CsGy7G002740 (gene) Cucumber (Gy14) v2.1

Overview


Name	CsGy7G002740
Type	gene
Organism	Cucumis sativus L. var. sativus cv. Gy14 (Cucumber (Gy14) v2.1)
Description	exopolygalacturonase-like
Location	Gy14Chr7: 2192219 .. 2192738 (-)
RNA-Seq Expression	CsGy7G002740
Synteny	CsGy7G002740

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGATGGGATTGAGGTCCAACATTATGACATTACTATTACATTTGTTGTTAATGTTGGCATCAACTGCAAAAGGTCAATCCATTTTTGATATCACTACATATGGTGCCAAACCTAATACTGATATTACTCAGGTAAATATATATTAACTTGATAAATTTCGTACTTTATGTATTTTTTTTTTTGTTTAATCAAATGATTCACAATTTATAGGCTTTGGCAAATGCATGGAAGGATGCATGTGCATCGACCTATTCTAGTAAATTGTTGATTCCAATGGGAGTTTACCATCTAAACCAATCCATTCTCCATGGTCCTTGCAAAAGTACTATTGAGGTTCGGATGGAAGGAACATTACAAGCTCATCCAGATCCAATAGGAGATGGGTTGGTTCTTTTTCAATATATCGATCAATTGACATTGTCAGGCACAGGTGCTTTTGATGGTCAAGGAGAAAAAGGTTGGGAAAAGAATGATTGTCACCTGAAGAAAATATGCACTAAACTTCCTATGGTAAATTAA

mRNA sequence

ATGATGGGATTGAGGTCCAACATTATGACATTACTATTACATTTGTTGTTAATGTTGGCATCAACTGCAAAAGGTCAATCCATTTTTGATATCACTACATATGGTGCCAAACCTAATACTGATATTACTCAGGCTTTGGCAAATGCATGGAAGGATGCATGTGCATCGACCTATTCTAGTAAATTGTTGATTCCAATGGGAGTTTACCATCTAAACCAATCCATTCTCCATGGTCCTTGCAAAAGTACTATTGAGGTTCGGATGGAAGGAACATTACAAGCTCATCCAGATCCAATAGGAGATGGGTTGGTTCTTTTTCAATATATCGATCAATTGACATTGTCAGGCACAGGTGCTTTTGATGGTCAAGGAGAAAAAGGTTGGGAAAAGAATGATTGTCACCTGAAGAAAATATGCACTAAACTTCCTATGGTAAATTAA

Coding sequence (CDS)

ATGATGGGATTGAGGTCCAACATTATGACATTACTATTACATTTGTTGTTAATGTTGGCATCAACTGCAAAAGGTCAATCCATTTTTGATATCACTACATATGGTGCCAAACCTAATACTGATATTACTCAGGCTTTGGCAAATGCATGGAAGGATGCATGTGCATCGACCTATTCTAGTAAATTGTTGATTCCAATGGGAGTTTACCATCTAAACCAATCCATTCTCCATGGTCCTTGCAAAAGTACTATTGAGGTTCGGATGGAAGGAACATTACAAGCTCATCCAGATCCAATAGGAGATGGGTTGGTTCTTTTTCAATATATCGATCAATTGACATTGTCAGGCACAGGTGCTTTTGATGGTCAAGGAGAAAAAGGTTGGGAAAAGAATGATTGTCACCTGAAGAAAATATGCACTAAACTTCCTATGGTAAATTAA

Protein sequence

MMGLRSNIMTLLLHLLLMLASTAKGQSIFDITTYGAKPNTDITQALANAWKDACASTYSSKLLIPMGVYHLNQSILHGPCKSTIEVRMEGTLQAHPDPIGDGLVLFQYIDQLTLSGTGAFDGQGEKGWEKNDCHLKKICTKLPMVN*

Homology

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BLAST of CsGy7G002740 vs. ExPASy Swiss-Prot
Match: Q05967 (Polygalacturonase OS=Nicotiana tabacum OX=4097 GN=PG1 PE=2 SV=1)

HSP 1 Score: 115.5 bits (288), Expect = 4.9e-25
Identity = 61/134 (45.52%), Postives = 84/134 (62.69%), Query Frame = 0


Query: 15  LLLMLASTAKGQS-IFDITTYGAKPNTDITQALANAWKDACASTYSSKLLIPMGVYHLNQ 74
           +LL LA   + Q+ +FDIT YGA  N DI++AL NA+K+AC ST  S ++IP G + +NQ
Sbjct: 12  VLLFLAHFGESQTGVFDITKYGANSNADISEALLNAFKEACQSTSPSTIVIPKGTFTMNQ 71

Query: 75  SILHGPCKSTIEVRMEGTLQAHPDP----IGDGLVLFQYIDQLTLSGTGAFDGQGEKGWE 134
             L GPCKS +E++++ TL+A  DP    +G+ L +   +DQ T+SG G  DGQ    WE
Sbjct: 72  VKLEGPCKSPLELQIQATLKAPSDPSQLKVGEWLTV-NKLDQFTMSGGGILDGQAAAAWE 131

Query: 135 KNDCHLKKICTKLP 144
              C   K C KLP
Sbjct: 132 ---CKQSKKCNKLP 141

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BLAST of CsGy7G002740 vs. ExPASy Swiss-Prot
Match: Q40312 (Polygalacturonase OS=Medicago sativa OX=3879 PE=2 SV=1)

HSP 1 Score: 112.1 bits (279), Expect = 5.5e-24
Identity = 58/126 (46.03%), Postives = 81/126 (64.29%), Query Frame = 0


Query: 10  TLLLHLLLMLASTAKGQS-IFDITTYGAKPNTDITQALANAWKDACASTYSSKLLIPMGV 69
           T ++   L +A     QS + DI+ +G KPN+DI QAL +AW +ACAST ++K++IP G 
Sbjct: 5   TAIIVSFLFIADFCAAQSGVLDISKFGGKPNSDIGQALTSAWNEACASTTAAKIVIPAGT 64

Query: 70  YHLNQSILHGPCKSTIEVRMEGTLQAHPDPI----GDGLVLFQYIDQLTLSGTGAFDGQG 129
           Y LN   L GPCK+ IE++++GT+QA  DP      +    F Y+D LTLSG G FDGQG
Sbjct: 65  YQLNGIELKGPCKAPIELQVDGTIQAPADPSVIKGTEQWFKFLYMDHLTLSGKGVFDGQG 124

Query: 130 EKGWEK 131
              ++K
Sbjct: 125 ATVYKK 130

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BLAST of CsGy7G002740 vs. ExPASy Swiss-Prot
Match: Q6H9K0 (Exopolygalacturonase (Fragment) OS=Platanus acerifolia OX=140101 GN=plaa2 PE=1 SV=1)

HSP 1 Score: 109.8 bits (273), Expect = 2.7e-23
Identity = 55/122 (45.08%), Postives = 73/122 (59.84%), Query Frame = 0


Query: 27  SIFDITTYGAKPNTDITQALANAWKDACASTYSSKLLIPMGVYHLNQSILHGPCK-STIE 86
           S+F++  YGAK   DI+QA+  AWK ACAS   S +LIP G Y++ +  + GPCK S I 
Sbjct: 8   SVFNVNDYGAKGAGDISQAVMKAWKAACASQGPSTVLIPKGNYNMGEVAMQGPCKGSKIG 67

Query: 87  VRMEGTLQAHPDPI---GDGLVLFQYIDQLTLSGTGAFDGQGEKGWEKNDCHLKKICTKL 145
            +++G ++A  DP     DG V F  ID LT+SGTG  DGQG+  W KN+C     C   
Sbjct: 68  FQIDGVVKAPADPSKFKSDGWVSFYRIDGLTVSGTGTLDGQGQTAWAKNNCDKNPNCKHA 127

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BLAST of CsGy7G002740 vs. ExPASy Swiss-Prot
Match: Q39786 (Polygalacturonase OS=Gossypium hirsutum OX=3635 GN=G9 PE=2 SV=1)

HSP 1 Score: 105.1 bits (261), Expect = 6.7e-22
Identity = 58/145 (40.00%), Postives = 87/145 (60.00%), Query Frame = 0


Query: 7   NIMTLLLHLLLMLASTAKGQS-IFDITT-YGAKPN--TDITQALANAWKDACASTYSSKL 66
           NI+  +  LLL+  S +K QS  FD+   +GAK +  TD+++   +AWK+ACAS   S +
Sbjct: 6   NIVPSMFVLLLLFISASKVQSDAFDVVAKFGAKADGKTDLSKPFLDAWKEACASVTPSTV 65

Query: 67  LIPMGVYHLNQSILHGPCKSTIEVRMEGTLQAHPDPIG---DGLVLFQYIDQLTLSGTGA 126
           +IP G Y L++  L GPCK+ IE+ ++GT+QA  DP        V F  ++   + G G 
Sbjct: 66  VIPKGTYLLSKVNLEGPCKAPIEINVQGTIQAPADPSAFKDPNWVRFYSVENFKMFGGGI 125

Query: 127 FDGQGEKGWEKNDCHLKKICTKLPM 145
           FDGQG   +EKN C  ++  +KLP+
Sbjct: 126 FDGQGSIAYEKNTCENREFRSKLPV 150

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BLAST of CsGy7G002740 vs. ExPASy Swiss-Prot
Match: W8P8Q3 (Probable galacturan 1,4-alpha-galacturonidase SALK6 OS=Kali turgidum OX=151250 PE=1 SV=3)

HSP 1 Score: 104.4 bits (259), Expect = 1.1e-21
Identity = 54/142 (38.03%), Postives = 77/142 (54.23%), Query Frame = 0


Query: 9   MTLLLHLLLMLASTAKGQSIFDITTYGAKPNTDITQALANAWKDACASTYSSKLLIPMGV 68
           + LL+ L  +  S A+ Q   DIT +GAKPN D T AL  AWK+ACA+   +K+++P G 
Sbjct: 6   LPLLVALFYLFVSVARSQGPIDITKFGAKPNADATSALLAAWKEACAAAAPAKIVVPAGE 65

Query: 69  YHLNQSILHGPCKSTIEVRMEGTLQAHPDPI----GDGLVLFQYIDQLT---LSGTGAFD 128
           + LN   L GPCK+ + + + G  +A  D       D  V  + +  LT   L   G FD
Sbjct: 66  FLLNAVKLQGPCKAPLTIEIAGNFKAPADVAQMKGEDTWVKIENVQGLTITCLPTGGTFD 125

Query: 129 GQGEKGWEKNDCHLKKICTKLP 144
           GQG+  W++N C    +C  LP
Sbjct: 126 GQGQAAWKQNKCAQSGMCNSLP 147

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BLAST of CsGy7G002740 vs. NCBI nr
Match: XP_031744868.1 (exopolygalacturonase [Cucumis sativus])

HSP 1 Score: 296 bits (757), Expect = 3.15e-97
Identity = 144/144 (100.00%), Postives = 144/144 (100.00%), Query Frame = 0


Query: 1   MMGLRSNIMTLLLHLLLMLASTAKGQSIFDITTYGAKPNTDITQALANAWKDACASTYSS 60
           MMGLRSNIMTLLLHLLLMLASTAKGQSIFDITTYGAKPNTDITQALANAWKDACASTYSS
Sbjct: 10  MMGLRSNIMTLLLHLLLMLASTAKGQSIFDITTYGAKPNTDITQALANAWKDACASTYSS 69

Query: 61  KLLIPMGVYHLNQSILHGPCKSTIEVRMEGTLQAHPDPIGDGLVLFQYIDQLTLSGTGAF 120
           KLLIPMGVYHLNQSILHGPCKSTIEVRMEGTLQAHPDPIGDGLVLFQYIDQLTLSGTGAF
Sbjct: 70  KLLIPMGVYHLNQSILHGPCKSTIEVRMEGTLQAHPDPIGDGLVLFQYIDQLTLSGTGAF 129

Query: 121 DGQGEKGWEKNDCHLKKICTKLPM 144
           DGQGEKGWEKNDCHLKKICTKLPM
Sbjct: 130 DGQGEKGWEKNDCHLKKICTKLPM 153

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BLAST of CsGy7G002740 vs. NCBI nr
Match: KAA0059139.1 (exopolygalacturonase-like [Cucumis melo var. makuwa] >TYK21608.1 exopolygalacturonase-like [Cucumis melo var. makuwa])

HSP 1 Score: 256 bits (655), Expect = 6.19e-82
Identity = 125/143 (87.41%), Postives = 132/143 (92.31%), Query Frame = 0


Query: 2   MGLRSNIMTLLLHLLLMLASTAKGQSIFDITTYGAKPNTDITQALANAWKDACASTYSSK 61
           MGLRSNIM LLLH+LLMLASTAK QSIFDITTYGAKPNTDITQ LANAWKDACAST  S+
Sbjct: 1   MGLRSNIMALLLHVLLMLASTAKCQSIFDITTYGAKPNTDITQVLANAWKDACASTNPSQ 60

Query: 62  LLIPMGVYHLNQSILHGPCKSTIEVRMEGTLQAHPDPIGDGLVLFQYIDQLTLSGTGAFD 121
           LLIP GVY LNQS+L GPC STIEVRMEGTLQAHPDPIG GLVLF++IDQLT+SGTGAFD
Sbjct: 61  LLIPTGVYQLNQSLLIGPCNSTIEVRMEGTLQAHPDPIGIGLVLFRHIDQLTISGTGAFD 120

Query: 122 GQGEKGWEKNDCHLKKICTKLPM 144
           GQGEKGWEKNDCHLKK CT+LPM
Sbjct: 121 GQGEKGWEKNDCHLKKACTRLPM 143

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BLAST of CsGy7G002740 vs. NCBI nr
Match: XP_008455507.2 (PREDICTED: exopolygalacturonase-like [Cucumis melo])

HSP 1 Score: 258 bits (658), Expect = 5.81e-81
Identity = 126/143 (88.11%), Postives = 132/143 (92.31%), Query Frame = 0


Query: 2   MGLRSNIMTLLLHLLLMLASTAKGQSIFDITTYGAKPNTDITQALANAWKDACASTYSSK 61
           MGLRSNIM LLLHLLLMLASTAK QSIFDITTYGAKPNTDITQ LANAWKDACAST  S+
Sbjct: 122 MGLRSNIMALLLHLLLMLASTAKCQSIFDITTYGAKPNTDITQVLANAWKDACASTNPSQ 181

Query: 62  LLIPMGVYHLNQSILHGPCKSTIEVRMEGTLQAHPDPIGDGLVLFQYIDQLTLSGTGAFD 121
           LLIP GVY LNQS+L GPC STIEVRMEGTLQAHPDPIG GLVLF++IDQLT+SGTGAFD
Sbjct: 182 LLIPTGVYQLNQSLLIGPCNSTIEVRMEGTLQAHPDPIGIGLVLFRHIDQLTISGTGAFD 241

Query: 122 GQGEKGWEKNDCHLKKICTKLPM 144
           GQGEKGWEKNDCHLKK CT+LPM
Sbjct: 242 GQGEKGWEKNDCHLKKACTRLPM 264

[Close]

BLAST of CsGy7G002740 vs. NCBI nr
Match: XP_011658673.1 (exopolygalacturonase [Cucumis sativus] >KAE8645719.1 hypothetical protein Csa_020328 [Cucumis sativus])

HSP 1 Score: 238 bits (608), Expect = 9.25e-75
Identity = 117/143 (81.82%), Postives = 130/143 (90.91%), Query Frame = 0


Query: 1   MMGLRSNIMTLLLHLLLMLASTAKGQSIFDITTYGAKPNTDITQALANAWKDACASTYSS 60
           MMGL+SNIM LLLHLLLMLASTAKGQSIFDITTYGAKPNTDITQALANAWKDACAST SS
Sbjct: 1   MMGLKSNIMALLLHLLLMLASTAKGQSIFDITTYGAKPNTDITQALANAWKDACASTNSS 60

Query: 61  KLLIPMGVYHLNQSILHGPCKSTIEVRMEGTLQAHPDPIGDGLVLFQYIDQLTLSGTGAF 120
            LLIP+GVY LNQSIL GPCKSTI+ R+EGTLQAHP+PIG+ +VLF++IDQLT+SGTGAF
Sbjct: 61  ILLIPIGVYQLNQSILDGPCKSTIDFRLEGTLQAHPNPIGNMMVLFEHIDQLTVSGTGAF 120

Query: 121 DGQGEKGWEKNDCHLKKICTKLP 143
           DGQ +KG +KNDC L+K C K P
Sbjct: 121 DGQRKKGGDKNDCRLEKTCAKFP 143

[Close]

BLAST of CsGy7G002740 vs. NCBI nr
Match: XP_004140444.1 (exopolygalacturonase [Cucumis sativus] >XP_031742048.1 exopolygalacturonase-like [Cucumis sativus] >KAE8648071.1 hypothetical protein Csa_018843 [Cucumis sativus])

HSP 1 Score: 216 bits (551), Expect = 2.81e-66
Identity = 104/144 (72.22%), Postives = 119/144 (82.64%), Query Frame = 0


Query: 2   MGLRSNIMTLLLHLLLMLASTAKGQSIFDITTYGAKPNTDITQALANAWKDACASTYSSK 61
           MGLR N +  L  LL +LAST KGQS+FD+T YGAKPNTDIT AL NAWK ACAST  SK
Sbjct: 1   MGLRWNFVAFL-SLLFLLASTTKGQSVFDVTRYGAKPNTDITHALLNAWKGACASTSRSK 60

Query: 62  LLIPMGVYHLNQSILHGPCKSTIEVRMEGTLQAHPDPIGDGLVLFQYIDQLTLSGTGAFD 121
           +LIP G+Y L+QS L GPCKS+IE++++GTLQA PDP GDGLV+ +YIDQLTLSGTG FD
Sbjct: 61  VLIPKGIYLLSQSNLKGPCKSSIEIQVQGTLQAPPDPKGDGLVILEYIDQLTLSGTGVFD 120

Query: 122 GQGEKGWEKNDCHLKKICTKLPMV 145
           GQG+ GWEKNDCH KKICTKLPM 
Sbjct: 121 GQGKAGWEKNDCHKKKICTKLPMT 143

[Close]

BLAST of CsGy7G002740 vs. ExPASy TrEMBL
Match: A0A5D3DDK3 (Exopolygalacturonase-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold150G00030 PE=3 SV=1)

HSP 1 Score: 256 bits (655), Expect = 3.00e-82
Identity = 125/143 (87.41%), Postives = 132/143 (92.31%), Query Frame = 0


Query: 2   MGLRSNIMTLLLHLLLMLASTAKGQSIFDITTYGAKPNTDITQALANAWKDACASTYSSK 61
           MGLRSNIM LLLH+LLMLASTAK QSIFDITTYGAKPNTDITQ LANAWKDACAST  S+
Sbjct: 1   MGLRSNIMALLLHVLLMLASTAKCQSIFDITTYGAKPNTDITQVLANAWKDACASTNPSQ 60

Query: 62  LLIPMGVYHLNQSILHGPCKSTIEVRMEGTLQAHPDPIGDGLVLFQYIDQLTLSGTGAFD 121
           LLIP GVY LNQS+L GPC STIEVRMEGTLQAHPDPIG GLVLF++IDQLT+SGTGAFD
Sbjct: 61  LLIPTGVYQLNQSLLIGPCNSTIEVRMEGTLQAHPDPIGIGLVLFRHIDQLTISGTGAFD 120

Query: 122 GQGEKGWEKNDCHLKKICTKLPM 144
           GQGEKGWEKNDCHLKK CT+LPM
Sbjct: 121 GQGEKGWEKNDCHLKKACTRLPM 143

[Close]

BLAST of CsGy7G002740 vs. ExPASy TrEMBL
Match: A0A1S3C129 (exopolygalacturonase-like OS=Cucumis melo OX=3656 GN=LOC103495658 PE=3 SV=1)

HSP 1 Score: 258 bits (658), Expect = 2.81e-81
Identity = 126/143 (88.11%), Postives = 132/143 (92.31%), Query Frame = 0


Query: 2   MGLRSNIMTLLLHLLLMLASTAKGQSIFDITTYGAKPNTDITQALANAWKDACASTYSSK 61
           MGLRSNIM LLLHLLLMLASTAK QSIFDITTYGAKPNTDITQ LANAWKDACAST  S+
Sbjct: 122 MGLRSNIMALLLHLLLMLASTAKCQSIFDITTYGAKPNTDITQVLANAWKDACASTNPSQ 181

Query: 62  LLIPMGVYHLNQSILHGPCKSTIEVRMEGTLQAHPDPIGDGLVLFQYIDQLTLSGTGAFD 121
           LLIP GVY LNQS+L GPC STIEVRMEGTLQAHPDPIG GLVLF++IDQLT+SGTGAFD
Sbjct: 182 LLIPTGVYQLNQSLLIGPCNSTIEVRMEGTLQAHPDPIGIGLVLFRHIDQLTISGTGAFD 241

Query: 122 GQGEKGWEKNDCHLKKICTKLPM 144
           GQGEKGWEKNDCHLKK CT+LPM
Sbjct: 242 GQGEKGWEKNDCHLKKACTRLPM 264

[Close]

BLAST of CsGy7G002740 vs. ExPASy TrEMBL
Match: A0A5D3CSI1 (Exopolygalacturonase-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold688G00110 PE=3 SV=1)

HSP 1 Score: 213 bits (542), Expect = 2.29e-65
Identity = 106/148 (71.62%), Postives = 120/148 (81.08%), Query Frame = 0


Query: 2   MGLRSNIMTLLLHLLLMLASTAKGQS---IFDITTYGAKPNTDITQALANAWKDACASTY 61
           MGLRSN    L  LL +LAST KGQS   +FD+T YGAKPNTDIT AL NAWK ACAST 
Sbjct: 1   MGLRSNFAPFL-SLLFLLASTTKGQSNGGVFDVTRYGAKPNTDITHALLNAWKGACASTS 60

Query: 62  SSKLLIPMGVYHLNQSILHGPCKSTIEVRMEGTLQAHPDPIGDGLVLFQYIDQLTLSGTG 121
            SK+LIP GVY L+QS L GPCKS+IE++++GTLQA PDP GDGLV+ +YID+LTLSGTG
Sbjct: 61  RSKVLIPKGVYLLSQSNLKGPCKSSIEIQVDGTLQAPPDPKGDGLVILEYIDKLTLSGTG 120

Query: 122 AFDGQGEKGWEKNDCHLKKICTKLPMVN 146
            FDGQG+ GWEKNDCH KKICTKLPM N
Sbjct: 121 VFDGQGKVGWEKNDCHKKKICTKLPMFN 147

[Close]

BLAST of CsGy7G002740 vs. ExPASy TrEMBL
Match: A0A1S3CSM1 (polygalacturonase-like OS=Cucumis melo OX=3656 GN=LOC103504474 PE=3 SV=1)

HSP 1 Score: 203 bits (517), Expect = 9.69e-65
Identity = 101/133 (75.94%), Postives = 111/133 (83.46%), Query Frame = 0


Query: 15  LLLMLASTAKGQSIFDITTYGAKPNTDITQALANAWKDACASTYSSKLLIPMGVYHLNQS 74
           LLL LAST +GQSIFD+TTYGAKPNTDITQALANAW +ACAST  S LLIP GVY L+QS
Sbjct: 11  LLLSLASTIQGQSIFDVTTYGAKPNTDITQALANAWTEACASTTPSTLLIPKGVYQLSQS 70

Query: 75  ILHGPCKST-IEVRMEGTLQAHPDPIGDGLVLFQYIDQLTLSGTGAFDGQGEKGWEKNDC 134
            L GPCKS  I+V++EGTLQA     GDGLVLF YIDQL LSG+G FDGQG+ GWEKN+C
Sbjct: 71  NLKGPCKSVPIQVQVEGTLQAPIHTKGDGLVLFSYIDQLILSGSGVFDGQGKSGWEKNNC 130

Query: 135 HLKKICTKLPMVN 146
           H KKICTKLPMVN
Sbjct: 131 HKKKICTKLPMVN 143

[Close]

BLAST of CsGy7G002740 vs. ExPASy TrEMBL
Match: A0A5A7TSR0 (Exopolygalacturonase-like OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold376G00570 PE=3 SV=1)

HSP 1 Score: 211 bits (537), Expect = 1.40e-64
Identity = 105/147 (71.43%), Postives = 119/147 (80.95%), Query Frame = 0


Query: 2   MGLRSNIMTLLLHLLLMLASTAKGQS---IFDITTYGAKPNTDITQALANAWKDACASTY 61
           MGLRSN    L  LL +LAST KGQS   +FD+T YGAKPNTDIT AL NAWK ACAST 
Sbjct: 1   MGLRSNFAPFL-SLLFLLASTTKGQSNGGVFDVTRYGAKPNTDITHALLNAWKGACASTS 60

Query: 62  SSKLLIPMGVYHLNQSILHGPCKSTIEVRMEGTLQAHPDPIGDGLVLFQYIDQLTLSGTG 121
            SK+LIP GVY L+QS L GPCKS+IE++++GTLQA PDP GDGLV+ +YID+LTLSGTG
Sbjct: 61  RSKVLIPKGVYLLSQSNLKGPCKSSIEIQVDGTLQAPPDPKGDGLVILEYIDKLTLSGTG 120

Query: 122 AFDGQGEKGWEKNDCHLKKICTKLPMV 145
            FDGQG+ GWEKNDCH KKICTKLPM 
Sbjct: 121 VFDGQGKVGWEKNDCHKKKICTKLPMT 146

[Close]

BLAST of CsGy7G002740 vs. TAIR 10
Match: AT1G78400.1 (Pectin lyase-like superfamily protein )

HSP 1 Score: 108.2 bits (269), Expect = 5.6e-24
Identity = 52/125 (41.60%), Postives = 70/125 (56.00%), Query Frame = 0


Query: 25  GQSIFDITTYGAKPN--TDITQALANAWKDACASTYSSKLLIPMGVYHLNQSILHGPCKS 84
           G+ +FD+ +YGA+ +  TD T A   AWKDAC      ++ IP G ++L      GPCKS
Sbjct: 31  GRKVFDVRSYGARGDGKTDNTMAFTKAWKDACQWKGLPRVYIPFGTFYLGAVAFTGPCKS 90

Query: 85  TIEVRMEGTLQAHPDPIG---DGLVLFQYIDQLTLSGTGAFDGQGEKGWEKNDCHLKKIC 144
            I   ++GTL A  DP     D  ++F+Y+D LT+SG G  DGQG   W  N+C     C
Sbjct: 91  RISFIIKGTLLAPKDPNAIKQDSWIIFRYVDYLTVSGGGILDGQGSYSWPLNNCRQTHNC 150

[Close]

BLAST of CsGy7G002740 vs. TAIR 10
Match: AT3G07820.1 (Pectin lyase-like superfamily protein )

HSP 1 Score: 100.5 bits (249), Expect = 1.2e-21
Identity = 55/145 (37.93%), Postives = 84/145 (57.93%), Query Frame = 0


Query: 2   MGLRSNIMTLLLHLLLMLASTAKGQSIFDITTYGAKPNTDITQALANAWKDACASTYSSK 61
           MG    + T+ +  LL +++ A      ++ T G+   +DITQAL  A+  AC S+  SK
Sbjct: 1   MGGYFGVSTIFIICLLGISANA------EVFTIGSSSGSDITQALLKAFTSACQSSSPSK 60

Query: 62  LLIPMGVYHLNQSILHGPCKSTIEVRMEGTLQAHPDPI--GDGLVLFQYIDQLTLSGTGA 121
           ++IP G + L +  + GPCK+ IEV ++GT++A  + I   +  V+F  ID   L+G GA
Sbjct: 61  VVIPKGEFKLGEIEMRGPCKAPIEVTLQGTVKADGNAIQGKEKWVVFGNIDGFKLNGGGA 120

Query: 122 FDGQGEKGWEKNDCHLKKICTKLPM 145
           FDG+G   W  N+CH    C KLP+
Sbjct: 121 FDGEGNAAWRVNNCHKTFECKKLPI 139

[Close]

BLAST of CsGy7G002740 vs. TAIR 10
Match: AT2G15450.1 (Pectin lyase-like superfamily protein )

HSP 1 Score: 99.4 bits (246), Expect = 2.6e-21
Identity = 51/144 (35.42%), Postives = 80/144 (55.56%), Query Frame = 0


Query: 7   NIMTLLLHLLLMLASTAKGQSIFDITTYGAKPN--TDITQALANAWKDACAS-TYSSKLL 66
           N +   L  +++ + +     +F++  +GAKP+  TD   A  + W  AC   + SSK+ 
Sbjct: 9   NALCFCLFFIVVASRSTVRPKVFNVQRHGAKPDGKTDNANAFTSIWSRACKRISGSSKIY 68

Query: 67  IPMGVYHLNQSILHGPCKSTIEVRMEGTLQAHPDPIG---DGLVLFQYIDQLTLSGTGAF 126
           +P G ++L      GPCK+ IE  ++GTL A  +P     D  + F+YI+ L++SG+G  
Sbjct: 69  VPKGTFYLGGVEFVGPCKNPIEFIIDGTLLAPANPSDIKQDTWINFRYINNLSISGSGTL 128

Query: 127 DGQGEKGWEKNDCHLKKICTKLPM 145
           DGQG++ W  NDCH    C KL M
Sbjct: 129 DGQGKQSWPHNDCHTNPNCPKLAM 152

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BLAST of CsGy7G002740 vs. TAIR 10
Match: AT2G15460.1 (Pectin lyase-like superfamily protein )

HSP 1 Score: 99.0 bits (245), Expect = 3.4e-21
Identity = 50/138 (36.23%), Postives = 78/138 (56.52%), Query Frame = 0


Query: 13  LHLLLMLASTAKGQSIFDITTYGAKPN--TDITQALANAWKDACAS-TYSSKLLIPMGVY 72
           L  +++ + +     +F++  +GAKP+  TD   A  + W  AC   + SSK+ +P G +
Sbjct: 15  LFFIVVASRSTVRPKVFNVQRHGAKPDGKTDNANAFTSIWSRACKRISGSSKIYVPKGTF 74

Query: 73  HLNQSILHGPCKSTIEVRMEGTLQAHPDPIG---DGLVLFQYIDQLTLSGTGAFDGQGEK 132
           +L      GPCK+ IE  ++GTL A  +P     D  + F+YI+ L++SG+G  DGQG++
Sbjct: 75  YLGGVEFVGPCKNPIEFIIDGTLLAPANPSDIKQDTWINFRYINNLSISGSGTLDGQGKQ 134

Query: 133 GWEKNDCHLKKICTKLPM 145
            W  NDCH    C KL M
Sbjct: 135 SWPHNDCHTNPNCPKLAM 152

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BLAST of CsGy7G002740 vs. TAIR 10
Match: AT1G43090.1 (Pectin lyase-like superfamily protein )

HSP 1 Score: 97.8 bits (242), Expect = 7.6e-21
Identity = 54/152 (35.53%), Postives = 83/152 (54.61%), Query Frame = 0


Query: 1   MMGLRSNIMTLLLHLLLMLASTAK--GQSIFDITTYGAKPN--TDITQALANAWKDACAS 60
           M+ + S    L L  L ++ ++       +F++  YG++P+  TD   A  + WK AC  
Sbjct: 1   MVSIASTFKALCLSFLFIVVASRPTIRPKVFNVRRYGSRPDGKTDNANAFTSVWKHACTR 60

Query: 61  -TYSSKLLIPMGVYHLNQSILHGPCKSTIEVRMEGTLQAHPDPIG---DGLVLFQYIDQL 120
            + SSK+ +P G ++L      GPCK+ IE  ++GTL A  +P     D  + F+YI+ L
Sbjct: 61  ISGSSKIYVPKGTFYLGGVEFVGPCKNPIEFVIDGTLLAPANPRDIKQDTWINFRYINNL 120

Query: 121 TLSGTGAFDGQGEKGWEKNDCHLKKICTKLPM 145
           ++SG+G  DGQG+  W  NDCH    C KL M
Sbjct: 121 SISGSGTLDGQGKYSWPLNDCHKNTNCPKLAM 152

The following BLAST results are available for this feature:

BLAST of CsGy7G002740 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q05967	4.9e-25	45.52	Polygalacturonase OS=Nicotiana tabacum OX=4097 GN=PG1 PE=2 SV=1	[more]
Q40312	5.5e-24	46.03	Polygalacturonase OS=Medicago sativa OX=3879 PE=2 SV=1	[more]
Q6H9K0	2.7e-23	45.08	Exopolygalacturonase (Fragment) OS=Platanus acerifolia OX=140101 GN=plaa2 PE=1 S...	[more]
Q39786	6.7e-22	40.00	Polygalacturonase OS=Gossypium hirsutum OX=3635 GN=G9 PE=2 SV=1	[more]
W8P8Q3	1.1e-21	38.03	Probable galacturan 1,4-alpha-galacturonidase SALK6 OS=Kali turgidum OX=151250 P...	[more]

BLAST of CsGy7G002740 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_031744868.1	3.15e-97	100.00	exopolygalacturonase [Cucumis sativus]	[more]
KAA0059139.1	6.19e-82	87.41	exopolygalacturonase-like [Cucumis melo var. makuwa] >TYK21608.1 exopolygalactur...	[more]
XP_008455507.2	5.81e-81	88.11	PREDICTED: exopolygalacturonase-like [Cucumis melo]	[more]
XP_011658673.1	9.25e-75	81.82	exopolygalacturonase [Cucumis sativus] >KAE8645719.1 hypothetical protein Csa_02...	[more]
XP_004140444.1	2.81e-66	72.22	exopolygalacturonase [Cucumis sativus] >XP_031742048.1 exopolygalacturonase-like...	[more]

BLAST of CsGy7G002740 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5D3DDK3	3.00e-82	87.41	Exopolygalacturonase-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffo...	[more]
A0A1S3C129	2.81e-81	88.11	exopolygalacturonase-like OS=Cucumis melo OX=3656 GN=LOC103495658 PE=3 SV=1	[more]
A0A5D3CSI1	2.29e-65	71.62	Exopolygalacturonase-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffo...	[more]
A0A1S3CSM1	9.69e-65	75.94	polygalacturonase-like OS=Cucumis melo OX=3656 GN=LOC103504474 PE=3 SV=1	[more]
A0A5A7TSR0	1.40e-64	71.43	Exopolygalacturonase-like OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffo...	[more]

BLAST of CsGy7G002740 vs. TAIR 10


Match Name	E-value	Identity	Description
AT1G78400.1	5.6e-24	41.60	Pectin lyase-like superfamily protein	[more]
AT3G07820.1	1.2e-21	37.93	Pectin lyase-like superfamily protein	[more]
AT2G15450.1	2.6e-21	35.42	Pectin lyase-like superfamily protein	[more]
AT2G15460.1	3.4e-21	36.23	Pectin lyase-like superfamily protein	[more]
AT1G43090.1	7.6e-21	35.53	Pectin lyase-like superfamily protein	[more]

InterPro

Analysis Name: InterPro Annotations of Cucumber (Gy14) v2.1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR000743	Glycoside hydrolase, family 28	PFAM	PF00295	Glyco_hydro_28	coord: 54..144 e-value: 7.1E-12 score: 45.0
IPR012334	Pectin lyase fold	GENE3D	2.160.20.10		coord: 17..145 e-value: 1.3E-20 score: 75.7
None	No IPR available	PANTHER	PTHR31375	FAMILY NOT NAMED	coord: 10..139
None	No IPR available	PANTHER	PTHR31375:SF248	POLYGALACTURONASE	coord: 10..139
IPR011050	Pectin lyase fold/virulence factor	SUPERFAMILY	51126	Pectin lyase-like	coord: 13..135

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CsGy7G002740.2	CsGy7G002740.2	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0005975	carbohydrate metabolic process
molecular_function	GO:0004650	polygalacturonase activity