CsGy7G002720 (gene) Cucumber (Gy14) v2.1

Overview


Name	CsGy7G002720
Type	gene
Organism	Cucumis sativus L. var. sativus cv. Gy14 (Cucumber (Gy14) v2.1)
Description	glycine-rich protein 3 short isoform-like
Location	Gy14Chr7: 2189335 .. 2190138 (-)
RNA-Seq Expression	CsGy7G002720
Synteny	CsGy7G002720

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

CACCTCCAAATTAAATTGATCATATCTCTAATCAATAGAGAGAGAATGAGTTCCAAGTCCTTCATCTTGCTCGGTCTTCTTTTTGCCGTCGTCCTCTTTTCCTCGGAGGCGATAACGGTTACAGCAAGGGATGCGAAATTGAGTGAGTTTCATTTTTTAAACCTGCAATGCGATGTATACTCGCTACTTTTAACTCCTTCAATTAGTGTTATGTACTATACCACAGCTTGGGCTTATGACAAATAATTTTTTTATTTAGTTGAGGTTTATGACAAACAAACCGCCAATGAAATTTTTAATTACAGCTTAAAATCAATGTAGGTTTTTGAATTAGTTGATGGACAATAAACATCAACAGAAACTATTTGTATTTGACGTTGATTTTTGCCGATAACAAAATTATTTTTGTTGATGTCAAAAGTTTTGTTGACACTGCTTCATTGATAATATTTTTAGTTATCAATAAAGGTCAAATTTGTGGTAGTATATAATGATTATATCAATGATTTACTTTGCAGAAGAAGCTACGATGGAAACTGGTGAAGTTGACAATGTGGAGCGCCACAGTTATGGAGGAGCTCATTCTCGGAACCTTGCGGAATGCCTCCACGGTTGCAACCGAGGTTGTTGCGAATGCTTTCGCGGCCGTTGCATCAGGTGCTGCAGCTTTGCTGGTGAGGCTGGTATTGTTGATGGAAAGCCTCAAGCTAAGCCTAACAATTAAGCACATGTTATTGTGTAACATTAAATAAAATGGCTTTATTTTCTGAAGTTGGTGTTTGTAAGTTATGAATAAATGCATAT

mRNA sequence

CACCTCCAAATTAAATTGATCATATCTCTAATCAATAGAGAGAGAATGAGTTCCAAGTCCTTCATCTTGCTCGGTCTTCTTTTTGCCGTCGTCCTCTTTTCCTCGGAGGCGATAACGGTTACAGCAAGGGATGCGAAATTGAAAGAAGCTACGATGGAAACTGGTGAAGTTGACAATGTGGAGCGCCACAGTTATGGAGGAGCTCATTCTCGGAACCTTGCGGAATGCCTCCACGGTTGCAACCGAGGTTGTTGCGAATGCTTTCGCGGCCGTTGCATCAGGTGCTGCAGCTTTGCTGGTGAGGCTGGTATTGTTGATGGAAAGCCTCAAGCTAAGCCTAACAATTAAGCACATGTTATTGTGTAACATTAAATAAAATGGCTTTATTTTCTGAAGTTGGTGTTTGTAAGTTATGAATAAATGCATAT

Coding sequence (CDS)

ATGAGTTCCAAGTCCTTCATCTTGCTCGGTCTTCTTTTTGCCGTCGTCCTCTTTTCCTCGGAGGCGATAACGGTTACAGCAAGGGATGCGAAATTGAAAGAAGCTACGATGGAAACTGGTGAAGTTGACAATGTGGAGCGCCACAGTTATGGAGGAGCTCATTCTCGGAACCTTGCGGAATGCCTCCACGGTTGCAACCGAGGTTGTTGCGAATGCTTTCGCGGCCGTTGCATCAGGTGCTGCAGCTTTGCTGGTGAGGCTGGTATTGTTGATGGAAAGCCTCAAGCTAAGCCTAACAATTAA

Protein sequence

MSSKSFILLGLLFAVVLFSSEAITVTARDAKLKEATMETGEVDNVERHSYGGAHSRNLAECLHGCNRGCCECFRGRCIRCCSFAGEAGIVDGKPQAKPNN*

Homology

[Close]

BLAST of CsGy7G002720 vs. NCBI nr
Match: XP_004144531.1 (glycine-rich protein [Cucumis sativus] >KGN43452.1 hypothetical protein Csa_020301 [Cucumis sativus])

HSP 1 Score: 205 bits (521), Expect = 1.56e-66
Identity = 100/100 (100.00%), Postives = 100/100 (100.00%), Query Frame = 0


Query: 1   MSSKSFILLGLLFAVVLFSSEAITVTARDAKLKEATMETGEVDNVERHSYGGAHSRNLAE 60
           MSSKSFILLGLLFAVVLFSSEAITVTARDAKLKEATMETGEVDNVERHSYGGAHSRNLAE
Sbjct: 1   MSSKSFILLGLLFAVVLFSSEAITVTARDAKLKEATMETGEVDNVERHSYGGAHSRNLAE 60

Query: 61  CLHGCNRGCCECFRGRCIRCCSFAGEAGIVDGKPQAKPNN 100
           CLHGCNRGCCECFRGRCIRCCSFAGEAGIVDGKPQAKPNN
Sbjct: 61  CLHGCNRGCCECFRGRCIRCCSFAGEAGIVDGKPQAKPNN 100

[Close]

BLAST of CsGy7G002720 vs. NCBI nr
Match: XP_038888333.1 (glycine-rich protein-like isoform X1 [Benincasa hispida])

HSP 1 Score: 164 bits (414), Expect = 3.17e-50
Identity = 82/101 (81.19%), Postives = 88/101 (87.13%), Query Frame = 0


Query: 1   MSSKSFILLGLLFA-VVLFSSEAITVTARDAKLKEATMETGEVDNVERHSYGGAHSRNLA 60
           MSSK+FI LGLLFA VVLFSSE +TV ARD K +EA METGEVD+VERH +GG H+RNLA
Sbjct: 1   MSSKAFIFLGLLFAIVVLFSSEEVTVMARDVKFEEAMMETGEVDDVERHGFGGGHARNLA 60

Query: 61  ECLHGCNRGCCECFRGRCIRCCSFAGEAGIVDGKPQAKPNN 100
           ECLHGCN GCCECFRGRCIRCCSFAGEA  VD KPQAKPNN
Sbjct: 61  ECLHGCNHGCCECFRGRCIRCCSFAGEA--VDVKPQAKPNN 99

[Close]

BLAST of CsGy7G002720 vs. NCBI nr
Match: XP_038888334.1 (glycine-rich protein-like isoform X2 [Benincasa hispida])

HSP 1 Score: 159 bits (401), Expect = 2.96e-48
Identity = 82/101 (81.19%), Postives = 87/101 (86.14%), Query Frame = 0


Query: 1   MSSKSFILLGLLFA-VVLFSSEAITVTARDAKLKEATMETGEVDNVERHSYGGAHSRNLA 60
           MSSK+FI LGLLFA VVLFSSE +TV ARD K  EA METGEVD+VERH +GG H+RNLA
Sbjct: 1   MSSKAFIFLGLLFAIVVLFSSEEVTVMARDVKF-EAMMETGEVDDVERHGFGGGHARNLA 60

Query: 61  ECLHGCNRGCCECFRGRCIRCCSFAGEAGIVDGKPQAKPNN 100
           ECLHGCN GCCECFRGRCIRCCSFAGEA  VD KPQAKPNN
Sbjct: 61  ECLHGCNHGCCECFRGRCIRCCSFAGEA--VDVKPQAKPNN 98

[Close]

BLAST of CsGy7G002720 vs. NCBI nr
Match: KAE8645721.1 (hypothetical protein Csa_020383 [Cucumis sativus])

HSP 1 Score: 79.3 bits (194), Expect = 5.83e-17
Identity = 39/81 (48.15%), Postives = 56/81 (69.14%), Query Frame = 0


Query: 1  MSSKSFILLGLLFAVVLFSSEAITVTARDAKLKEATMETGEVDNVERHSYGGAHSRNLAE 60
          M+SK+FILLGLLFA V+    A+T T  D K  EA  +T E+++V+ H  GG  + +LA+
Sbjct: 1  MNSKAFILLGLLFAAVILEVTAVTAT-NDIKSNEAFKQTDEINDVKHHDLGGEDA-SLAQ 60

Query: 61 CLHGCNRGCCECFRGRCIRCC 81
          C H C++GCC+C  G C++CC
Sbjct: 61 CHHHCHKGCCKCSHGHCVKCC 79

[Close]

BLAST of CsGy7G002720 vs. NCBI nr
Match: XP_022136254.1 (glycine-rich protein 3 short isoform-like [Momordica charantia])

HSP 1 Score: 68.9 bits (167), Expect = 2.18e-12
Identity = 54/130 (41.54%), Postives = 67/130 (51.54%), Query Frame = 0


Query: 1   MSSKSFILLGLLFAVVLFSSEAITVTARDAKLKEATMETGEVDNVERHSY-------GGA 60
           M+SK+FILLGLLFAVV+  S    VTARD K  E  MET  V++ +  SY       GG 
Sbjct: 1   MNSKAFILLGLLFAVVVLLSS--DVTARDLK-GETVMETDGVEDAKDRSYDRGHGHYGGG 60

Query: 61  HSRNLAECLHG-----------------------CNRGCCECFRGRCIRCCSFAGEAGIV 100
           + R  +    G                       C+ GCC  + G C RCCS+AGEA  V
Sbjct: 61  YDRGHSRYGGGYPGHGGHYGGGYPGRGRYGGGRHCHHGCCG-YHGSCGRCCSYAGEA--V 120

[Close]

BLAST of CsGy7G002720 vs. ExPASy TrEMBL
Match: A0A0A0K5A1 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G037560 PE=4 SV=1)

HSP 1 Score: 205 bits (521), Expect = 7.53e-67
Identity = 100/100 (100.00%), Postives = 100/100 (100.00%), Query Frame = 0


Query: 1   MSSKSFILLGLLFAVVLFSSEAITVTARDAKLKEATMETGEVDNVERHSYGGAHSRNLAE 60
           MSSKSFILLGLLFAVVLFSSEAITVTARDAKLKEATMETGEVDNVERHSYGGAHSRNLAE
Sbjct: 1   MSSKSFILLGLLFAVVLFSSEAITVTARDAKLKEATMETGEVDNVERHSYGGAHSRNLAE 60

Query: 61  CLHGCNRGCCECFRGRCIRCCSFAGEAGIVDGKPQAKPNN 100
           CLHGCNRGCCECFRGRCIRCCSFAGEAGIVDGKPQAKPNN
Sbjct: 61  CLHGCNRGCCECFRGRCIRCCSFAGEAGIVDGKPQAKPNN 100

[Close]

BLAST of CsGy7G002720 vs. ExPASy TrEMBL
Match: A0A6J1C3T3 (glycine-rich protein 3 short isoform-like OS=Momordica charantia OX=3673 GN=LOC111007996 PE=4 SV=1)

HSP 1 Score: 68.9 bits (167), Expect = 1.06e-12
Identity = 54/130 (41.54%), Postives = 67/130 (51.54%), Query Frame = 0


Query: 1   MSSKSFILLGLLFAVVLFSSEAITVTARDAKLKEATMETGEVDNVERHSY-------GGA 60
           M+SK+FILLGLLFAVV+  S    VTARD K  E  MET  V++ +  SY       GG 
Sbjct: 1   MNSKAFILLGLLFAVVVLLSS--DVTARDLK-GETVMETDGVEDAKDRSYDRGHGHYGGG 60

Query: 61  HSRNLAECLHG-----------------------CNRGCCECFRGRCIRCCSFAGEAGIV 100
           + R  +    G                       C+ GCC  + G C RCCS+AGEA  V
Sbjct: 61  YDRGHSRYGGGYPGHGGHYGGGYPGRGRYGGGRHCHHGCCG-YHGSCGRCCSYAGEA--V 120

[Close]

BLAST of CsGy7G002720 vs. ExPASy TrEMBL
Match: M4FI35 (Uncharacterized protein OS=Brassica rapa subsp. pekinensis OX=51351 PE=4 SV=1)

HSP 1 Score: 56.2 bits (134), Expect = 4.89e-08
Identity = 38/92 (41.30%), Postives = 49/92 (53.26%), Query Frame = 0


Query: 1  MSSKSFILLGLLFAVVLFSSEAITVTARDAKLKEATMETGEVDNVERHSYGGAHSRNLAE 60
          M+SKSF+LLGL FA++   SE  T +A    L+  T+  G  + VE   YGG H  +   
Sbjct: 1  MASKSFVLLGL-FALIFVVSEVATASA----LQSGTVNLGSEETVEPDQYGGGHGGHGGY 60

Query: 61 CLHG-----CNRGCCECFRGR-CIRCCSFAGE 86
           + G     C  GCC    G  C RCCS+AGE
Sbjct: 61 NIEGGSGGLCAHGCCSKRSGTVCYRCCSYAGE 87

[Close]

BLAST of CsGy7G002720 vs. ExPASy TrEMBL
Match: A0A078INC4 (BnaA09g54870D protein OS=Brassica napus OX=3708 GN=BnaA09g54870D PE=4 SV=1)

HSP 1 Score: 56.2 bits (134), Expect = 4.89e-08
Identity = 38/92 (41.30%), Postives = 49/92 (53.26%), Query Frame = 0


Query: 1  MSSKSFILLGLLFAVVLFSSEAITVTARDAKLKEATMETGEVDNVERHSYGGAHSRNLAE 60
          M+SKSF+LLGL FA++   SE  T +A    L+  T+  G  + VE   YGG H  +   
Sbjct: 1  MASKSFVLLGL-FALIFVVSEVATASA----LQSGTVNLGSEETVEPDQYGGGHGGHGGY 60

Query: 61 CLHG-----CNRGCCECFRGR-CIRCCSFAGE 86
           + G     C  GCC    G  C RCCS+AGE
Sbjct: 61 NIEGGSGGLCAHGCCSKRSGTVCYRCCSYAGE 87

[Close]

BLAST of CsGy7G002720 vs. ExPASy TrEMBL
Match: A0A3P6DDT2 (Uncharacterized protein OS=Brassica campestris OX=3711 GN=BRAA10T42972Z PE=4 SV=1)

HSP 1 Score: 56.2 bits (134), Expect = 4.89e-08
Identity = 38/92 (41.30%), Postives = 49/92 (53.26%), Query Frame = 0


Query: 1  MSSKSFILLGLLFAVVLFSSEAITVTARDAKLKEATMETGEVDNVERHSYGGAHSRNLAE 60
          M+SKSF+LLGL FA++   SE  T +A    L+  T+  G  + VE   YGG H  +   
Sbjct: 1  MASKSFVLLGL-FALIFVVSEVATASA----LQSGTVNLGSEETVEPDQYGGGHGGHGGY 60

Query: 61 CLHG-----CNRGCCECFRGR-CIRCCSFAGE 86
           + G     C  GCC    G  C RCCS+AGE
Sbjct: 61 NIEGGSGGLCAHGCCSKRSGTVCYRCCSYAGE 87

The following BLAST results are available for this feature:

BLAST of CsGy7G002720 vs.


Match Name	E-value	Identity	Description

BLAST of CsGy7G002720 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_004144531.1	1.56e-66	100.00	glycine-rich protein [Cucumis sativus] >KGN43452.1 hypothetical protein Csa_0203...	[more]
XP_038888333.1	3.17e-50	81.19	glycine-rich protein-like isoform X1 [Benincasa hispida]	[more]
XP_038888334.1	2.96e-48	81.19	glycine-rich protein-like isoform X2 [Benincasa hispida]	[more]
KAE8645721.1	5.83e-17	48.15	hypothetical protein Csa_020383 [Cucumis sativus]	[more]
XP_022136254.1	2.18e-12	41.54	glycine-rich protein 3 short isoform-like [Momordica charantia]	[more]

BLAST of CsGy7G002720 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0K5A1	7.53e-67	100.00	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G037560 PE=4 SV=1	[more]
A0A6J1C3T3	1.06e-12	41.54	glycine-rich protein 3 short isoform-like OS=Momordica charantia OX=3673 GN=LOC1...	[more]
M4FI35	4.89e-08	41.30	Uncharacterized protein OS=Brassica rapa subsp. pekinensis OX=51351 PE=4 SV=1	[more]
A0A078INC4	4.89e-08	41.30	BnaA09g54870D protein OS=Brassica napus OX=3708 GN=BnaA09g54870D PE=4 SV=1	[more]
A0A3P6DDT2	4.89e-08	41.30	Uncharacterized protein OS=Brassica campestris OX=3711 GN=BRAA10T42972Z PE=4 SV=...	[more]

BLAST of CsGy7G002720 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CsGy7G002720.2	CsGy7G002720.2	mRNA