucurbita argyrosperma subsp....	[more]

BLAST of CsGy7G006280 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0K2W4	7.04e-113	89.11	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G070780 PE=4 SV=1	[more]
A0A1S3C0Q8	6.58e-102	82.18	uncharacterized protein LOC103495323 OS=Cucumis melo OX=3656 GN=LOC103495323 PE=...	[more]
A0A6J1JL13	7.68e-85	71.22	protein SHORT HYPOCOTYL IN WHITE LIGHT 1-like OS=Cucurbita maxima OX=3661 GN=LOC...	[more]
A0A6J1GJK6	3.12e-84	73.66	protein SHORT HYPOCOTYL IN WHITE LIGHT 1-like OS=Cucurbita moschata OX=3662 GN=L...	[more]
A0A6J1EIN7	3.12e-84	70.73	protein SHORT HYPOCOTYL IN WHITE LIGHT 1-like OS=Cucurbita moschata OX=3662 GN=L...	[more]

BLAST of CsGy7G006280 vs. TAIR 10


Match Name	E-value	Identity	Description
AT4G33780.1	7.4e-34	45.73	FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknow...	[more]
AT1G69935.1	3.8e-06	29.55	short hypocotyl in white light1	[more]

InterPro

Analysis Name: InterPro Annotations of Cucumber (Gy14) v2.1
Date Performed: 2021-10-25

Position :

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x 1


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 69..91
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 72..91
None	No IPR available	PANTHER	PTHR35474:SF1	ATP PHOSPHORIBOSYLTRANSFERASE REGULATORY SUBUNIT	coord: 129..180 coord: 11..129
IPR039324	Protein SHORT HYPOCOTYL IN WHITE LIGHT 1	PANTHER	PTHR35474	ATP PHOSPHORIBOSYLTRANSFERASE REGULATORY SUBUNIT	coord: 129..180 coord: 11..129

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CsGy7G006280.2	CsGy7G006280.2	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0010100	negative regulation of photomorphogenesis
biological_process	GO:0009787	regulation of abscisic acid-activated signaling pathway
cellular_component	GO:0016021	integral component of membrane
molecular_function	GO:0016757	glycosyltransferase activity