CsGy6G035680 (gene) Cucumber (Gy14) v2.1

Overview
NameCsGy6G035680
Typegene
OrganismCucumis sativus L. var. sativus cv. Gy14 (Cucumber (Gy14) v2.1)
DescriptionVQ domain-containing protein
LocationGy14Chr6: 31414798 .. 31415779 (-)
RNA-Seq ExpressionCsGy6G035680
SyntenyCsGy6G035680
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptidethree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGAAATTCGTAGTAGAAGAAGCAGTAGCCTCCTCCCAAACTGCACAAAGAAAATCAGAAATGGGAAACTCTAAGAAGACGGCGGAAGTGAGGGTGGTGCTAATTGAGTACCACCACATTCAAACCGACGCTTCCAACTTCAAGTCCGTCGTTCAAAGTCTCACCGGAAAGCATCCCCCCGCCGCAGAGGACGACGGAGGAGAGATCTGCAGGAAGAGGCAGAGAGTGGTGTCTCAGAATAATAATCATGAGAGTATAACTAATATTAATCAAAGGGTTAAGATGATCCACACCAAGTCGTTTAAGGACTTGGACCGCTTGCTCGCCCTTGAACTTCCTTCCATGGAAGATCTTAACTGGATTCTCACTGATTAATCTTAACTCATTTCATTATACATTGTTTTTTTTTCCCTTCTTTTTCCCAATATCCCTTTGTAACATTCTTCATTTTTTCATCGGGATTTTTTATTATTAGTGTCGTATTATTTTTCCGTTTTATGAGTAAAATTTTCTTCTGCTATCCATCCCTTGAAATCAAAGCTCTATTTATATTTTGTGTGGATGAATAGTTTAAACATGGCTCAAATGCTATATATGTTGCCCACTTTCTTAGAACTTTTACTTACCCCATTACAAGTTCAAACAAATTTACACCATGAAACTACGTTAAAATGAAGGTTGTGATTGAGAACGCCAAGGACAAAAATGAAAATTGGTTGATAATAAAAGATATTTAATTTTGAAAAGAAAAACGATAGATGTCATTAATGTGTTTCACTTTCAAATGTCAGTGAAGACAATAAAGAAAGATGGAAATAAATAATAATAATGATAACAATAATAATAAATGTTATTAAAAAATAGAGAAAAGAAAATTCTTAACTTAGAAGAAGAGAAGAGACGTGAAGGTAAAAAACACACTTCGAAAATTGATGACATCTTCACTTAAGTTTTTGACTGTGCTAGATAATTCAAAAGGAAT

mRNA sequence

ATGAAATTCGTAGTAGAAGAAGCAGTAGCCTCCTCCCAAACTGCACAAAGAAAATCAGAAATGGGAAACTCTAAGAAGACGGCGGAAGTGAGGGTGGTGCTAATTGAGTACCACCACATTCAAACCGACGCTTCCAACTTCAAGTCCGTCGTTCAAAGTCTCACCGGAAAGCATCCCCCCGCCGCAGAGGACGACGGAGGAGAGATCTGCAGGAAGAGGCAGAGAGTGGTGTCTCAGAATAATAATCATGAGAGTATAACTAATATTAATCAAAGGGTTAAGATGATCCACACCAAGTCGTTTAAGGACTTGGACCGCTTGCTCGCCCTTGAACTTCCTTCCATGGAAGATCTTAACTGGATTCTCACTGATTAATCTTAACTCATTTCATTATACATTGTTTTTTTTTCCCTTCTTTTTCCCAATATCCCTTTGTAACATTCTTCATTTTTTCATCGGGATTTTTTATTATTAGTGTCGTATTATTTTTCCGTTTTATGAGTAAAATTTTCTTCTGCTATCCATCCCTTGAAATCAAAGCTCTATTTATATTTTGTGTGGATGAATAGTTTAAACATGGCTCAAATGCTATATATGTTGCCCACTTTCTTAGAACTTTTACTTACCCCATTACAAGTTCAAACAAATTTACACCATGAAACTACGTTAAAATGAAGGTTGTGATTGAGAACGCCAAGGACAAAAATGAAAATTGGTTGATAATAAAAGATATTTAATTTTGAAAAGAAAAACGATAGATGTCATTAATGTGTTTCACTTTCAAATGTCAGTGAAGACAATAAAGAAAGATGGAAATAAATAATAATAATGATAACAATAATAATAAATGTTATTAAAAAATAGAGAAAAGAAAATTCTTAACTTAGAAGAAGAGAAGAGACGTGAAGGTAAAAAACACACTTCGAAAATTGATGACATCTTCACTTAAGTTTTTGACTGTGCTAGATAATTCAAAAGGAAT

Coding sequence (CDS)

ATGAAATTCGTAGTAGAAGAAGCAGTAGCCTCCTCCCAAACTGCACAAAGAAAATCAGAAATGGGAAACTCTAAGAAGACGGCGGAAGTGAGGGTGGTGCTAATTGAGTACCACCACATTCAAACCGACGCTTCCAACTTCAAGTCCGTCGTTCAAAGTCTCACCGGAAAGCATCCCCCCGCCGCAGAGGACGACGGAGGAGAGATCTGCAGGAAGAGGCAGAGAGTGGTGTCTCAGAATAATAATCATGAGAGTATAACTAATATTAATCAAAGGGTTAAGATGATCCACACCAAGTCGTTTAAGGACTTGGACCGCTTGCTCGCCCTTGAACTTCCTTCCATGGAAGATCTTAACTGGATTCTCACTGATTAA

Protein sequence

MKFVVEEAVASSQTAQRKSEMGNSKKTAEVRVVLIEYHHIQTDASNFKSVVQSLTGKHPPAAEDDGGEICRKRQRVVSQNNNHESITNINQRVKMIHTKSFKDLDRLLALELPSMEDLNWILTD*
Homology
BLAST of CsGy6G035680 vs. NCBI nr
Match: KGN49401.1 (hypothetical protein Csa_003856 [Cucumis sativus])

HSP 1 Score: 241 bits (614), Expect = 5.93e-80
Identity = 122/124 (98.39%), Postives = 122/124 (98.39%), Query Frame = 0

Query: 1   MKFVVEEAVASSQTAQRKSEMGNSKKTAEVRVVLIEYHHIQTDASNFKSVVQSLTGKHPP 60
           MKFVVEEAVASSQT QRKSEMGNSKKTAEVRVVLIEYHHIQTDASNFKSVVQSLTGKH P
Sbjct: 1   MKFVVEEAVASSQTTQRKSEMGNSKKTAEVRVVLIEYHHIQTDASNFKSVVQSLTGKHSP 60

Query: 61  AAEDDGGEICRKRQRVVSQNNNHESITNINQRVKMIHTKSFKDLDRLLALELPSMEDLNW 120
           AAEDDGGEICRKRQRVVSQNNNHESITNINQRVKMIHTKSFKDLDRLLALELPSMEDLNW
Sbjct: 61  AAEDDGGEICRKRQRVVSQNNNHESITNINQRVKMIHTKSFKDLDRLLALELPSMEDLNW 120

Query: 121 ILTD 124
           ILTD
Sbjct: 121 ILTD 124

BLAST of CsGy6G035680 vs. NCBI nr
Match: KAA0052539.1 (VQ motif-containing protein 1-like [Cucumis melo var. makuwa] >TYK13287.1 VQ motif-containing protein 1-like [Cucumis melo var. makuwa])

HSP 1 Score: 173 bits (439), Expect = 1.41e-53
Identity = 91/104 (87.50%), Postives = 95/104 (91.35%), Query Frame = 0

Query: 21  MGNSKKTAEVRVVLIEYHHIQTDASNFKSVVQSLTGKHPPAAEDDGGEICRKRQRVVSQN 80
           MGN KKTAEVRVVLIEYHHIQTDASNFKSVVQSLTGKH   AED GGEICRKRQRVV++N
Sbjct: 1   MGNPKKTAEVRVVLIEYHHIQTDASNFKSVVQSLTGKHSSTAED-GGEICRKRQRVVARN 60

Query: 81  NNHESITNINQRVKMIHTKSFKDLDRLLALELPSMEDLNWILTD 124
           NN ESI NINQ VKMIHT SFKDLDRLL+LELPSMEDL+WILTD
Sbjct: 61  NN-ESIININQSVKMIHTASFKDLDRLLSLELPSMEDLDWILTD 102

BLAST of CsGy6G035680 vs. NCBI nr
Match: XP_038881537.1 (VQ motif-containing protein 10-like [Benincasa hispida])

HSP 1 Score: 140 bits (353), Expect = 2.34e-40
Identity = 81/114 (71.05%), Postives = 88/114 (77.19%), Query Frame = 0

Query: 21  MGNSKKTA--EVRVVLIEYHHIQTDASNFKSVVQSLTGKHPPAAEDDGGEICRKRQRVVS 80
           MGNSKKTA  EVRVV+IEYHHIQTD SNFKSVVQSLTGKH  A E  GGE C+KRQRVV+
Sbjct: 1   MGNSKKTATAEVRVVVIEYHHIQTDVSNFKSVVQSLTGKHSSAVEG-GGESCKKRQRVVA 60

Query: 81  QNNNHESITNIN--------QRVKMIHTKSFKDLDRLLALELPSMEDLNWILTD 124
           +NN  ESI NI+        +  KMI T SFKDLDRLL+L LPSMEDLNWI TD
Sbjct: 61  ENN--ESIINIDFNDGRRYEESRKMIPTTSFKDLDRLLSLHLPSMEDLNWIWTD 111

BLAST of CsGy6G035680 vs. NCBI nr
Match: KAG7034723.1 (hypothetical protein SDJN02_04453, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 104 bits (260), Expect = 2.25e-26
Identity = 57/106 (53.77%), Postives = 70/106 (66.04%), Query Frame = 0

Query: 21  MGNSKKTAE--VRVVLIEYHHIQTDASNFKSVVQSLTGKHPPAAEDDGGEICRKRQRVVS 80
           M +SK T    V+VVLIEYHH+ TD S+FKSVVQ+LTGKH  A E  GG  CRKR RV  
Sbjct: 1   MADSKNTPAGGVKVVLIEYHHVHTDVSSFKSVVQTLTGKHSSAVEGGGGT-CRKRPRVEV 60

Query: 81  QNNNHESITNINQRVKMIHTKSFKDLDRLLALELPSMEDLNWILTD 124
           +       + +N+    +H+ SFKDLDR L L LP++EDLNWI  D
Sbjct: 61  EK------SYMNRTASFLHSTSFKDLDRFLNLHLPALEDLNWIWAD 99

BLAST of CsGy6G035680 vs. NCBI nr
Match: KAG6581431.1 (hypothetical protein SDJN03_21433, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 103 bits (258), Expect = 4.54e-26
Identity = 57/106 (53.77%), Postives = 69/106 (65.09%), Query Frame = 0

Query: 21  MGNSKKTAE--VRVVLIEYHHIQTDASNFKSVVQSLTGKHPPAAEDDGGEICRKRQRVVS 80
           M +SK T    V+VVLIEYHH+ TD SNFKSVVQ+LTGKH  A E  GG  C KR RV  
Sbjct: 1   MADSKNTPAGGVKVVLIEYHHVHTDVSNFKSVVQTLTGKHSSAVEGGGGT-CGKRPRVEV 60

Query: 81  QNNNHESITNINQRVKMIHTKSFKDLDRLLALELPSMEDLNWILTD 124
           +       + +N+    +H+ SFKDLDR L L LP++EDLNWI  D
Sbjct: 61  EK------SYMNRTASFLHSTSFKDLDRFLNLHLPALEDLNWIWAD 99

BLAST of CsGy6G035680 vs. ExPASy TrEMBL
Match: A0A0A0KNW8 (VQ domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_6G523420 PE=4 SV=1)

HSP 1 Score: 241 bits (614), Expect = 2.87e-80
Identity = 122/124 (98.39%), Postives = 122/124 (98.39%), Query Frame = 0

Query: 1   MKFVVEEAVASSQTAQRKSEMGNSKKTAEVRVVLIEYHHIQTDASNFKSVVQSLTGKHPP 60
           MKFVVEEAVASSQT QRKSEMGNSKKTAEVRVVLIEYHHIQTDASNFKSVVQSLTGKH P
Sbjct: 1   MKFVVEEAVASSQTTQRKSEMGNSKKTAEVRVVLIEYHHIQTDASNFKSVVQSLTGKHSP 60

Query: 61  AAEDDGGEICRKRQRVVSQNNNHESITNINQRVKMIHTKSFKDLDRLLALELPSMEDLNW 120
           AAEDDGGEICRKRQRVVSQNNNHESITNINQRVKMIHTKSFKDLDRLLALELPSMEDLNW
Sbjct: 61  AAEDDGGEICRKRQRVVSQNNNHESITNINQRVKMIHTKSFKDLDRLLALELPSMEDLNW 120

Query: 121 ILTD 124
           ILTD
Sbjct: 121 ILTD 124

BLAST of CsGy6G035680 vs. ExPASy TrEMBL
Match: A0A5D3CN21 (VQ motif-containing protein 1-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold255G009060 PE=4 SV=1)

HSP 1 Score: 173 bits (439), Expect = 6.84e-54
Identity = 91/104 (87.50%), Postives = 95/104 (91.35%), Query Frame = 0

Query: 21  MGNSKKTAEVRVVLIEYHHIQTDASNFKSVVQSLTGKHPPAAEDDGGEICRKRQRVVSQN 80
           MGN KKTAEVRVVLIEYHHIQTDASNFKSVVQSLTGKH   AED GGEICRKRQRVV++N
Sbjct: 1   MGNPKKTAEVRVVLIEYHHIQTDASNFKSVVQSLTGKHSSTAED-GGEICRKRQRVVARN 60

Query: 81  NNHESITNINQRVKMIHTKSFKDLDRLLALELPSMEDLNWILTD 124
           NN ESI NINQ VKMIHT SFKDLDRLL+LELPSMEDL+WILTD
Sbjct: 61  NN-ESIININQSVKMIHTASFKDLDRLLSLELPSMEDLDWILTD 102

BLAST of CsGy6G035680 vs. ExPASy TrEMBL
Match: A0A6J1CYB0 (uncharacterized protein LOC111015700 OS=Momordica charantia OX=3673 GN=LOC111015700 PE=4 SV=1)

HSP 1 Score: 90.1 bits (222), Expect = 8.55e-21
Identity = 53/107 (49.53%), Postives = 69/107 (64.49%), Query Frame = 0

Query: 26  KTAEVRVVLIEYHHIQTDASNFKSVVQSLTG--KHPPAAEDD----GGEICRKRQRVVSQ 85
           K+A V+VVLIEYHH+QTD SNFKSVVQSLTG  K   +A  D     G+  ++R+R +  
Sbjct: 3   KSAPVKVVLIEYHHVQTDVSNFKSVVQSLTGNAKRSSSALPDTSFPAGDTTKRRRRDLDS 62

Query: 86  NNNHESI--TNINQRVKMIHTKSFKDLDRLLALELPSMEDLNWILTD 124
              +++I  T        +HT SFKDLDRLL   LPS++DL+WI  D
Sbjct: 63  AAANQTIIQTTATTTPFDLHTMSFKDLDRLLKFNLPSVQDLDWIWAD 109

BLAST of CsGy6G035680 vs. ExPASy TrEMBL
Match: A0A6J1KT83 (VQ motif-containing protein 10 OS=Cucurbita maxima OX=3661 GN=LOC111497400 PE=4 SV=1)

HSP 1 Score: 85.5 bits (210), Expect = 5.14e-19
Identity = 55/112 (49.11%), Postives = 65/112 (58.04%), Query Frame = 0

Query: 21  MGNSKKTAEVRVVLIEYHHIQTDASNFKSVVQSLTGKHPPAAEDDGGEICRKRQRVV--- 80
           M NSK    V+VV IEYHHIQTD SNFKSVVQ+LTG +  A    GG   RK+ RV    
Sbjct: 1   MANSKAAGPVKVVFIEYHHIQTDVSNFKSVVQTLTGMNSTA----GGNT-RKKPRVDENI 60

Query: 81  ----SQNNNHESITNINQRVKMIHTKSFKDLDRLLA-LELPSMEDLNWILTD 124
               S      +++        + + SF+DLD LL  LELPSMEDLNWI  D
Sbjct: 61  IDVRSARFEESTVSCETDTTSSVQSTSFEDLDPLLLKLELPSMEDLNWIWAD 107

BLAST of CsGy6G035680 vs. ExPASy TrEMBL
Match: A0A6J1EF02 (VQ motif-containing protein 10-like OS=Cucurbita moschata OX=3662 GN=LOC111433561 PE=4 SV=1)

HSP 1 Score: 83.6 bits (205), Expect = 2.93e-18
Identity = 53/111 (47.75%), Postives = 66/111 (59.46%), Query Frame = 0

Query: 21  MGNSKKTAEVRVVLIEYHHIQTDASNFKSVVQSLTGKHPPAAEDDGGEICRKRQR----V 80
           M NSK    V+VV IEYHHIQTD +NFKSVVQ+LTG +  A    GG   +KR+     +
Sbjct: 1   MANSKAAGPVKVVFIEYHHIQTDVTNFKSVVQTLTGMNSTA----GGNTRKKRRVDENII 60

Query: 81  VSQNNNHESITNI--NQRVKMIHTKSFKDLDRLLA-LELPSMEDLNWILTD 124
            +++   E  T          + + SF+DLD LL  LELPSMEDLNWI  D
Sbjct: 61  DARSARFEESTESCETDTTSSLQSTSFEDLDPLLLKLELPSMEDLNWIWAD 107

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
KGN49401.15.93e-8098.39hypothetical protein Csa_003856 [Cucumis sativus][more]
KAA0052539.11.41e-5387.50VQ motif-containing protein 1-like [Cucumis melo var. makuwa] >TYK13287.1 VQ mot... [more]
XP_038881537.12.34e-4071.05VQ motif-containing protein 10-like [Benincasa hispida][more]
KAG7034723.12.25e-2653.77hypothetical protein SDJN02_04453, partial [Cucurbita argyrosperma subsp. argyro... [more]
KAG6581431.14.54e-2653.77hypothetical protein SDJN03_21433, partial [Cucurbita argyrosperma subsp. sorori... [more]
Match NameE-valueIdentityDescription
A0A0A0KNW82.87e-8098.39VQ domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_6G523420 PE=4 SV=... [more]
A0A5D3CN216.84e-5487.50VQ motif-containing protein 1-like OS=Cucumis melo var. makuwa OX=1194695 GN=E56... [more]
A0A6J1CYB08.55e-2149.53uncharacterized protein LOC111015700 OS=Momordica charantia OX=3673 GN=LOC111015... [more]
A0A6J1KT835.14e-1949.11VQ motif-containing protein 10 OS=Cucurbita maxima OX=3661 GN=LOC111497400 PE=4 ... [more]
A0A6J1EF022.93e-1847.75VQ motif-containing protein 10-like OS=Cucurbita moschata OX=3662 GN=LOC11143356... [more]
Match NameE-valueIdentityDescription
InterPro
Analysis Name: InterPro Annotations of Cucumber (Gy14) v2.1
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR008889VQPFAMPF05678VQcoord: 40..60
e-value: 8.3E-9
score: 34.8
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1..26
NoneNo IPR availablePANTHERPTHR34777:SF1VQ MOTIF-CONTAINING PROTEIN 10coord: 21..123
IPR039608VQ motif-containing protein 1/10PANTHERPTHR34777VQ MOTIF-CONTAINING PROTEIN 10coord: 21..123

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CsGy6G035680.2CsGy6G035680.2mRNA