CsGy7G002220 (gene) Cucumber (Gy14) v2.1

Overview


Name	CsGy7G002220
Type	gene
Organism	Cucumis sativus L. var. sativus cv. Gy14 (Cucumber (Gy14) v2.1)
Description	RING-type domain-containing protein
Location	Gy14Chr7: 1841360 .. 1852391 (+)
RNA-Seq Expression	CsGy7G002220
Synteny	CsGy7G002220

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRexonCDSpolypeptidethree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

GAACTACTGATCATCAATCTTCTTCAATCTTCTTCAATCTTTACCATCTCTACAATTCCACTCTTTTTCTCCAATTTTTTTCCCTTTTCGATCCTACTCTCTCTTCTATTTTCTCTCTTCTACAGTACTAAAAGCAATTGAAGTAAGTTTTCGTTAATCCCTTTTCCTGTTCATTTCCTTTCTCAAAGAAGTGTTCGCTTTCCTCTAATGGGTTTTGTTTAGTTTCTGAATTTGGTAAAGGAAACGACTCTTTGAGCATTTCAGTTTCATAAATTTCTCTTCTTTTTCACTGGTAGACTCAACTTACTTTGACCACCGGGGGATTATTGTTCTTTATCATGTTTGAGAATGGAGGAGGGTTTCCCATTTTCACTGAAAATTGTGTGGTTTTAATCCCTCAAGAGTGTTTTGTGGAATGTTATGAGGATTTTTTGTTCTTGGGTTTTTAGTCTCTTGAAATTTCTCTTTGTGCCTGGTGGAAGATTTTGTAATTGGATCTTTAACCATAGGGTTTGCTTTTACATAAATCTATTCTTGAATGGTAGGTGGATCATGATTCATGTGATAAATTGTCATTTCATATACTTTAATGGAACTAAATGAACTACCTTCTGTTTTTCCTCAGTTTCTGCTCCTGATCTCTATTGGTTATGGAAATTTCATTAATTAGTTGCTTAGTTCATTTTCTTTCCTGACGATGTGTTCATGAACTTCAGTTATTTATTACATGGTTCATCCAAAAAAAAAAAAAGAGAGAAAAAGCAAGAGGTTCTTAGTTGTTTGTTTACTTTTGTTTCAGCTCTGTCGTGAAGAAAGGCTTGCTTGCAAATTACAAGCTCTGAATCATTGTGTATTTCTGATCAATCTGCTAGTTTTATTCCTGCTGTACCGACTGAGTTTGTGAAGTTTTCTTTAATCACGATGGGTCTCTCCAGTCTCCCAGCTCCGTCGGAAGGAGTTCTGAACGTGATTCTTGTAAACACTGCTCTATCCATTTCCATGTTCAAATGCATTGTTCGTTTAATCCTTCACATGGTAGGAATCCGTCTCTCATGGCCATCAACTGTAGTCCCATCACCAGATTCCTTTGAAAGCTCCTCAGAGTTGGGAGATCCCAATTGTGGCTCCTCTTGGAATTACCTTGAGATGTTTCGACACCGATGTCCAAGGATTAGATTCGATAAAGTACCGAGTTCAGAACGTCGTGAACATGACTGCTCGGTCTGTTTAACTCAATTTGAACCTGAATCGGCGATAAATCACTTATCATGTGGCCATCTTTTTCACACAGATTGCTTGGAGAAGTGGCTGGACTACTGGAACATCACATGCCCTCTTTGCAGAACTCCTCTAATGTCTGAAGAAGGGAAATCTTGCTTTTGGTGAGTGTTCGGTGCTACAAATCTAGTTAGGGGAAAACTCATGTACAGCACTAGAGACCAAAGTTTGATGTATGTCCTAGAGACCAAAGTTTTGTCCCTGTAAATACATGTTTATGAAGTTCTACGCTTCTAGTTTCTGGCTTGTGCCTTTAGCTTTTAGGTTTTGAGTTAATGCACTATTATTTCACTTTCTTTGTATATGGAATTCTCTGAGTATGCTAAAAGTTCTTCAGCTTCTGTTTGTTTGATATTAAGGTTGACACTTGACAGCATGGGAATTAATTTTCTGAAATTATTGTTTTAATTGATGAGTTGGGGATTGCACAAATCTTGGTGACAACTTATATGCTATATCTTGTAAGTTTTTTTAAGTCAGAATATTGTTTATCCATGGAGCAGGATATTTACTAGAGTATTATGATCATATATCGACTGAGTTCTCACGTTAGTCTTCGGAAAAGAGAAGCTTCAAGAAGTACTTCACTTAGTCTTTCTATAGTTGTCCTTTTCCTCCCTCCTCACTACACTTGACTTGACTTATGTTGGTAAGAGTCATCTTCATAATTCTGTTCAAAACAACCCCCGCTGCTTGTATTCCTTTACTTGGCTGCTAATGGACTGTAGCTAGAACAAGGCACGGTTCAAATACCAAGTCTTTCCTATTCGACGTTTCTTGCAGTTTTCAGCCTCCTTAAACCTACTAAAATCAAAGTGAAAGCCTCCTCTACTATATGCTGTGATGCTGAAAACTGCCTTCTCTCCCTCACTTATCTTCGTGAAACTGAACATTACAGTTGCTCCATGGAAATCGAGCAGCTCCATCTATGAGATAGTCAACGTGATTCTGTAGATCATATGCTTGAATACCAAAAGGGTAGAACGAGAATGGACTCCAAAATGAAGAGAGAGAGTATAGACTAACGTTTTGAAAGAAATTAAACAGGTTGATAATAGCTTTCGAGAACTTCTCCCTCGAGCTTGAGCTACACATATCTCCCTCTTACGACCTTACCTTACTAGGATAAGTTCTCTATGTTGTACAACCATTTCCTTGAATTTTAAAAAACATATATATGCCCATCTTCCTTTGTAACTTTCTGCTACCAACCTGTCTTTATTCTTCCATGTAAAGTAATGTAATTCAAGAGTCAACAGTAAGATGTTGACACGGTCAAATGAATATCTGTTAGAGGAAGCGTTAGGGATAAATAAACTAAAGAAAGAATATTTCAATTTTGTTTTGTTGGTTCTTTTGTTAAATATCTTGCGTTTGTTGATTGTCAGGTACAGCTATCACTATCAGATTTTGGCACTCCAGCAAGTTGGACATCCAACTTGATACAACCCAGAAGTTTATAAATGAATATATCTAGAGGTTGTTTAACCTTTAGCTGGCAT

mRNA sequence

GAACTACTGATCATCAATCTTCTTCAATCTTCTTCAATCTTTACCATCTCTACAATTCCACTCTTTTTCTCCAATTTTTTTCCCTTTTCGATCCTACTCTCTCTTCTATTTTCTCTCTTCTACAGTACTAAAAGCAATTGAACTCTGTCGTGAAGAAAGGCTTGCTTGCAAATTACAAGCTCTGAATCATTGTGTATTTCTGATCAATCTGCTAGTTTTATTCCTGCTGTACCGACTGAGTTTGTGAAGTTTTCTTTAATCACGATGGGTCTCTCCAGTCTCCCAGCTCCGTCGGAAGGAGTTCTGAACGTGATTCTTGTAAACACTGCTCTATCCATTTCCATGTTCAAATGCATTGTTCGTTTAATCCTTCACATGGTAGGAATCCGTCTCTCATGGCCATCAACTGTAGTCCCATCACCAGATTCCTTTGAAAGCTCCTCAGAGTTGGGAGATCCCAATTGTGGCTCCTCTTGGAATTACCTTGAGATGTTTCGACACCGATGTCCAAGGATTAGATTCGATAAAGTACCGAGTTCAGAACGTCGTGAACATGACTGCTCGGTCTGTTTAACTCAATTTGAACCTGAATCGGCGATAAATCACTTATCATGTGGCCATCTTTTTCACACAGATTGCTTGGAGAAGTGGCTGGACTACTGGAACATCACATGCCCTCTTTGCAGAACTCCTCTAATGTCTGAAGAAGGGAAATCTTGCTTTTGGTACAGCTATCACTATCAGATTTTGGCACTCCAGCAAGTTGGACATCCAACTTGATACAACCCAGAAGTTTATAAATGAATATATCTAGAGGTTGTTTAACCTTTAGCTGGCAT

Coding sequence (CDS)

ATGGGTCTCTCCAGTCTCCCAGCTCCGTCGGAAGGAGTTCTGAACGTGATTCTTGTAAACACTGCTCTATCCATTTCCATGTTCAAATGCATTGTTCGTTTAATCCTTCACATGGTAGGAATCCGTCTCTCATGGCCATCAACTGTAGTCCCATCACCAGATTCCTTTGAAAGCTCCTCAGAGTTGGGAGATCCCAATTGTGGCTCCTCTTGGAATTACCTTGAGATGTTTCGACACCGATGTCCAAGGATTAGATTCGATAAAGTACCGAGTTCAGAACGTCGTGAACATGACTGCTCGGTCTGTTTAACTCAATTTGAACCTGAATCGGCGATAAATCACTTATCATGTGGCCATCTTTTTCACACAGATTGCTTGGAGAAGTGGCTGGACTACTGGAACATCACATGCCCTCTTTGCAGAACTCCTCTAATGTCTGAAGAAGGGAAATCTTGCTTTTGGTACAGCTATCACTATCAGATTTTGGCACTCCAGCAAGTTGGACATCCAACTTGA

Protein sequence

MGLSSLPAPSEGVLNVILVNTALSISMFKCIVRLILHMVGIRLSWPSTVVPSPDSFESSSELGDPNCGSSWNYLEMFRHRCPRIRFDKVPSSERREHDCSVCLTQFEPESAINHLSCGHLFHTDCLEKWLDYWNITCPLCRTPLMSEEGKSCFWYSYHYQILALQQVGHPT*

Homology

[Close]

BLAST of CsGy7G002220 vs. ExPASy Swiss-Prot
Match: Q9SI09 (Probable E3 ubiquitin-protein ligase XERICO OS=Arabidopsis thaliana OX=3702 GN=XERICO PE=1 SV=1)

HSP 1 Score: 157.5 bits (397), Expect = 1.3e-37
Identity = 85/150 (56.67%), Postives = 109/150 (72.67%), Query Frame = 0


Query: 1   MGLSSLPAPSEGVLNVILVNTALSISMFKCIVRLILHMVGIRL----SWPSTVVPSPDSF 60
           MGLSSLP PSEG+L VILVNTALSIS+ K IVR  L +VGI L    S PS+V  S ++ 
Sbjct: 1   MGLSSLPGPSEGMLCVILVNTALSISIVKGIVRSFLGIVGISLSPSSSSPSSVTVSSEN- 60

Query: 61  ESSSELGDPNCGSSWNYLEMFRHRCPRIRFDKVPSSERR-EHDCSVCLTQFEPESAINHL 120
            S+SE  D       +YLE FR+R P +RF+ +   +++ +++CSVCL++F+ +S IN L
Sbjct: 61  SSTSESFDFRVCQPESYLEEFRNRTPTLRFESLCRCKKQADNECSVCLSKFQGDSEINKL 120

Query: 121 SCGHLFHTDCLEKWLDYWNITCPLCRTPLM 146
            CGHLFH  CLEKW+DYWNITCPLCRTPL+
Sbjct: 121 KCGHLFHKTCLEKWIDYWNITCPLCRTPLV 149

[Close]

BLAST of CsGy7G002220 vs. ExPASy Swiss-Prot
Match: Q9XF92 (Brassinosteroid-responsive RING protein 1 OS=Arabidopsis thaliana OX=3702 GN=BRH1 PE=2 SV=1)

HSP 1 Score: 72.0 bits (175), Expect = 7.3e-12
Identity = 32/75 (42.67%), Postives = 49/75 (65.33%), Query Frame = 0


Query: 76  MFRHRCPRIRFDKVPSS-ERREHDCSVCLTQFEPESAINHL-SCGHLFHTDCLEKWLDYW 135
           + R   P I+F+++ +S E    +C+VCL +FE E  I  L +C H+FH  CL++W+D+ 
Sbjct: 70  LIREILPVIKFEELTNSGEDLPENCAVCLYEFEGEQEIRWLRNCRHIFHRSCLDRWMDHD 129

Query: 136 NITCPLCRTPLMSEE 149
             TCPLCRTP + +E
Sbjct: 130 QKTCPLCRTPFVPDE 144

[Close]

BLAST of CsGy7G002220 vs. ExPASy Swiss-Prot
Match: Q9ZT50 (E3 ubiquitin-protein ligase RHA2A OS=Arabidopsis thaliana OX=3702 GN=RHA2A PE=1 SV=1)

HSP 1 Score: 64.7 bits (156), Expect = 1.2e-09
Identity = 24/51 (47.06%), Postives = 34/51 (66.67%), Query Frame = 0


Query: 98  DCSVCLTQFEPESAINHLSCGHLFHTDCLEKWLDYWNITCPLCRTPLMSEE 149
           DC VCL++ +    +  L C H+FH  CLE WL  +N TCPLCR+ L+S++
Sbjct: 85  DCVVCLSKLKEGEEVRKLECRHVFHKKCLEGWLHQFNFTCPLCRSALVSDD 135

[Close]

BLAST of CsGy7G002220 vs. ExPASy Swiss-Prot
Match: Q9ZU51 (E3 ubiquitin-protein ligase RHA2B OS=Arabidopsis thaliana OX=3702 GN=RHA2B PE=1 SV=2)

HSP 1 Score: 63.9 bits (154), Expect = 2.0e-09
Identity = 24/54 (44.44%), Postives = 33/54 (61.11%), Query Frame = 0


Query: 92  SERREHDCSVCLTQFEPESAINHLSCGHLFHTDCLEKWLDYWNITCPLCRTPLM 146
           S+    DC VCL++ +    +  L C H+FH  CLE WL + N  CPLCR+PL+
Sbjct: 67  SDNAASDCIVCLSKLKTGEEVRKLDCRHVFHKQCLEGWLQHLNFNCPLCRSPLL 120

[Close]

BLAST of CsGy7G002220 vs. ExPASy Swiss-Prot
Match: Q9SZL4 (RING-H2 finger protein ATL18 OS=Arabidopsis thaliana OX=3702 GN=ATL18 PE=2 SV=1)

HSP 1 Score: 62.4 bits (150), Expect = 5.8e-09
Identity = 24/45 (53.33%), Postives = 32/45 (71.11%), Query Frame = 0


Query: 99  CSVCLTQFEPESAINHL-SCGHLFHTDCLEKWLDYWNITCPLCRT 143
           C +CL +FE E A+ HL  C HLFH +C+E WL   ++TCPLCR+
Sbjct: 62  CPICLVEFEAEDAVTHLPRCAHLFHINCIEPWLLRGHLTCPLCRS 106

[Close]

BLAST of CsGy7G002220 vs. NCBI nr
Match: XP_004144555.3 (probable E3 ubiquitin-protein ligase XERICO [Cucumis sativus] >KAE8645707.1 hypothetical protein Csa_020158 [Cucumis sativus])

HSP 1 Score: 332 bits (851), Expect = 7.99e-115
Identity = 154/154 (100.00%), Postives = 154/154 (100.00%), Query Frame = 0


Query: 1   MGLSSLPAPSEGVLNVILVNTALSISMFKCIVRLILHMVGIRLSWPSTVVPSPDSFESSS 60
           MGLSSLPAPSEGVLNVILVNTALSISMFKCIVRLILHMVGIRLSWPSTVVPSPDSFESSS
Sbjct: 1   MGLSSLPAPSEGVLNVILVNTALSISMFKCIVRLILHMVGIRLSWPSTVVPSPDSFESSS 60

Query: 61  ELGDPNCGSSWNYLEMFRHRCPRIRFDKVPSSERREHDCSVCLTQFEPESAINHLSCGHL 120
           ELGDPNCGSSWNYLEMFRHRCPRIRFDKVPSSERREHDCSVCLTQFEPESAINHLSCGHL
Sbjct: 61  ELGDPNCGSSWNYLEMFRHRCPRIRFDKVPSSERREHDCSVCLTQFEPESAINHLSCGHL 120

Query: 121 FHTDCLEKWLDYWNITCPLCRTPLMSEEGKSCFW 154
           FHTDCLEKWLDYWNITCPLCRTPLMSEEGKSCFW
Sbjct: 121 FHTDCLEKWLDYWNITCPLCRTPLMSEEGKSCFW 154

[Close]

BLAST of CsGy7G002220 vs. NCBI nr
Match: XP_008462033.1 (PREDICTED: probable E3 ubiquitin-protein ligase XERICO [Cucumis melo])

HSP 1 Score: 297 bits (761), Expect = 4.86e-101
Identity = 141/155 (90.97%), Postives = 147/155 (94.84%), Query Frame = 0


Query: 1   MGLSSLPAPSEGVLNVILVNTALSISMFKCIVRLILHMVGIRLSWPSTVVPSPDSFESSS 60
           MGLSSLPAPSEGVLNVILVNTALSIS+FKCIVRLILHMVGIRLSWPS+VVPS DSFESSS
Sbjct: 1   MGLSSLPAPSEGVLNVILVNTALSISLFKCIVRLILHMVGIRLSWPSSVVPSTDSFESSS 60

Query: 61  ELGDPNCGSSWNYLEMFRHRCPRIRFDKVPSSERREHDCSVCLTQFEPESAINHLSCGHL 120
           ELGDP  GSSWNYL+MFR+R PRIRFDKV SSERREHDCSVCLTQFEPES INHLSCGHL
Sbjct: 61  ELGDPIFGSSWNYLDMFRNRYPRIRFDKVQSSERREHDCSVCLTQFEPESVINHLSCGHL 120

Query: 121 FHTDCLEKWLDYWNITCPLCRTPLMSEEGKSCFWY 155
           FHT+CLEKWLDYWNITCPLCRTPLMSEE KSCF +
Sbjct: 121 FHTECLEKWLDYWNITCPLCRTPLMSEEEKSCFCF 155

[Close]

BLAST of CsGy7G002220 vs. NCBI nr
Match: XP_016902815.1 (PREDICTED: probable E3 ubiquitin-protein ligase XERICO isoform X3 [Cucumis melo])

HSP 1 Score: 295 bits (754), Expect = 4.95e-100
Identity = 140/154 (90.91%), Postives = 145/154 (94.16%), Query Frame = 0


Query: 1   MGLSSLPAPSEGVLNVILVNTALSISMFKCIVRLILHMVGIRLSWPSTVVPSPDSFESSS 60
           MGLSSLPAPSEGVLNVILVNTALSISM KCIVRLILHMVGIRLSWPS+VV S DSFE+SS
Sbjct: 1   MGLSSLPAPSEGVLNVILVNTALSISMLKCIVRLILHMVGIRLSWPSSVVSSTDSFENSS 60

Query: 61  ELGDPNCGSSWNYLEMFRHRCPRIRFDKVPSSERREHDCSVCLTQFEPESAINHLSCGHL 120
           ELGD N GSSWNYLEMFR+R PRIRFDKV SS+ REHDCSVCLTQFEPESAINHLSCGHL
Sbjct: 61  ELGDSNFGSSWNYLEMFRNRYPRIRFDKVKSSDCREHDCSVCLTQFEPESAINHLSCGHL 120

Query: 121 FHTDCLEKWLDYWNITCPLCRTPLMSEEGKSCFW 154
           FHT+CLEKWLDYWNITCPLCRTPLMSEE KSCFW
Sbjct: 121 FHTECLEKWLDYWNITCPLCRTPLMSEEEKSCFW 154

[Close]

BLAST of CsGy7G002220 vs. NCBI nr
Match: XP_008462031.1 (PREDICTED: probable E3 ubiquitin-protein ligase XERICO isoform X1 [Cucumis melo])

HSP 1 Score: 295 bits (754), Expect = 6.08e-100
Identity = 140/154 (90.91%), Postives = 145/154 (94.16%), Query Frame = 0


Query: 1   MGLSSLPAPSEGVLNVILVNTALSISMFKCIVRLILHMVGIRLSWPSTVVPSPDSFESSS 60
           MGLSSLPAPSEGVLNVILVNTALSISM KCIVRLILHMVGIRLSWPS+VV S DSFE+SS
Sbjct: 1   MGLSSLPAPSEGVLNVILVNTALSISMLKCIVRLILHMVGIRLSWPSSVVSSTDSFENSS 60

Query: 61  ELGDPNCGSSWNYLEMFRHRCPRIRFDKVPSSERREHDCSVCLTQFEPESAINHLSCGHL 120
           ELGD N GSSWNYLEMFR+R PRIRFDKV SS+ REHDCSVCLTQFEPESAINHLSCGHL
Sbjct: 61  ELGDSNFGSSWNYLEMFRNRYPRIRFDKVKSSDCREHDCSVCLTQFEPESAINHLSCGHL 120

Query: 121 FHTDCLEKWLDYWNITCPLCRTPLMSEEGKSCFW 154
           FHT+CLEKWLDYWNITCPLCRTPLMSEE KSCFW
Sbjct: 121 FHTECLEKWLDYWNITCPLCRTPLMSEEEKSCFW 154

[Close]

BLAST of CsGy7G002220 vs. NCBI nr
Match: TYK19302.1 (putative E3 ubiquitin-protein ligase XERICO [Cucumis melo var. makuwa])

HSP 1 Score: 297 bits (760), Expect = 3.79e-99
Identity = 141/153 (92.16%), Postives = 146/153 (95.42%), Query Frame = 0


Query: 1   MGLSSLPAPSEGVLNVILVNTALSISMFKCIVRLILHMVGIRLSWPSTVVPSPDSFESSS 60
           MGLSSLPAPSEGVLNVILVNTALSIS+FKCIVRLILHMVGIRLSWPS+VVPS DSFESSS
Sbjct: 1   MGLSSLPAPSEGVLNVILVNTALSISLFKCIVRLILHMVGIRLSWPSSVVPSTDSFESSS 60

Query: 61  ELGDPNCGSSWNYLEMFRHRCPRIRFDKVPSSERREHDCSVCLTQFEPESAINHLSCGHL 120
           ELGDP  GSSWNYL+MFR+R PRIRFDKV SSERREHDCSVCLTQFEPES INHLSCGHL
Sbjct: 61  ELGDPIFGSSWNYLDMFRNRYPRIRFDKVQSSERREHDCSVCLTQFEPESVINHLSCGHL 120

Query: 121 FHTDCLEKWLDYWNITCPLCRTPLMSEEGKSCF 153
           FHT+CLEKWLDYWNITCPLCRTPLMSEE KSCF
Sbjct: 121 FHTECLEKWLDYWNITCPLCRTPLMSEEEKSCF 153

[Close]

BLAST of CsGy7G002220 vs. ExPASy TrEMBL
Match: A0A0A0K534 (RING-type domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_7G031580 PE=4 SV=1)

HSP 1 Score: 308 bits (789), Expect = 1.10e-105
Identity = 146/154 (94.81%), Postives = 147/154 (95.45%), Query Frame = 0


Query: 1   MGLSSLPAPSEGVLNVILVNTALSISMFKCIVRLILHMVGIRLSWPSTVVPSPDSFESSS 60
           MGLSSLPAPSEGVLNVILVNTALSISM KC VRLILHMVGIRLSWPSTVVPSPDSFESSS
Sbjct: 1   MGLSSLPAPSEGVLNVILVNTALSISMLKCFVRLILHMVGIRLSWPSTVVPSPDSFESSS 60

Query: 61  ELGDPNCGSSWNYLEMFRHRCPRIRFDKVPSSERREHDCSVCLTQFEPESAINHLSCGHL 120
           ELGDPN GSSWNYLEMFR+R PRIRFDKV SS  REHDCSVCLTQFEPESAINHLSCGHL
Sbjct: 61  ELGDPNFGSSWNYLEMFRNRYPRIRFDKVQSSGCREHDCSVCLTQFEPESAINHLSCGHL 120

Query: 121 FHTDCLEKWLDYWNITCPLCRTPLMSEEGKSCFW 154
           FHTDCLEKWLDYWNITCPLCRTPLMSEEGKSCFW
Sbjct: 121 FHTDCLEKWLDYWNITCPLCRTPLMSEEGKSCFW 154

[Close]

BLAST of CsGy7G002220 vs. ExPASy TrEMBL
Match: A0A1S3CFW8 (probable E3 ubiquitin-protein ligase XERICO OS=Cucumis melo OX=3656 GN=LOC103500499 PE=4 SV=1)

HSP 1 Score: 297 bits (761), Expect = 2.35e-101
Identity = 141/155 (90.97%), Postives = 147/155 (94.84%), Query Frame = 0


Query: 1   MGLSSLPAPSEGVLNVILVNTALSISMFKCIVRLILHMVGIRLSWPSTVVPSPDSFESSS 60
           MGLSSLPAPSEGVLNVILVNTALSIS+FKCIVRLILHMVGIRLSWPS+VVPS DSFESSS
Sbjct: 1   MGLSSLPAPSEGVLNVILVNTALSISLFKCIVRLILHMVGIRLSWPSSVVPSTDSFESSS 60

Query: 61  ELGDPNCGSSWNYLEMFRHRCPRIRFDKVPSSERREHDCSVCLTQFEPESAINHLSCGHL 120
           ELGDP  GSSWNYL+MFR+R PRIRFDKV SSERREHDCSVCLTQFEPES INHLSCGHL
Sbjct: 61  ELGDPIFGSSWNYLDMFRNRYPRIRFDKVQSSERREHDCSVCLTQFEPESVINHLSCGHL 120

Query: 121 FHTDCLEKWLDYWNITCPLCRTPLMSEEGKSCFWY 155
           FHT+CLEKWLDYWNITCPLCRTPLMSEE KSCF +
Sbjct: 121 FHTECLEKWLDYWNITCPLCRTPLMSEEEKSCFCF 155

[Close]

BLAST of CsGy7G002220 vs. ExPASy TrEMBL
Match: A0A1S4E4A9 (probable E3 ubiquitin-protein ligase XERICO isoform X3 OS=Cucumis melo OX=3656 GN=LOC103500498 PE=4 SV=1)

HSP 1 Score: 295 bits (754), Expect = 2.40e-100
Identity = 140/154 (90.91%), Postives = 145/154 (94.16%), Query Frame = 0


Query: 1   MGLSSLPAPSEGVLNVILVNTALSISMFKCIVRLILHMVGIRLSWPSTVVPSPDSFESSS 60
           MGLSSLPAPSEGVLNVILVNTALSISM KCIVRLILHMVGIRLSWPS+VV S DSFE+SS
Sbjct: 1   MGLSSLPAPSEGVLNVILVNTALSISMLKCIVRLILHMVGIRLSWPSSVVSSTDSFENSS 60

Query: 61  ELGDPNCGSSWNYLEMFRHRCPRIRFDKVPSSERREHDCSVCLTQFEPESAINHLSCGHL 120
           ELGD N GSSWNYLEMFR+R PRIRFDKV SS+ REHDCSVCLTQFEPESAINHLSCGHL
Sbjct: 61  ELGDSNFGSSWNYLEMFRNRYPRIRFDKVKSSDCREHDCSVCLTQFEPESAINHLSCGHL 120

Query: 121 FHTDCLEKWLDYWNITCPLCRTPLMSEEGKSCFW 154
           FHT+CLEKWLDYWNITCPLCRTPLMSEE KSCFW
Sbjct: 121 FHTECLEKWLDYWNITCPLCRTPLMSEEEKSCFW 154

[Close]

BLAST of CsGy7G002220 vs. ExPASy TrEMBL
Match: A0A1S3CGH9 (probable E3 ubiquitin-protein ligase XERICO isoform X1 OS=Cucumis melo OX=3656 GN=LOC103500498 PE=4 SV=1)

HSP 1 Score: 295 bits (754), Expect = 2.94e-100
Identity = 140/154 (90.91%), Postives = 145/154 (94.16%), Query Frame = 0


Query: 1   MGLSSLPAPSEGVLNVILVNTALSISMFKCIVRLILHMVGIRLSWPSTVVPSPDSFESSS 60
           MGLSSLPAPSEGVLNVILVNTALSISM KCIVRLILHMVGIRLSWPS+VV S DSFE+SS
Sbjct: 1   MGLSSLPAPSEGVLNVILVNTALSISMLKCIVRLILHMVGIRLSWPSSVVSSTDSFENSS 60

Query: 61  ELGDPNCGSSWNYLEMFRHRCPRIRFDKVPSSERREHDCSVCLTQFEPESAINHLSCGHL 120
           ELGD N GSSWNYLEMFR+R PRIRFDKV SS+ REHDCSVCLTQFEPESAINHLSCGHL
Sbjct: 61  ELGDSNFGSSWNYLEMFRNRYPRIRFDKVKSSDCREHDCSVCLTQFEPESAINHLSCGHL 120

Query: 121 FHTDCLEKWLDYWNITCPLCRTPLMSEEGKSCFW 154
           FHT+CLEKWLDYWNITCPLCRTPLMSEE KSCFW
Sbjct: 121 FHTECLEKWLDYWNITCPLCRTPLMSEEEKSCFW 154

[Close]

BLAST of CsGy7G002220 vs. ExPASy TrEMBL
Match: A0A5D3D707 (Putative E3 ubiquitin-protein ligase XERICO OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold295G00210 PE=4 SV=1)

HSP 1 Score: 297 bits (760), Expect = 1.84e-99
Identity = 141/153 (92.16%), Postives = 146/153 (95.42%), Query Frame = 0


Query: 1   MGLSSLPAPSEGVLNVILVNTALSISMFKCIVRLILHMVGIRLSWPSTVVPSPDSFESSS 60
           MGLSSLPAPSEGVLNVILVNTALSIS+FKCIVRLILHMVGIRLSWPS+VVPS DSFESSS
Sbjct: 1   MGLSSLPAPSEGVLNVILVNTALSISLFKCIVRLILHMVGIRLSWPSSVVPSTDSFESSS 60

Query: 61  ELGDPNCGSSWNYLEMFRHRCPRIRFDKVPSSERREHDCSVCLTQFEPESAINHLSCGHL 120
           ELGDP  GSSWNYL+MFR+R PRIRFDKV SSERREHDCSVCLTQFEPES INHLSCGHL
Sbjct: 61  ELGDPIFGSSWNYLDMFRNRYPRIRFDKVQSSERREHDCSVCLTQFEPESVINHLSCGHL 120

Query: 121 FHTDCLEKWLDYWNITCPLCRTPLMSEEGKSCF 153
           FHT+CLEKWLDYWNITCPLCRTPLMSEE KSCF
Sbjct: 121 FHTECLEKWLDYWNITCPLCRTPLMSEEEKSCF 153

[Close]

BLAST of CsGy7G002220 vs. TAIR 10
Match: AT2G04240.1 (RING/U-box superfamily protein )

HSP 1 Score: 157.5 bits (397), Expect = 9.4e-39
Identity = 85/150 (56.67%), Postives = 109/150 (72.67%), Query Frame = 0


Query: 1   MGLSSLPAPSEGVLNVILVNTALSISMFKCIVRLILHMVGIRL----SWPSTVVPSPDSF 60
           MGLSSLP PSEG+L VILVNTALSIS+ K IVR  L +VGI L    S PS+V  S ++ 
Sbjct: 1   MGLSSLPGPSEGMLCVILVNTALSISIVKGIVRSFLGIVGISLSPSSSSPSSVTVSSEN- 60

Query: 61  ESSSELGDPNCGSSWNYLEMFRHRCPRIRFDKVPSSERR-EHDCSVCLTQFEPESAINHL 120
            S+SE  D       +YLE FR+R P +RF+ +   +++ +++CSVCL++F+ +S IN L
Sbjct: 61  SSTSESFDFRVCQPESYLEEFRNRTPTLRFESLCRCKKQADNECSVCLSKFQGDSEINKL 120

Query: 121 SCGHLFHTDCLEKWLDYWNITCPLCRTPLM 146
            CGHLFH  CLEKW+DYWNITCPLCRTPL+
Sbjct: 121 KCGHLFHKTCLEKWIDYWNITCPLCRTPLV 149

[Close]

BLAST of CsGy7G002220 vs. TAIR 10
Match: AT2G04240.2 (RING/U-box superfamily protein )

HSP 1 Score: 157.5 bits (397), Expect = 9.4e-39
Identity = 85/150 (56.67%), Postives = 109/150 (72.67%), Query Frame = 0


Query: 1   MGLSSLPAPSEGVLNVILVNTALSISMFKCIVRLILHMVGIRL----SWPSTVVPSPDSF 60
           MGLSSLP PSEG+L VILVNTALSIS+ K IVR  L +VGI L    S PS+V  S ++ 
Sbjct: 1   MGLSSLPGPSEGMLCVILVNTALSISIVKGIVRSFLGIVGISLSPSSSSPSSVTVSSEN- 60

Query: 61  ESSSELGDPNCGSSWNYLEMFRHRCPRIRFDKVPSSERR-EHDCSVCLTQFEPESAINHL 120
            S+SE  D       +YLE FR+R P +RF+ +   +++ +++CSVCL++F+ +S IN L
Sbjct: 61  SSTSESFDFRVCQPESYLEEFRNRTPTLRFESLCRCKKQADNECSVCLSKFQGDSEINKL 120

Query: 121 SCGHLFHTDCLEKWLDYWNITCPLCRTPLM 146
            CGHLFH  CLEKW+DYWNITCPLCRTPL+
Sbjct: 121 KCGHLFHKTCLEKWIDYWNITCPLCRTPLV 149

[Close]

BLAST of CsGy7G002220 vs. TAIR 10
Match: AT1G67856.1 (RING/U-box superfamily protein )

HSP 1 Score: 78.6 bits (192), Expect = 5.6e-15
Identity = 47/145 (32.41%), Postives = 78/145 (53.79%), Query Frame = 0


Query: 1   MGLSSLPAPSEGVLNVILVNTALSISMFKCIVRLILHMVGIRLSWPSTVVPSPDSFESSS 60
           MG+S  P  SEGV+ ++++NT +S+S+ K +VR +++MV            S ++ E+ +
Sbjct: 1   MGISHYPTASEGVMPMLVMNTVVSVSLVKNMVRSVVNMV------------SSETNEARN 60

Query: 61  ELGDPNCGSSWNYLEMFRHRCPRIRFDKVPSSERREHDCSVCLTQFEPESAINHL-SCGH 120
           +  D +   S     +       +  ++   +ER   DC VCL  F+ E  ++ L SC H
Sbjct: 61  KEDDQDHEDSKRRRRISITHFESLCENRGSRNEREAMDCCVCLCGFKEEEEVSELVSCKH 120

Query: 121 LFHTDCLEKWLDYWNITCPLCRTPL 145
            FH+ CL+KW    + TCPLCR+ L
Sbjct: 121 YFHSACLDKWFGNNHTTCPLCRSIL 133

[Close]

BLAST of CsGy7G002220 vs. TAIR 10
Match: AT3G61460.1 (brassinosteroid-responsive RING-H2 )

HSP 1 Score: 72.0 bits (175), Expect = 5.2e-13
Identity = 32/75 (42.67%), Postives = 49/75 (65.33%), Query Frame = 0


Query: 76  MFRHRCPRIRFDKVPSS-ERREHDCSVCLTQFEPESAINHL-SCGHLFHTDCLEKWLDYW 135
           + R   P I+F+++ +S E    +C+VCL +FE E  I  L +C H+FH  CL++W+D+ 
Sbjct: 70  LIREILPVIKFEELTNSGEDLPENCAVCLYEFEGEQEIRWLRNCRHIFHRSCLDRWMDHD 129

Query: 136 NITCPLCRTPLMSEE 149
             TCPLCRTP + +E
Sbjct: 130 QKTCPLCRTPFVPDE 144

[Close]

BLAST of CsGy7G002220 vs. TAIR 10
Match: AT1G15100.1 (RING-H2 finger A2A )

HSP 1 Score: 64.7 bits (156), Expect = 8.3e-11
Identity = 24/51 (47.06%), Postives = 34/51 (66.67%), Query Frame = 0


Query: 98  DCSVCLTQFEPESAINHLSCGHLFHTDCLEKWLDYWNITCPLCRTPLMSEE 149
           DC VCL++ +    +  L C H+FH  CLE WL  +N TCPLCR+ L+S++
Sbjct: 85  DCVVCLSKLKEGEEVRKLECRHVFHKKCLEGWLHQFNFTCPLCRSALVSDD 135

The following BLAST results are available for this feature:

BLAST of CsGy7G002220 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9SI09	1.3e-37	56.67	Probable E3 ubiquitin-protein ligase XERICO OS=Arabidopsis thaliana OX=3702 GN=X...	[more]
Q9XF92	7.3e-12	42.67	Brassinosteroid-responsive RING protein 1 OS=Arabidopsis thaliana OX=3702 GN=BRH...	[more]
Q9ZT50	1.2e-09	47.06	E3 ubiquitin-protein ligase RHA2A OS=Arabidopsis thaliana OX=3702 GN=RHA2A PE=1 ...	[more]
Q9ZU51	2.0e-09	44.44	E3 ubiquitin-protein ligase RHA2B OS=Arabidopsis thaliana OX=3702 GN=RHA2B PE=1 ...	[more]
Q9SZL4	5.8e-09	53.33	RING-H2 finger protein ATL18 OS=Arabidopsis thaliana OX=3702 GN=ATL18 PE=2 SV=1	[more]

BLAST of CsGy7G002220 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_004144555.3	7.99e-115	100.00	probable E3 ubiquitin-protein ligase XERICO [Cucumis sativus] >KAE8645707.1 hypo...	[more]
XP_008462033.1	4.86e-101	90.97	PREDICTED: probable E3 ubiquitin-protein ligase XERICO [Cucumis melo]	[more]
XP_016902815.1	4.95e-100	90.91	PREDICTED: probable E3 ubiquitin-protein ligase XERICO isoform X3 [Cucumis melo]	[more]
XP_008462031.1	6.08e-100	90.91	PREDICTED: probable E3 ubiquitin-protein ligase XERICO isoform X1 [Cucumis melo]	[more]
TYK19302.1	3.79e-99	92.16	putative E3 ubiquitin-protein ligase XERICO [Cucumis melo var. makuwa]	[more]

BLAST of CsGy7G002220 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0K534	1.10e-105	94.81	RING-type domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_7G031580 P...	[more]
A0A1S3CFW8	2.35e-101	90.97	probable E3 ubiquitin-protein ligase XERICO OS=Cucumis melo OX=3656 GN=LOC103500...	[more]
A0A1S4E4A9	2.40e-100	90.91	probable E3 ubiquitin-protein ligase XERICO isoform X3 OS=Cucumis melo OX=3656 G...	[more]
A0A1S3CGH9	2.94e-100	90.91	probable E3 ubiquitin-protein ligase XERICO isoform X1 OS=Cucumis melo OX=3656 G...	[more]
A0A5D3D707	1.84e-99	92.16	Putative E3 ubiquitin-protein ligase XERICO OS=Cucumis melo var. makuwa OX=11946...	[more]

BLAST of CsGy7G002220 vs. TAIR 10


Match Name	E-value	Identity	Description
AT2G04240.1	9.4e-39	56.67	RING/U-box superfamily protein	[more]
AT2G04240.2	9.4e-39	56.67	RING/U-box superfamily protein	[more]
AT1G67856.1	5.6e-15	32.41	RING/U-box superfamily protein	[more]
AT3G61460.1	5.2e-13	42.67	brassinosteroid-responsive RING-H2	[more]
AT1G15100.1	8.3e-11	47.06	RING-H2 finger A2A	[more]

InterPro

Analysis Name: InterPro Annotations of Cucumber (Gy14) v2.1
Date Performed: 2021-10-25

Position :

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x 1


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR001841	Zinc finger, RING-type	SMART	SM00184	ring_2	coord: 99..140 e-value: 1.0E-5 score: 35.0
IPR001841	Zinc finger, RING-type	PFAM	PF13639	zf-RING_2	coord: 98..141 e-value: 6.6E-11 score: 42.4
IPR001841	Zinc finger, RING-type	PROSITE	PS50089	ZF_RING_2	coord: 99..141 score: 12.961374
IPR013083	Zinc finger, RING/FYVE/PHD-type	GENE3D	3.30.40.10	Zinc/RING finger domain, C3HC4 (zinc finger)	coord: 66..146 e-value: 8.0E-17 score: 62.7
IPR044249	Probable E3 ubiquitin-protein ligase XERICO-like	PANTHER	PTHR47258	FAMILY NOT NAMED	coord: 1..154
None	No IPR available	PANTHER	PTHR47258:SF1	E3 UBIQUITIN-PROTEIN LIGASE XERICO-RELATED	coord: 1..154
None	No IPR available	SUPERFAMILY	57850	RING/U-box	coord: 93..146

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CsGy7G002220.2	CsGy7G002220.2	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
cellular_component	GO:0016021	integral component of membrane