CsGy7G001990 (gene) Cucumber (Gy14) v2.1

Overview


Name	CsGy7G001990
Type	gene
Organism	Cucumis sativus L. var. sativus cv. Gy14 (Cucumber (Gy14) v2.1)
Description	Pentatricopeptide repeat-containing protein
Location	Gy14Chr7: 1663181 .. 1665183 (-)
RNA-Seq Expression	CsGy7G001990
Synteny	CsGy7G001990

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

GGAGGGACTTTCGCCGGAGAGGGAGACAGATAACGAACGATGAGTTTCTTAGCAACTCCTTCGTCGCCGACGATTTTCAGTCCGCTACTCAAGTTTCCAAGCTCTGTCGGGACAGCATGCTGCCTGCAACTAGGTAGGGCGGAGGGATATCCGAGAGTGACAATGAGAGGCGGAAGTGAAAACCGGAAGCCACTGCAGAAGGGGAGGAACCTCAGCATCGAAGCAATTCAAGCCGTGCAATCGTTGAAGCGAACGAAGAAAGATTTACAACAGTTGGACCGAGTGTATGATTCCAAAATTAGGCGCTTATTGAAGTTTGATATGTTGGCTGTTCTTCGCGAGCTCCTCCGCCAGAACGAGTGTTCTTTGGCTCTTAAGGTGATTCCTCTGCACTCAACTCTTATGTTTATCTGCATCGTTGATTGATTAGTTATCGAAATTATTCAATATTGCATGATCGGTATCCATTTTTAGAGCTATCCACAGCAATGGTTAGATATTTATGTTTGCTGATTGTGGCTCCTTCAATACGTCTCGCTGATAGTCTGTATTACTGTACTTTCGTTTCACGAGTGTTAGGTTTTCGAAGATGTTAGAAAAGAACACTGGTACAAGCCTCAGGTCTCGCTGTATGCTGATATTATTACAGTATTGGCTAGCAATGGATTGTTCGAACGAGTACAAATTATTCTTTCGTACATGAAAGCAGAGGCTGATTTAGCACCTGAAATTGACGGGTTTAACGCTCTTTTGAAGGCATTGGTTAGTCATAATTTAGGTGAACTGGCGATGGAGTCGTATTATTTGATGAAGGATGTAGGTTGTGAACCAGATAAGGCTTCTTTCAGGATTGTCATAAAAGGATTGGAATCAAAGGGAGAGGCAGTTGATTTAAGAACTGTGAAACAGGATGCACAAAGGCTTTATGGTGAATCACTCGAGTTTTTGGAGGAAGAAGAAGAGGGAGCTACAGCCACATCTATACAATGAGCTGCAGAATCAGGAGTCAAATCATGGAATGGAAGGCATATACAGATGAAGTTCTGGCGAGAAAGATGGAGTTCATTAGCGTTTCCTTTGAAGAAACCTGAAAAGACTCAGAAACTTCCCCTAGATATGAGCTTTAACTGTACGCTGGCTTAAGTCAACCGATGCTTGCAGAGAATCTATGTGATAGCTTTTTGAGTCATGGAAAAATTAATACTAGTGATCTCATGAATGTTGGACGAATTGTCTCAGTTTACTCTCCTCATTCTTTTGCTCAGTTTCTTAAGCTGTTGGGATCCAGAAATTCCAATGCCCTGCTTGGCAGTGTCACTGATTCACTAGTCTGTGCAGAGAAAAGCTGATCATCTTGCAAGTTGCAACATACTCCAGCTCCTATATGGTGAGCATGAGACAAATAAAAGGGGAAATGCTAGACTAGAAGTCTTTAATCCAAAGTGAATGGTACATGATTTCTTTTTCCTCGAAACAAATTATATGTATAACATATGAGGAACGAACCCAGTTAGGGATTGCTACATAGCTTCTGTAAAAACATATATATTAAAGATGAAAATTATGTGGGCTCTATTCCGAGACTGCTAATTTTGTGCCTGATTCTGATGTGTGTTTTTACCCATCATGAGATTTAACATGCCAGTATACTTATGTTCAAGTTCCTAGTTATATTCTATGGGCCTAAGATTTTGATTCTGATTCCTTAGTTGCATAAAGGTTTCAAAATTGTTTCCCTTCAAATGTCTGCCCATACTGCCAGTTTCCAGGTGCAACGCTGTAGGAAGTAAGTGCTCTTCCACTGCTGGAGGTAACTTCAAAAGAGAGAGGTTGTCCGTGAAGATTGACATTGCTTTGCCAGTTCTGTCCCCAGTTCCTTGCCAATGGTATCCATCCTGTTCTTGATCCTTTTACTTTCACTGCCACTAATTCACCATCCATTCCAACATTTGTAATCAGAACTTGAAAGAATCGATAATTCCCACTAACTGTGAATCTCATTC

mRNA sequence

GGAGGGACTTTCGCCGGAGAGGGAGACAGATAACGAACGATGAGTTTCTTAGCAACTCCTTCGTCGCCGACGATTTTCAGTCCGCTACTCAAGTTTCCAAGCTCTGTCGGGACAGCATGCTGCCTGCAACTAGGTAGGGCGGAGGGATATCCGAGAGTGACAATGAGAGGCGGAAGTGAAAACCGGAAGCCACTGCAGAAGGGGAGGAACCTCAGCATCGAAGCAATTCAAGCCGTGCAATCGTTGAAGCGAACGAAGAAAGATTTACAACAGTTGGACCGAGTGTATGATTCCAAAATTAGGCGCTTATTGAAGTTTGATATGTTGGCTGTTCTTCGCGAGCTCCTCCGCCAGAACGAGTGTTCTTTGGCTCTTAAGGTTTTCGAAGATGTTAGAAAAGAACACTGGTACAAGCCTCAGGTCTCGCTGTATGCTGATATTATTACAGTATTGGCTAGCAATGGATTGTTCGAACGAGTACAAATTATTCTTTCGTACATGAAAGCAGAGGCTGATTTAGCACCTGAAATTGACGGGTTTAACGCTCTTTTGAAGGCATTGGTTAGTCATAATTTAGGTGAACTGGCGATGGAGTCGTATTATTTGATGAAGGATGTAGGTTGTGAACCAGATAAGGCTTCTTTCAGGATTGTCATAAAAGGATTGGAATCAAAGGGAGAGGCAGTTGATTTAAGAACTGTGAAACAGGATGCACAAAGGCTTTATGGTGAATCACTCGAGTTTTTGGAGGAAGAAGAAGAGGGAGCTACAGCCACATCTATACAATGAGCTGCAGAATCAGGAGTCAAATCATGGAATGGAAGGCATATACAGATGAAGTTCTGGCGAGAAAGATGGAGTTCATTAGCGTTTCCTTTGAAGAAACCTGAAAAGACTCAGAAACTTCCCCTAGATATGAGCTTTAACTGTACGCTGGCTTAAGTCAACCGATGCTTGCAGAGAATCTATGTGATAGCTTTTTGAGTCATGGAAAAATTAATACTAGTGATCTCATGAATGTTGGACGAATTGTCTCAGTTTACTCTCCTCATTCTTTTGCTCAGTTTCTTAAGCTGTTGGGATCCAGAAATTCCAATGCCCTGCTTGGCAGTGTCACTGATTCACTAGTCTGTGCAGAGAAAAGCTGATCATCTTGCAAGTTGCAACATACTCCAGCTCCTATATGTTTCCAGGTGCAACGCTGTAGGAAGTAAGTGCTCTTCCACTGCTGGAGGTAACTTCAAAAGAGAGAGGTTGTCCGTGAAGATTGACATTGCTTTGCCAGTTCTGTCCCCAGTTCCTTGCCAATGGTATCCATCCTGTTCTTGATCCTTTTACTTTCACTGCCACTAATTCACCATCCATTCCAACATTTGTAATCAGAACTTGAAAGAATCGATAATTCCCACTAACTGTGAATCTCATTC

Coding sequence (CDS)

ATGAGTTTCTTAGCAACTCCTTCGTCGCCGACGATTTTCAGTCCGCTACTCAAGTTTCCAAGCTCTGTCGGGACAGCATGCTGCCTGCAACTAGGTAGGGCGGAGGGATATCCGAGAGTGACAATGAGAGGCGGAAGTGAAAACCGGAAGCCACTGCAGAAGGGGAGGAACCTCAGCATCGAAGCAATTCAAGCCGTGCAATCGTTGAAGCGAACGAAGAAAGATTTACAACAGTTGGACCGAGTGTATGATTCCAAAATTAGGCGCTTATTGAAGTTTGATATGTTGGCTGTTCTTCGCGAGCTCCTCCGCCAGAACGAGTGTTCTTTGGCTCTTAAGGTTTTCGAAGATGTTAGAAAAGAACACTGGTACAAGCCTCAGGTCTCGCTGTATGCTGATATTATTACAGTATTGGCTAGCAATGGATTGTTCGAACGAGTACAAATTATTCTTTCGTACATGAAAGCAGAGGCTGATTTAGCACCTGAAATTGACGGGTTTAACGCTCTTTTGAAGGCATTGGTTAGTCATAATTTAGGTGAACTGGCGATGGAGTCGTATTATTTGATGAAGGATGTAGGTTGTGAACCAGATAAGGCTTCTTTCAGGATTGTCATAAAAGGATTGGAATCAAAGGGAGAGGCAGTTGATTTAAGAACTGTGAAACAGGATGCACAAAGGCTTTATGGTGAATCACTCGAGTTTTTGGAGGAAGAAGAAGAGGGAGCTACAGCCACATCTATACAATGA

Protein sequence

MSFLATPSSPTIFSPLLKFPSSVGTACCLQLGRAEGYPRVTMRGGSENRKPLQKGRNLSIEAIQAVQSLKRTKKDLQQLDRVYDSKIRRLLKFDMLAVLRELLRQNECSLALKVFEDVRKEHWYKPQVSLYADIITVLASNGLFERVQIILSYMKAEADLAPEIDGFNALLKALVSHNLGELAMESYYLMKDVGCEPDKASFRIVIKGLESKGEAVDLRTVKQDAQRLYGESLEFLEEEEEGATATSIQ*

Homology

[Close]

BLAST of CsGy7G001990 vs. ExPASy Swiss-Prot
Match: Q9STF9 (Protein THYLAKOID ASSEMBLY 8-like, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=THA8L PE=1 SV=1)

HSP 1 Score: 98.6 bits (244), Expect = 1.1e-19
Identity = 65/193 (33.68%), Postives = 105/193 (54.40%), Query Frame = 0


Query: 49  RKPLQKGRNL-SIEAIQAVQSLKRTKKDLQQLDRVYDSKIRRLLKFDMLAVLRELLRQNE 108
           R PL +G+ L   EA+  +  LKR K+D ++LD+   + + RLLK DMLAV+ EL RQ E
Sbjct: 63  RGPLWRGKKLIGKEALFVILGLKRLKEDDEKLDKFIKTHVFRLLKLDMLAVIGELERQEE 122

Query: 109 CSLALKVFEDVRKEHWYKPQVSLYADIITVLASNGLFERVQIILSYMKAEADLAPEIDGF 168
            +LA+K+FE ++K+ WY+P V +Y D+I  LA +   +    +   MK E +L P+   +
Sbjct: 123 TALAIKMFEVIQKQEWYQPDVFMYKDLIVSLAKSKRMDEAMALWEKMKKE-NLFPDSQTY 182

Query: 169 NALLKALVSHNLGELAMESYYLMKDVGCEPDKASFRIVIKGLESKGEAVDLRTVKQDAQR 228
             +++  +       AM  Y  M      P++  FR+++KGL      +    VK+D + 
Sbjct: 183 TEVIRGFLRDGCPADAMNVYEDMLKSPDPPEELPFRVLLKGL--LPHPLLRNKVKKDFEE 242

Query: 229 LYGESLEFLEEEE 241
           L+ E   +   EE
Sbjct: 243 LFPEKHAYDPPEE 252

[Close]

BLAST of CsGy7G001990 vs. ExPASy Swiss-Prot
Match: Q9LVW6 (Protein THYLAKOID ASSEMBLY 8, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=THA8 PE=2 SV=1)

HSP 1 Score: 87.4 bits (215), Expect = 2.5e-16
Identity = 65/177 (36.72%), Postives = 95/177 (53.67%), Query Frame = 0


Query: 44  GGSENRKPLQKGRNLSIEAIQAVQSLKRTKKDLQQLDRVYDSKIRRLLKFDMLAVLRELL 103
           G  +NR PL KGR LS EAIQ++QSLKR  +    L       +RRL+K D+++VLRELL
Sbjct: 34  GPRDNRGPLLKGRILSTEAIQSIQSLKRAHRTGVSLSLTL-RPLRRLIKSDLISVLRELL 93

Query: 104 RQNECSLALKVFEDVRKEHWYKP-QVSLYADIITVLASNGLFERVQIILSYMKAEADLAP 163
           RQ+ C+LA+ V   +R E  Y P  + LYADI+  L  N  F+ +  ++  +    D   
Sbjct: 94  RQDYCTLAVHVLSTLRTE--YPPLDLVLYADIVNALTRNKEFDEIDRLIGEIDG-IDQRS 153

Query: 164 EIDGFNALLKALVSHNLGELAMESYYLMKDVG-----CEPDKASFRIVIKGLESKGE 215
           +      L++A+V     E  +  Y LM++ G      E D+    ++ KGL   GE
Sbjct: 154 DDKALAKLIRAVVGAERRESVVRVYTLMRESGWGSESWEADEYVAEVLSKGLLRLGE 206

[Close]

BLAST of CsGy7G001990 vs. ExPASy Swiss-Prot
Match: Q1PFH7 (Pentatricopeptide repeat-containing protein At1g62350 OS=Arabidopsis thaliana OX=3702 GN=At1g62350 PE=2 SV=1)

HSP 1 Score: 86.3 bits (212), Expect = 5.5e-16
Identity = 51/152 (33.55%), Postives = 84/152 (55.26%), Query Frame = 0


Query: 58  LSIEAIQAVQSLKRTKKDLQQLDRVYDSKIRRLLKFDMLAVLRELLRQNECSLALKVFED 117
           +S E + A + LKR +    +LDR   S + RLLK D+++VL E  RQN+  L +K++E 
Sbjct: 1   MSKEGLIAAKELKRLQTQSVRLDRFIGSHVSRLLKSDLVSVLAEFQRQNQVFLCMKLYEV 60

Query: 118 VRKEHWYKPQVSLYADIITVLASNGLFERVQIILSYMKAEADLAPEIDGFNALLKALVSH 177
           VR+E WY+P +  Y D++ +LA N   +  + +   +K E  L  +   F  L++  + +
Sbjct: 61  VRREIWYRPDMFFYRDMLMMLARNKKVDETKKVWEDLKKEEVLFDQ-HTFGDLVRGFLDN 120

Query: 178 NLGELAMESYYLMKDVGCEPDKASFRIVIKGL 210
            L   AM  Y  M++    P    FR+++KGL
Sbjct: 121 ELPLEAMRLYGEMRESPDRPLSLPFRVILKGL 151

[Close]

BLAST of CsGy7G001990 vs. ExPASy Swiss-Prot
Match: Q9SCP4 (Pentatricopeptide repeat-containing protein At3g53170 OS=Arabidopsis thaliana OX=3702 GN=At3g53170 PE=3 SV=1)

HSP 1 Score: 60.1 bits (144), Expect = 4.2e-08
Identity = 40/149 (26.85%), Postives = 75/149 (50.34%), Query Frame = 0


Query: 60  IEAIQAVQSLKRTKKDLQQLDRVYDS-KIRRLLKFDMLAVLRELLRQNECSLALKVFEDV 119
           ++  + +  + RT   ++ ++R  +S K   L    +L  L E +++N    ALK+F  +
Sbjct: 25  VDPKKELSRILRTDAAVKGIERKANSEKYLTLWPKAVLEALDEAIKENRWQSALKIFNLL 84

Query: 120 RKEHWYKPQVSLYADIITVLASNGLFERVQIILSYMKAEADLAPEIDGFNALLKALVSHN 179
           RK+HWY+P+   Y  +  VL +    ++  ++   M +E  L P ID + +L+       
Sbjct: 85  RKQHWYEPRCKTYTKLFKVLGNCKQPDQASLLFEVMLSEG-LKPTIDVYTSLISVYGKSE 144

Query: 180 LGELAMESYYLMKDVG-CEPDKASFRIVI 207
           L + A  +   MK V  C+PD  +F ++I
Sbjct: 145 LLDKAFSTLEYMKSVSDCKPDVFTFTVLI 172

[Close]

BLAST of CsGy7G001990 vs. ExPASy Swiss-Prot
Match: O82178 (Pentatricopeptide repeat-containing protein At2g35130 OS=Arabidopsis thaliana OX=3702 GN=At2g35130 PE=3 SV=1)

HSP 1 Score: 59.3 bits (142), Expect = 7.1e-08
Identity = 32/109 (29.36%), Postives = 56/109 (51.38%), Query Frame = 0


Query: 120 KEHWYKPQVSLYADIITVLASNGLFERVQIILSYMKAEADLAPEIDGFNALLKALVSHNL 179
           + H  KP +  Y  ++   A  GL E+ + I   ++ E  L P++  +NAL+++      
Sbjct: 291 RSHQCKPNICTYTALVNAFAREGLCEKAEEIFEQLQ-EDGLEPDVYVYNALMESYSRAGY 350

Query: 180 GELAMESYYLMKDVGCEPDKASFRIVIKGLESKGEAVDLRTVKQDAQRL 229
              A E + LM+ +GCEPD+AS+ I++      G   D   V ++ +RL
Sbjct: 351 PYGAAEIFSLMQHMGCEPDRASYNIMVDAYGRAGLHSDAEAVFEEMKRL 398

[Close]

BLAST of CsGy7G001990 vs. NCBI nr
Match: XP_031744771.1 (protein THYLAKOID ASSEMBLY 8-like, chloroplastic [Cucumis sativus] >KGN43371.1 hypothetical protein Csa_020464 [Cucumis sativus])

HSP 1 Score: 477 bits (1228), Expect = 1.86e-169
Identity = 249/249 (100.00%), Postives = 249/249 (100.00%), Query Frame = 0


Query: 1   MSFLATPSSPTIFSPLLKFPSSVGTACCLQLGRAEGYPRVTMRGGSENRKPLQKGRNLSI 60
           MSFLATPSSPTIFSPLLKFPSSVGTACCLQLGRAEGYPRVTMRGGSENRKPLQKGRNLSI
Sbjct: 1   MSFLATPSSPTIFSPLLKFPSSVGTACCLQLGRAEGYPRVTMRGGSENRKPLQKGRNLSI 60

Query: 61  EAIQAVQSLKRTKKDLQQLDRVYDSKIRRLLKFDMLAVLRELLRQNECSLALKVFEDVRK 120
           EAIQAVQSLKRTKKDLQQLDRVYDSKIRRLLKFDMLAVLRELLRQNECSLALKVFEDVRK
Sbjct: 61  EAIQAVQSLKRTKKDLQQLDRVYDSKIRRLLKFDMLAVLRELLRQNECSLALKVFEDVRK 120

Query: 121 EHWYKPQVSLYADIITVLASNGLFERVQIILSYMKAEADLAPEIDGFNALLKALVSHNLG 180
           EHWYKPQVSLYADIITVLASNGLFERVQIILSYMKAEADLAPEIDGFNALLKALVSHNLG
Sbjct: 121 EHWYKPQVSLYADIITVLASNGLFERVQIILSYMKAEADLAPEIDGFNALLKALVSHNLG 180

Query: 181 ELAMESYYLMKDVGCEPDKASFRIVIKGLESKGEAVDLRTVKQDAQRLYGESLEFLEEEE 240
           ELAMESYYLMKDVGCEPDKASFRIVIKGLESKGEAVDLRTVKQDAQRLYGESLEFLEEEE
Sbjct: 181 ELAMESYYLMKDVGCEPDKASFRIVIKGLESKGEAVDLRTVKQDAQRLYGESLEFLEEEE 240

Query: 241 EGATATSIQ 249
           EGATATSIQ
Sbjct: 241 EGATATSIQ 249

[Close]

BLAST of CsGy7G001990 vs. NCBI nr
Match: XP_008451190.1 (PREDICTED: pentatricopeptide repeat-containing protein At3g46870-like [Cucumis melo] >KAA0059596.1 pentatricopeptide repeat-containing protein [Cucumis melo var. makuwa])

HSP 1 Score: 435 bits (1118), Expect = 1.09e-152
Identity = 229/248 (92.34%), Postives = 233/248 (93.95%), Query Frame = 0


Query: 1   MSFLATPSSPTIFSPLLKFPSSVGTACCLQLGRAEGYPRVTMRGGSENRKPLQKGRNLSI 60
           MSFL T  SPTI SP LK PSSV   CCLQLGRAEGYPRVTMRGGSENRKPLQKGRNLSI
Sbjct: 1   MSFLLTLPSPTILSPPLKLPSSVRKPCCLQLGRAEGYPRVTMRGGSENRKPLQKGRNLSI 60

Query: 61  EAIQAVQSLKRTKKDLQQLDRVYDSKIRRLLKFDMLAVLRELLRQNECSLALKVFEDVRK 120
           EAIQAVQSLKRTKKDLQQLDRVYDSKIRRLLKFDMLAVLRELLRQNECSLALKVFEDVR 
Sbjct: 61  EAIQAVQSLKRTKKDLQQLDRVYDSKIRRLLKFDMLAVLRELLRQNECSLALKVFEDVRN 120

Query: 121 EHWYKPQVSLYADIITVLASNGLFERVQIILSYMKAEADLAPEIDGFNALLKALVSHNLG 180
           EHWYKPQVSLYADIITVLASNGLFERVQIILSYMKAE DLAPEIDGFNALLKALV HNLG
Sbjct: 121 EHWYKPQVSLYADIITVLASNGLFERVQIILSYMKAETDLAPEIDGFNALLKALVGHNLG 180

Query: 181 ELAMESYYLMKDVGCEPDKASFRIVIKGLESKGEAVDLRTVKQDAQRLYGESLEFLEEEE 240
           +LAMESYYLMK+VGCEP+KASFRIVIKGLE KGEAVDLRTVKQDAQ+LYGESLEFLEE E
Sbjct: 181 KLAMESYYLMKEVGCEPNKASFRIVIKGLELKGEAVDLRTVKQDAQKLYGESLEFLEEAE 240

Query: 241 EGATATSI 248
           EGATA SI
Sbjct: 241 EGATAISI 248

[Close]

BLAST of CsGy7G001990 vs. NCBI nr
Match: TYK08129.1 (pentatricopeptide repeat-containing protein [Cucumis melo var. makuwa])

HSP 1 Score: 433 bits (1114), Expect = 4.42e-152
Identity = 228/248 (91.94%), Postives = 232/248 (93.55%), Query Frame = 0


Query: 1   MSFLATPSSPTIFSPLLKFPSSVGTACCLQLGRAEGYPRVTMRGGSENRKPLQKGRNLSI 60
           MSFL T  SPTI SP LK PSSV   CCLQLGRAEGYPRVTMRGGSENRKPLQKGRNLSI
Sbjct: 1   MSFLLTLPSPTILSPPLKLPSSVRKPCCLQLGRAEGYPRVTMRGGSENRKPLQKGRNLSI 60

Query: 61  EAIQAVQSLKRTKKDLQQLDRVYDSKIRRLLKFDMLAVLRELLRQNECSLALKVFEDVRK 120
           EAIQAVQSLKRTKKDLQQLDRVYDSKIRRLLKFDMLAVLRELLRQNECSLALKVFEDVR 
Sbjct: 61  EAIQAVQSLKRTKKDLQQLDRVYDSKIRRLLKFDMLAVLRELLRQNECSLALKVFEDVRN 120

Query: 121 EHWYKPQVSLYADIITVLASNGLFERVQIILSYMKAEADLAPEIDGFNALLKALVSHNLG 180
           EHWYKPQVSLYADIITVLASNGLFERVQIILSYMKAE DLAPEIDGFNALLK LV HNLG
Sbjct: 121 EHWYKPQVSLYADIITVLASNGLFERVQIILSYMKAETDLAPEIDGFNALLKVLVGHNLG 180

Query: 181 ELAMESYYLMKDVGCEPDKASFRIVIKGLESKGEAVDLRTVKQDAQRLYGESLEFLEEEE 240
           +LAMESYYLMK+VGCEP+KASFRIVIKGLE KGEAVDLRTVKQDAQ+LYGESLEFLEE E
Sbjct: 181 KLAMESYYLMKEVGCEPNKASFRIVIKGLELKGEAVDLRTVKQDAQKLYGESLEFLEEAE 240

Query: 241 EGATATSI 248
           EGATA SI
Sbjct: 241 EGATAISI 248

[Close]

BLAST of CsGy7G001990 vs. NCBI nr
Match: XP_038888189.1 (protein THYLAKOID ASSEMBLY 8, chloroplastic-like [Benincasa hispida])

HSP 1 Score: 418 bits (1074), Expect = 5.50e-146
Identity = 221/247 (89.47%), Postives = 227/247 (91.90%), Query Frame = 0


Query: 1   MSFLATPSSPTIFSPLLKFPSSVGTACCLQLGRAEGYPRVTMRGGSENRKPLQKGRNLSI 60
           MSFL  P SPTI SP  K  SS G A CL LGRAEGY +VTMRGGSENRKPLQKGRNLSI
Sbjct: 1   MSFLIRPPSPTILSPSYKLLSSGGEASCLLLGRAEGYRKVTMRGGSENRKPLQKGRNLSI 60

Query: 61  EAIQAVQSLKRTKKDLQQLDRVYDSKIRRLLKFDMLAVLRELLRQNECSLALKVFEDVRK 120
           EAIQAVQSLKRTKKDLQQLDRVYDSKIRRLLKFDM+AVLRELLRQNECSLALKVFEDVR 
Sbjct: 61  EAIQAVQSLKRTKKDLQQLDRVYDSKIRRLLKFDMMAVLRELLRQNECSLALKVFEDVRN 120

Query: 121 EHWYKPQVSLYADIITVLASNGLFERVQIILSYMKAEADLAPEIDGFNALLKALVSHNLG 180
           EHWYKPQVSLYADII VLASNGLFERVQII SY+KAE DLAPEIDGFNALLKALVSHNLG
Sbjct: 121 EHWYKPQVSLYADIIRVLASNGLFERVQIIHSYLKAETDLAPEIDGFNALLKALVSHNLG 180

Query: 181 ELAMESYYLMKDVGCEPDKASFRIVIKGLESKGEAVDLRTVKQDAQRLYGESLEFLEEEE 240
           ELAMESYYLMK++GCEPDKASFRIVIKGLESKGEAVDLRTVKQDAQ+LYGESLEFLEEEE
Sbjct: 181 ELAMESYYLMKEIGCEPDKASFRIVIKGLESKGEAVDLRTVKQDAQKLYGESLEFLEEEE 240

Query: 241 EGATATS 247
           E A A S
Sbjct: 241 EAAIAIS 247

[Close]

BLAST of CsGy7G001990 vs. NCBI nr
Match: XP_022952712.1 (protein THYLAKOID ASSEMBLY 8-like, chloroplastic [Cucurbita moschata])

HSP 1 Score: 385 bits (988), Expect = 6.90e-133
Identity = 206/247 (83.40%), Postives = 217/247 (87.85%), Query Frame = 0


Query: 1   MSFLATPSSPTIFSPLLKFPSSVGTACCLQLGRAEGYPRVTMRGGSENRKPLQKGRNLSI 60
           MSFLAT  S TI SP      S G    L+LGR EGY RVTMRGGSENRKPLQKGRNLSI
Sbjct: 1   MSFLATTPSSTILSPPYTLLGSGGKVSYLRLGRVEGYRRVTMRGGSENRKPLQKGRNLSI 60

Query: 61  EAIQAVQSLKRTKKDLQQLDRVYDSKIRRLLKFDMLAVLRELLRQNECSLALKVFEDVRK 120
           EAIQAVQSLKR KKDLQQLDRVYDSKIRRLLKFDM+AVLRELLRQNECSLALKVFEDVRK
Sbjct: 61  EAIQAVQSLKRAKKDLQQLDRVYDSKIRRLLKFDMMAVLRELLRQNECSLALKVFEDVRK 120

Query: 121 EHWYKPQVSLYADIITVLASNGLFERVQIILSYMKAEADLAPEIDGFNALLKALVSHNLG 180
           E WYKPQVSLYADI++VLASNGLFE+VQII SY KAE DLAPEI+GFN LLKALVS+NLG
Sbjct: 121 EDWYKPQVSLYADIVSVLASNGLFEQVQIIHSYFKAETDLAPEIEGFNNLLKALVSYNLG 180

Query: 181 ELAMESYYLMKDVGCEPDKASFRIVIKGLESKGEAVDLRTVKQDAQRLYGESLEFLEEEE 240
           ELAMESYYLMK+VGCEPDK SFRIVIKGLES  E+VDLRTVK+DAQ LYGESLEFLEEE+
Sbjct: 181 ELAMESYYLMKEVGCEPDKTSFRIVIKGLESTRESVDLRTVKKDAQELYGESLEFLEEED 240

Query: 241 EGATATS 247
           E AT  S
Sbjct: 241 EAATGIS 247

[Close]

BLAST of CsGy7G001990 vs. ExPASy TrEMBL
Match: A0A0A0K6A9 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G027870 PE=4 SV=1)

HSP 1 Score: 477 bits (1228), Expect = 9.02e-170
Identity = 249/249 (100.00%), Postives = 249/249 (100.00%), Query Frame = 0


Query: 1   MSFLATPSSPTIFSPLLKFPSSVGTACCLQLGRAEGYPRVTMRGGSENRKPLQKGRNLSI 60
           MSFLATPSSPTIFSPLLKFPSSVGTACCLQLGRAEGYPRVTMRGGSENRKPLQKGRNLSI
Sbjct: 1   MSFLATPSSPTIFSPLLKFPSSVGTACCLQLGRAEGYPRVTMRGGSENRKPLQKGRNLSI 60

Query: 61  EAIQAVQSLKRTKKDLQQLDRVYDSKIRRLLKFDMLAVLRELLRQNECSLALKVFEDVRK 120
           EAIQAVQSLKRTKKDLQQLDRVYDSKIRRLLKFDMLAVLRELLRQNECSLALKVFEDVRK
Sbjct: 61  EAIQAVQSLKRTKKDLQQLDRVYDSKIRRLLKFDMLAVLRELLRQNECSLALKVFEDVRK 120

Query: 121 EHWYKPQVSLYADIITVLASNGLFERVQIILSYMKAEADLAPEIDGFNALLKALVSHNLG 180
           EHWYKPQVSLYADIITVLASNGLFERVQIILSYMKAEADLAPEIDGFNALLKALVSHNLG
Sbjct: 121 EHWYKPQVSLYADIITVLASNGLFERVQIILSYMKAEADLAPEIDGFNALLKALVSHNLG 180

Query: 181 ELAMESYYLMKDVGCEPDKASFRIVIKGLESKGEAVDLRTVKQDAQRLYGESLEFLEEEE 240
           ELAMESYYLMKDVGCEPDKASFRIVIKGLESKGEAVDLRTVKQDAQRLYGESLEFLEEEE
Sbjct: 181 ELAMESYYLMKDVGCEPDKASFRIVIKGLESKGEAVDLRTVKQDAQRLYGESLEFLEEEE 240

Query: 241 EGATATSIQ 249
           EGATATSIQ
Sbjct: 241 EGATATSIQ 249

[Close]

BLAST of CsGy7G001990 vs. ExPASy TrEMBL
Match: A0A5A7UZI6 (Pentatricopeptide repeat-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold54G00170 PE=4 SV=1)

HSP 1 Score: 435 bits (1118), Expect = 5.26e-153
Identity = 229/248 (92.34%), Postives = 233/248 (93.95%), Query Frame = 0


Query: 1   MSFLATPSSPTIFSPLLKFPSSVGTACCLQLGRAEGYPRVTMRGGSENRKPLQKGRNLSI 60
           MSFL T  SPTI SP LK PSSV   CCLQLGRAEGYPRVTMRGGSENRKPLQKGRNLSI
Sbjct: 1   MSFLLTLPSPTILSPPLKLPSSVRKPCCLQLGRAEGYPRVTMRGGSENRKPLQKGRNLSI 60

Query: 61  EAIQAVQSLKRTKKDLQQLDRVYDSKIRRLLKFDMLAVLRELLRQNECSLALKVFEDVRK 120
           EAIQAVQSLKRTKKDLQQLDRVYDSKIRRLLKFDMLAVLRELLRQNECSLALKVFEDVR 
Sbjct: 61  EAIQAVQSLKRTKKDLQQLDRVYDSKIRRLLKFDMLAVLRELLRQNECSLALKVFEDVRN 120

Query: 121 EHWYKPQVSLYADIITVLASNGLFERVQIILSYMKAEADLAPEIDGFNALLKALVSHNLG 180
           EHWYKPQVSLYADIITVLASNGLFERVQIILSYMKAE DLAPEIDGFNALLKALV HNLG
Sbjct: 121 EHWYKPQVSLYADIITVLASNGLFERVQIILSYMKAETDLAPEIDGFNALLKALVGHNLG 180

Query: 181 ELAMESYYLMKDVGCEPDKASFRIVIKGLESKGEAVDLRTVKQDAQRLYGESLEFLEEEE 240
           +LAMESYYLMK+VGCEP+KASFRIVIKGLE KGEAVDLRTVKQDAQ+LYGESLEFLEE E
Sbjct: 181 KLAMESYYLMKEVGCEPNKASFRIVIKGLELKGEAVDLRTVKQDAQKLYGESLEFLEEAE 240

Query: 241 EGATATSI 248
           EGATA SI
Sbjct: 241 EGATAISI 248

[Close]

BLAST of CsGy7G001990 vs. ExPASy TrEMBL
Match: A0A1S3BRZ8 (pentatricopeptide repeat-containing protein At3g46870-like OS=Cucumis melo OX=3656 GN=LOC103492562 PE=4 SV=1)

HSP 1 Score: 435 bits (1118), Expect = 5.26e-153
Identity = 229/248 (92.34%), Postives = 233/248 (93.95%), Query Frame = 0


Query: 1   MSFLATPSSPTIFSPLLKFPSSVGTACCLQLGRAEGYPRVTMRGGSENRKPLQKGRNLSI 60
           MSFL T  SPTI SP LK PSSV   CCLQLGRAEGYPRVTMRGGSENRKPLQKGRNLSI
Sbjct: 1   MSFLLTLPSPTILSPPLKLPSSVRKPCCLQLGRAEGYPRVTMRGGSENRKPLQKGRNLSI 60

Query: 61  EAIQAVQSLKRTKKDLQQLDRVYDSKIRRLLKFDMLAVLRELLRQNECSLALKVFEDVRK 120
           EAIQAVQSLKRTKKDLQQLDRVYDSKIRRLLKFDMLAVLRELLRQNECSLALKVFEDVR 
Sbjct: 61  EAIQAVQSLKRTKKDLQQLDRVYDSKIRRLLKFDMLAVLRELLRQNECSLALKVFEDVRN 120

Query: 121 EHWYKPQVSLYADIITVLASNGLFERVQIILSYMKAEADLAPEIDGFNALLKALVSHNLG 180
           EHWYKPQVSLYADIITVLASNGLFERVQIILSYMKAE DLAPEIDGFNALLKALV HNLG
Sbjct: 121 EHWYKPQVSLYADIITVLASNGLFERVQIILSYMKAETDLAPEIDGFNALLKALVGHNLG 180

Query: 181 ELAMESYYLMKDVGCEPDKASFRIVIKGLESKGEAVDLRTVKQDAQRLYGESLEFLEEEE 240
           +LAMESYYLMK+VGCEP+KASFRIVIKGLE KGEAVDLRTVKQDAQ+LYGESLEFLEE E
Sbjct: 181 KLAMESYYLMKEVGCEPNKASFRIVIKGLELKGEAVDLRTVKQDAQKLYGESLEFLEEAE 240

Query: 241 EGATATSI 248
           EGATA SI
Sbjct: 241 EGATAISI 248

[Close]

BLAST of CsGy7G001990 vs. ExPASy TrEMBL
Match: A0A5D3CCT4 (Pentatricopeptide repeat-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold886G00060 PE=4 SV=1)

HSP 1 Score: 433 bits (1114), Expect = 2.14e-152
Identity = 228/248 (91.94%), Postives = 232/248 (93.55%), Query Frame = 0


Query: 1   MSFLATPSSPTIFSPLLKFPSSVGTACCLQLGRAEGYPRVTMRGGSENRKPLQKGRNLSI 60
           MSFL T  SPTI SP LK PSSV   CCLQLGRAEGYPRVTMRGGSENRKPLQKGRNLSI
Sbjct: 1   MSFLLTLPSPTILSPPLKLPSSVRKPCCLQLGRAEGYPRVTMRGGSENRKPLQKGRNLSI 60

Query: 61  EAIQAVQSLKRTKKDLQQLDRVYDSKIRRLLKFDMLAVLRELLRQNECSLALKVFEDVRK 120
           EAIQAVQSLKRTKKDLQQLDRVYDSKIRRLLKFDMLAVLRELLRQNECSLALKVFEDVR 
Sbjct: 61  EAIQAVQSLKRTKKDLQQLDRVYDSKIRRLLKFDMLAVLRELLRQNECSLALKVFEDVRN 120

Query: 121 EHWYKPQVSLYADIITVLASNGLFERVQIILSYMKAEADLAPEIDGFNALLKALVSHNLG 180
           EHWYKPQVSLYADIITVLASNGLFERVQIILSYMKAE DLAPEIDGFNALLK LV HNLG
Sbjct: 121 EHWYKPQVSLYADIITVLASNGLFERVQIILSYMKAETDLAPEIDGFNALLKVLVGHNLG 180

Query: 181 ELAMESYYLMKDVGCEPDKASFRIVIKGLESKGEAVDLRTVKQDAQRLYGESLEFLEEEE 240
           +LAMESYYLMK+VGCEP+KASFRIVIKGLE KGEAVDLRTVKQDAQ+LYGESLEFLEE E
Sbjct: 181 KLAMESYYLMKEVGCEPNKASFRIVIKGLELKGEAVDLRTVKQDAQKLYGESLEFLEEAE 240

Query: 241 EGATATSI 248
           EGATA SI
Sbjct: 241 EGATAISI 248

[Close]

BLAST of CsGy7G001990 vs. ExPASy TrEMBL
Match: A0A6J1HX85 (protein THYLAKOID ASSEMBLY 8-like, chloroplastic OS=Cucurbita maxima OX=3661 GN=LOC111468293 PE=4 SV=1)

HSP 1 Score: 385 bits (988), Expect = 3.34e-133
Identity = 206/247 (83.40%), Postives = 218/247 (88.26%), Query Frame = 0


Query: 1   MSFLATPSSPTIFSPLLKFPSSVGTACCLQLGRAEGYPRVTMRGGSENRKPLQKGRNLSI 60
           MSFLAT  S TI SP      S G    L+LGR EGY RVTMRGGSENRKPLQKGRNLSI
Sbjct: 1   MSFLATTPSSTILSPPYTLLGSGGKVSYLRLGRVEGYRRVTMRGGSENRKPLQKGRNLSI 60

Query: 61  EAIQAVQSLKRTKKDLQQLDRVYDSKIRRLLKFDMLAVLRELLRQNECSLALKVFEDVRK 120
           EAIQAVQSLKR KKDLQQLDRVYDSKIRRLLKFDM+AVLRELLRQNECSLALKVFEDVRK
Sbjct: 61  EAIQAVQSLKRAKKDLQQLDRVYDSKIRRLLKFDMMAVLRELLRQNECSLALKVFEDVRK 120

Query: 121 EHWYKPQVSLYADIITVLASNGLFERVQIILSYMKAEADLAPEIDGFNALLKALVSHNLG 180
           E WYKPQVSLYADI++VLASNGLFE+VQII SY+KAE DLAPEI+GFN LLKALVS+NLG
Sbjct: 121 EDWYKPQVSLYADIVSVLASNGLFEQVQIIHSYLKAETDLAPEIEGFNNLLKALVSYNLG 180

Query: 181 ELAMESYYLMKDVGCEPDKASFRIVIKGLESKGEAVDLRTVKQDAQRLYGESLEFLEEEE 240
           ELAMESYYLMK+VGCEPDKASFRIVIKGLES  E+VDLR VK+DAQ LYGESLEFLEEE+
Sbjct: 181 ELAMESYYLMKEVGCEPDKASFRIVIKGLESTRESVDLRPVKKDAQELYGESLEFLEEED 240

Query: 241 EGATATS 247
           E AT  S
Sbjct: 241 EAATGIS 247

[Close]

BLAST of CsGy7G001990 vs. TAIR 10
Match: AT5G09320.1 (Vacuolar sorting protein 9 (VPS9) domain )

HSP 1 Score: 234.6 bits (597), Expect = 8.8e-62
Identity = 127/224 (56.70%), Postives = 157/224 (70.09%), Query Frame = 0


Query: 40  VTMRGGSENRKPLQKGRNLSIEAIQAVQSLKR---------------TKKDLQQLDRVYD 99
           + MR  S+NRKPLQ+GR LSIEAIQAVQ+LKR               T      LDRV  
Sbjct: 487 IKMRDRSKNRKPLQRGRMLSIEAIQAVQALKRANPLLPPPPVPSTSTTSSSSALLDRVII 546

Query: 100 SKIRRLLKFDMLAVLRELLRQNECSLALKVFEDVRKEHWYKPQVSLYADIITVLASNGLF 159
           SK RRLLKFDM+AVLRELLRQNECSLALKVFE++RKE+WYKPQV +Y D+ITV+A N L 
Sbjct: 547 SKFRRLLKFDMVAVLRELLRQNECSLALKVFEEIRKEYWYKPQVRMYTDMITVMADNSLM 606

Query: 160 ERVQIILSYMKAEADLAPEIDGFNALLKALVSHNLGELAMESYYLMKDVGCEPDKASFRI 219
           E V  + S MK+E  L  EI+ FN LL  L++H L +L M+ Y  M+ +G EPD+ASFR+
Sbjct: 607 EEVNYLYSAMKSEKGLMAEIEWFNTLLTILLNHKLFDLVMDCYAFMQSIGYEPDRASFRV 666

Query: 220 VIKGLESKGEAVDLRTVKQDAQRLYGESLEFLEEEEEGATATSI 249
           ++ GLES GE      V+QDA   YGESLEF+EE+EE ++ TS+
Sbjct: 667 LVLGLESNGEMGLSAIVRQDAHEYYGESLEFIEEDEEISSGTSV 710

[Close]

BLAST of CsGy7G001990 vs. TAIR 10
Match: AT3G46870.1 (Pentatricopeptide repeat (PPR) superfamily protein )

HSP 1 Score: 98.6 bits (244), Expect = 7.6e-21
Identity = 65/193 (33.68%), Postives = 105/193 (54.40%), Query Frame = 0


Query: 49  RKPLQKGRNL-SIEAIQAVQSLKRTKKDLQQLDRVYDSKIRRLLKFDMLAVLRELLRQNE 108
           R PL +G+ L   EA+  +  LKR K+D ++LD+   + + RLLK DMLAV+ EL RQ E
Sbjct: 63  RGPLWRGKKLIGKEALFVILGLKRLKEDDEKLDKFIKTHVFRLLKLDMLAVIGELERQEE 122

Query: 109 CSLALKVFEDVRKEHWYKPQVSLYADIITVLASNGLFERVQIILSYMKAEADLAPEIDGF 168
            +LA+K+FE ++K+ WY+P V +Y D+I  LA +   +    +   MK E +L P+   +
Sbjct: 123 TALAIKMFEVIQKQEWYQPDVFMYKDLIVSLAKSKRMDEAMALWEKMKKE-NLFPDSQTY 182

Query: 169 NALLKALVSHNLGELAMESYYLMKDVGCEPDKASFRIVIKGLESKGEAVDLRTVKQDAQR 228
             +++  +       AM  Y  M      P++  FR+++KGL      +    VK+D + 
Sbjct: 183 TEVIRGFLRDGCPADAMNVYEDMLKSPDPPEELPFRVLLKGL--LPHPLLRNKVKKDFEE 242

Query: 229 LYGESLEFLEEEE 241
           L+ E   +   EE
Sbjct: 243 LFPEKHAYDPPEE 252

[Close]

BLAST of CsGy7G001990 vs. TAIR 10
Match: AT3G27750.1 (FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 16 plant structures; EXPRESSED DURING: 12 growth stages; BEST Arabidopsis thaliana protein match is: Vacuolar sorting protein 9 (VPS9) domain (TAIR:AT5G09320.1); Has 106 Blast hits to 106 proteins in 16 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 4; Plants - 102; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). )

HSP 1 Score: 87.4 bits (215), Expect = 1.7e-17
Identity = 65/177 (36.72%), Postives = 95/177 (53.67%), Query Frame = 0


Query: 44  GGSENRKPLQKGRNLSIEAIQAVQSLKRTKKDLQQLDRVYDSKIRRLLKFDMLAVLRELL 103
           G  +NR PL KGR LS EAIQ++QSLKR  +    L       +RRL+K D+++VLRELL
Sbjct: 34  GPRDNRGPLLKGRILSTEAIQSIQSLKRAHRTGVSLSLTL-RPLRRLIKSDLISVLRELL 93

Query: 104 RQNECSLALKVFEDVRKEHWYKP-QVSLYADIITVLASNGLFERVQIILSYMKAEADLAP 163
           RQ+ C+LA+ V   +R E  Y P  + LYADI+  L  N  F+ +  ++  +    D   
Sbjct: 94  RQDYCTLAVHVLSTLRTE--YPPLDLVLYADIVNALTRNKEFDEIDRLIGEIDG-IDQRS 153

Query: 164 EIDGFNALLKALVSHNLGELAMESYYLMKDVG-----CEPDKASFRIVIKGLESKGE 215
           +      L++A+V     E  +  Y LM++ G      E D+    ++ KGL   GE
Sbjct: 154 DDKALAKLIRAVVGAERRESVVRVYTLMRESGWGSESWEADEYVAEVLSKGLLRLGE 206

[Close]

BLAST of CsGy7G001990 vs. TAIR 10
Match: AT1G62350.1 (Pentatricopeptide repeat (PPR) superfamily protein )

HSP 1 Score: 86.3 bits (212), Expect = 3.9e-17
Identity = 51/152 (33.55%), Postives = 84/152 (55.26%), Query Frame = 0


Query: 58  LSIEAIQAVQSLKRTKKDLQQLDRVYDSKIRRLLKFDMLAVLRELLRQNECSLALKVFED 117
           +S E + A + LKR +    +LDR   S + RLLK D+++VL E  RQN+  L +K++E 
Sbjct: 1   MSKEGLIAAKELKRLQTQSVRLDRFIGSHVSRLLKSDLVSVLAEFQRQNQVFLCMKLYEV 60

Query: 118 VRKEHWYKPQVSLYADIITVLASNGLFERVQIILSYMKAEADLAPEIDGFNALLKALVSH 177
           VR+E WY+P +  Y D++ +LA N   +  + +   +K E  L  +   F  L++  + +
Sbjct: 61  VRREIWYRPDMFFYRDMLMMLARNKKVDETKKVWEDLKKEEVLFDQ-HTFGDLVRGFLDN 120

Query: 178 NLGELAMESYYLMKDVGCEPDKASFRIVIKGL 210
            L   AM  Y  M++    P    FR+++KGL
Sbjct: 121 ELPLEAMRLYGEMRESPDRPLSLPFRVILKGL 151

[Close]

BLAST of CsGy7G001990 vs. TAIR 10
Match: AT3G53170.1 (Tetratricopeptide repeat (TPR)-like superfamily protein )

HSP 1 Score: 60.1 bits (144), Expect = 3.0e-09
Identity = 40/149 (26.85%), Postives = 75/149 (50.34%), Query Frame = 0


Query: 60  IEAIQAVQSLKRTKKDLQQLDRVYDS-KIRRLLKFDMLAVLRELLRQNECSLALKVFEDV 119
           ++  + +  + RT   ++ ++R  +S K   L    +L  L E +++N    ALK+F  +
Sbjct: 75  VDPKKELSRILRTDAAVKGIERKANSEKYLTLWPKAVLEALDEAIKENRWQSALKIFNLL 134

Query: 120 RKEHWYKPQVSLYADIITVLASNGLFERVQIILSYMKAEADLAPEIDGFNALLKALVSHN 179
           RK+HWY+P+   Y  +  VL +    ++  ++   M +E  L P ID + +L+       
Sbjct: 135 RKQHWYEPRCKTYTKLFKVLGNCKQPDQASLLFEVMLSEG-LKPTIDVYTSLISVYGKSE 194

Query: 180 LGELAMESYYLMKDVG-CEPDKASFRIVI 207
           L + A  +   MK V  C+PD  +F ++I
Sbjct: 195 LLDKAFSTLEYMKSVSDCKPDVFTFTVLI 222

The following BLAST results are available for this feature:

BLAST of CsGy7G001990 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9STF9	1.1e-19	33.68	Protein THYLAKOID ASSEMBLY 8-like, chloroplastic OS=Arabidopsis thaliana OX=3702...	[more]
Q9LVW6	2.5e-16	36.72	Protein THYLAKOID ASSEMBLY 8, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=T...	[more]
Q1PFH7	5.5e-16	33.55	Pentatricopeptide repeat-containing protein At1g62350 OS=Arabidopsis thaliana OX...	[more]
Q9SCP4	4.2e-08	26.85	Pentatricopeptide repeat-containing protein At3g53170 OS=Arabidopsis thaliana OX...	[more]
O82178	7.1e-08	29.36	Pentatricopeptide repeat-containing protein At2g35130 OS=Arabidopsis thaliana OX...	[more]

BLAST of CsGy7G001990 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_031744771.1	1.86e-169	100.00	protein THYLAKOID ASSEMBLY 8-like, chloroplastic [Cucumis sativus] >KGN43371.1 h...	[more]
XP_008451190.1	1.09e-152	92.34	PREDICTED: pentatricopeptide repeat-containing protein At3g46870-like [Cucumis m...	[more]
TYK08129.1	4.42e-152	91.94	pentatricopeptide repeat-containing protein [Cucumis melo var. makuwa]	[more]
XP_038888189.1	5.50e-146	89.47	protein THYLAKOID ASSEMBLY 8, chloroplastic-like [Benincasa hispida]	[more]
XP_022952712.1	6.90e-133	83.40	protein THYLAKOID ASSEMBLY 8-like, chloroplastic [Cucurbita moschata]	[more]

BLAST of CsGy7G001990 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0K6A9	9.02e-170	100.00	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G027870 PE=4 SV=1	[more]
A0A5A7UZI6	5.26e-153	92.34	Pentatricopeptide repeat-containing protein OS=Cucumis melo var. makuwa OX=11946...	[more]
A0A1S3BRZ8	5.26e-153	92.34	pentatricopeptide repeat-containing protein At3g46870-like OS=Cucumis melo OX=36...	[more]
A0A5D3CCT4	2.14e-152	91.94	Pentatricopeptide repeat-containing protein OS=Cucumis melo var. makuwa OX=11946...	[more]
A0A6J1HX85	3.34e-133	83.40	protein THYLAKOID ASSEMBLY 8-like, chloroplastic OS=Cucurbita maxima OX=3661 GN=...	[more]

BLAST of CsGy7G001990 vs. TAIR 10


Match Name	E-value	Identity	Description
AT5G09320.1	8.8e-62	56.70	Vacuolar sorting protein 9 (VPS9) domain	[more]
AT3G46870.1	7.6e-21	33.68	Pentatricopeptide repeat (PPR) superfamily protein	[more]
AT3G27750.1	1.7e-17	36.72	FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknow...	[more]
AT1G62350.1	3.9e-17	33.55	Pentatricopeptide repeat (PPR) superfamily protein	[more]
AT3G53170.1	3.0e-09	26.85	Tetratricopeptide repeat (TPR)-like superfamily protein	[more]

InterPro

Analysis Name: InterPro Annotations of Cucumber (Gy14) v2.1
Date Performed: 2021-10-25

Position :

Zoom :

x 1


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR002885	Pentatricopeptide repeat	PFAM	PF13041	PPR_2	coord: 165..209 e-value: 4.2E-8 score: 33.3
IPR002885	Pentatricopeptide repeat	TIGRFAM	TIGR00756	TIGR00756	coord: 167..198 e-value: 0.0018 score: 16.3
IPR011990	Tetratricopeptide-like helical domain superfamily	GENE3D	1.25.40.10	Tetratricopeptide repeat domain	coord: 57..228 e-value: 9.6E-45 score: 154.5
None	No IPR available	PANTHER	PTHR47594:SF4	THYLAKOID ASSEMBLY8	coord: 16..243
IPR044190	Protein THYLAKOID ASSEMBLY 8-like	PANTHER	PTHR47594	PPR CONTAINING PLANT-LIKE PROTEIN	coord: 16..243

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CsGy7G001990.2	CsGy7G001990.2	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0009658	chloroplast organization
biological_process	GO:0000373	Group II intron splicing
molecular_function	GO:0005515	protein binding
molecular_function	GO:0003723	RNA binding