CsGy6G034840 (gene) Cucumber (Gy14) v2.1

Overview


Name	CsGy6G034840
Type	gene
Organism	Cucumis sativus L. var. sativus cv. Gy14 (Cucumber (Gy14) v2.1)
Description	50S ribosomal protein L34, chloroplastic
Location	Gy14Chr6: 30906337 .. 30907172 (+)
RNA-Seq Expression	CsGy6G034840
Synteny	CsGy6G034840

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCAGCGATATCAGTATTATCGACCCCATGGGTTTCCACCGGAGCCATTGCCGTCCGCGTTCCTTCAGCCTCTCTTGTATTCTCCACTGGTTCTAGAGGTTACTGCTCCGTATCTCTGAACACCGTCAACAACAATTCTGCCCGTTCTGGACTGCTCCATTGTTCATTTCTTCCATCTTCCTCCCTCTCCTGCTCTTCATCTTTCTCAGGTGACGAATTTATACTCTCAAATTTCTCTCTCAGTTCAAATGATTTAATGGTTATTTCTCACTAATTTGCCTATGTAATGGAGTGTTATAGTAGTTCGTTGAGGAATTCATTTGCTGTCGTTTGTGTTTATCTCTTTCGTTTGACTTAATAATTTCACAGCTGCCTGATTTCTGCTTGCATTCGATTTGTTACGACTTCTCTCGTTTTTATATCTACTAATTCTTTGTGTTTCACATGTTAAGGGGAAAATAAAAGAATATCTGTGCACCCTCTCCTGCAATATTGCGGAGCTTCTCTTGCATTGCTTAATTCTATTGATCAAGATTTTGTACCATTATCTTTACGCGGCAGTACTCGTTATTTGCAGGTTTATCTTTGGGTTTGGATTGGAGCTCTAAGGTTGGGGTCGGACAAGGGAAGGGTCGGGGCTTAGTGGTCAGGGCTGGCAAGGCTGCACTATGTCAGACTAAAAGAAACAGGTCGCGAAAATCCTTAGCTCGGACTCATGGGTTTCGCAGACGAATGAGAACCACCAATGGTAGAGCTGTTCTCAAACGCAGACGTGCCAAGGGTAGGAAGGTCCTGTGCACAAAATCCAACCCCAGCAGTGGAAAGCGTGCTTAA

mRNA sequence

ATGGCAGCGATATCAGTATTATCGACCCCATGGGTTTCCACCGGAGCCATTGCCGTCCGCGTTCCTTCAGCCTCTCTTGTATTCTCCACTGGTTCTAGAGGTTACTGCTCCGTATCTCTGAACACCGTCAACAACAATTCTGCCCGTTCTGGACTGCTCCATTGTTCATTTCTTCCATCTTCCTCCCTCTCCTGCTCTTCATCTTTCTCAGGTTTATCTTTGGGTTTGGATTGGAGCTCTAAGGTTGGGGTCGGACAAGGGAAGGGTCGGGGCTTAGTGGTCAGGGCTGGCAAGGCTGCACTATGTCAGACTAAAAGAAACAGGTCGCGAAAATCCTTAGCTCGGACTCATGGGTTTCGCAGACGAATGAGAACCACCAATGGTAGAGCTGTTCTCAAACGCAGACGTGCCAAGGGTAGGAAGGTCCTGTGCACAAAATCCAACCCCAGCAGTGGAAAGCGTGCTTAA

Coding sequence (CDS)

ATGGCAGCGATATCAGTATTATCGACCCCATGGGTTTCCACCGGAGCCATTGCCGTCCGCGTTCCTTCAGCCTCTCTTGTATTCTCCACTGGTTCTAGAGGTTACTGCTCCGTATCTCTGAACACCGTCAACAACAATTCTGCCCGTTCTGGACTGCTCCATTGTTCATTTCTTCCATCTTCCTCCCTCTCCTGCTCTTCATCTTTCTCAGGTTTATCTTTGGGTTTGGATTGGAGCTCTAAGGTTGGGGTCGGACAAGGGAAGGGTCGGGGCTTAGTGGTCAGGGCTGGCAAGGCTGCACTATGTCAGACTAAAAGAAACAGGTCGCGAAAATCCTTAGCTCGGACTCATGGGTTTCGCAGACGAATGAGAACCACCAATGGTAGAGCTGTTCTCAAACGCAGACGTGCCAAGGGTAGGAAGGTCCTGTGCACAAAATCCAACCCCAGCAGTGGAAAGCGTGCTTAA

Protein sequence

MAAISVLSTPWVSTGAIAVRVPSASLVFSTGSRGYCSVSLNTVNNNSARSGLLHCSFLPSSSLSCSSSFSGLSLGLDWSSKVGVGQGKGRGLVVRAGKAALCQTKRNRSRKSLARTHGFRRRMRTTNGRAVLKRRRAKGRKVLCTKSNPSSGKRA*

Homology

[Close]

BLAST of CsGy6G034840 vs. ExPASy Swiss-Prot
Match: P82244 (50S ribosomal protein L34, chloroplastic OS=Spinacia oleracea OX=3562 GN=RPL34 PE=1 SV=1)

HSP 1 Score: 157.9 bits (398), Expect = 9.2e-38
Identity = 106/156 (67.95%), Postives = 118/156 (75.64%), Query Frame = 0


Query: 1   MAAISVLSTPWVSTGAIAVRVPSASLVFSTGSRGYCSVSLNTVNNNSARSGLLHCSFL-P 60
           MA +S+LST      AI  R PSASL F TGSR   +    + N  SARSG LHCSFL P
Sbjct: 1   MATLSLLSTG--VGAAITNRTPSASLTFITGSR--TTNKRVSFNGGSARSGSLHCSFLAP 60

Query: 61  SSSLSCSSSFSGLSLGLDWSSKVGVGQGKGRGLVVRAGKAALCQTKRNRSRKSLARTHGF 120
           SSSL  SS+FSGLSLGLD +S  GV   + R  VVRAGKAALC TKR+RSRKSLARTHGF
Sbjct: 61  SSSL--SSNFSGLSLGLDLTSNTGVSTDRCRRFVVRAGKAALCLTKRSRSRKSLARTHGF 120

Query: 121 RRRMRTTNGRAVLKRRRAKGRKVLCTKSNPSSGKRA 156
           R RM TT+GRA+LKRRRAKGRK+LCTK+NPSSGKRA
Sbjct: 121 RLRMSTTSGRALLKRRRAKGRKILCTKTNPSSGKRA 150

[Close]

BLAST of CsGy6G034840 vs. ExPASy Swiss-Prot
Match: Q9LP37 (50S ribosomal protein L34, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=RPL34 PE=2 SV=1)

HSP 1 Score: 139.4 bits (350), Expect = 3.4e-32
Identity = 101/155 (65.16%), Postives = 112/155 (72.26%), Query Frame = 0


Query: 2   AAISVLSTPWVSTGAIAVRVPSASLVFSTGSRGYCSVSLNTVNNNSARSGLLHCSFLPSS 61
           +A S L  P  S G I   VPSASL   TG R   S SL     +SA S LLHCSFL SS
Sbjct: 11  SASSRLWNPAASNGKIC--VPSASLSLRTGCR-RSSSSL----TSSASSQLLHCSFL-SS 70

Query: 62  SLSCSSSFSGLSLGLDWSSKV-GVGQGKGRGLVVRAGKAALCQTKRNRSRKSLARTHGFR 121
            +S +S FSGLS+  D SS+  G+   + RGLVVRAGKAALCQTKR+RSRKSLARTHGFR
Sbjct: 71  PVSLASPFSGLSIAFDLSSQTSGLNGQRRRGLVVRAGKAALCQTKRSRSRKSLARTHGFR 130

Query: 122 RRMRTTNGRAVLKRRRAKGRKVLCTKSNPSSGKRA 156
           RRMRTT+GRA +KRRRAKGR  LC KSNPSSGKRA
Sbjct: 131 RRMRTTSGRATIKRRRAKGRWNLCPKSNPSSGKRA 157

[Close]

BLAST of CsGy6G034840 vs. ExPASy Swiss-Prot
Match: Q04CX6 (50S ribosomal protein L34 OS=Oenococcus oeni (strain ATCC BAA-331 / PSU-1) OX=203123 GN=rpmH PE=3 SV=1)

HSP 1 Score: 45.1 bits (105), Expect = 8.7e-04
Identity = 24/34 (70.59%), Postives = 27/34 (79.41%), Query Frame = 0


Query: 110 RKSLARTHGFRRRMRTTNGRAVLKRRRAKGRKVL 144
           ++ L R HGFR+RM T NGR VL RRRAKGRKVL
Sbjct: 9   KRHLQRVHGFRKRMSTANGRKVLARRRAKGRKVL 42

[Close]

BLAST of CsGy6G034840 vs. ExPASy Swiss-Prot
Match: Q48BE9 (50S ribosomal protein L34 OS=Pseudomonas savastanoi pv. phaseolicola (strain 1448A / Race 6) OX=264730 GN=rpmH PE=3 SV=1)

HSP 1 Score: 45.1 bits (105), Expect = 8.7e-04
Identity = 25/30 (83.33%), Postives = 25/30 (83.33%), Query Frame = 0


Query: 114 ARTHGFRRRMRTTNGRAVLKRRRAKGRKVL 144
           ARTHGFR RM T NGRAVL RRRAKGRK L
Sbjct: 13  ARTHGFRARMATKNGRAVLSRRRAKGRKRL 42

[Close]

BLAST of CsGy6G034840 vs. ExPASy Swiss-Prot
Match: Q1I2H1 (50S ribosomal protein L34 OS=Pseudomonas entomophila (strain L48) OX=384676 GN=rpmH PE=3 SV=1)

HSP 1 Score: 45.1 bits (105), Expect = 8.7e-04
Identity = 25/30 (83.33%), Postives = 25/30 (83.33%), Query Frame = 0


Query: 114 ARTHGFRRRMRTTNGRAVLKRRRAKGRKVL 144
           ARTHGFR RM T NGRAVL RRRAKGRK L
Sbjct: 13  ARTHGFRARMATKNGRAVLSRRRAKGRKRL 42

[Close]

BLAST of CsGy6G034840 vs. NCBI nr
Match: XP_004134668.1 (50S ribosomal protein L34, chloroplastic [Cucumis sativus] >KGN49298.1 hypothetical protein Csa_003653 [Cucumis sativus])

HSP 1 Score: 281 bits (719), Expect = 5.81e-95
Identity = 155/155 (100.00%), Postives = 155/155 (100.00%), Query Frame = 0


Query: 1   MAAISVLSTPWVSTGAIAVRVPSASLVFSTGSRGYCSVSLNTVNNNSARSGLLHCSFLPS 60
           MAAISVLSTPWVSTGAIAVRVPSASLVFSTGSRGYCSVSLNTVNNNSARSGLLHCSFLPS
Sbjct: 1   MAAISVLSTPWVSTGAIAVRVPSASLVFSTGSRGYCSVSLNTVNNNSARSGLLHCSFLPS 60

Query: 61  SSLSCSSSFSGLSLGLDWSSKVGVGQGKGRGLVVRAGKAALCQTKRNRSRKSLARTHGFR 120
           SSLSCSSSFSGLSLGLDWSSKVGVGQGKGRGLVVRAGKAALCQTKRNRSRKSLARTHGFR
Sbjct: 61  SSLSCSSSFSGLSLGLDWSSKVGVGQGKGRGLVVRAGKAALCQTKRNRSRKSLARTHGFR 120

Query: 121 RRMRTTNGRAVLKRRRAKGRKVLCTKSNPSSGKRA 155
           RRMRTTNGRAVLKRRRAKGRKVLCTKSNPSSGKRA
Sbjct: 121 RRMRTTNGRAVLKRRRAKGRKVLCTKSNPSSGKRA 155

[Close]

BLAST of CsGy6G034840 vs. NCBI nr
Match: XP_008439748.1 (PREDICTED: 50S ribosomal protein L34, chloroplastic [Cucumis melo] >TYK13199.1 50S ribosomal protein L34 [Cucumis melo var. makuwa])

HSP 1 Score: 266 bits (679), Expect = 7.28e-89
Identity = 148/155 (95.48%), Postives = 149/155 (96.13%), Query Frame = 0


Query: 1   MAAISVLSTPWVSTGAIAVRVPSASLVFSTGSRGYCSVSLNTVNNNSARSGLLHCSFLPS 60
           MAAISVLS+PWVS GAIAVRVPSASLV STGSRG CSVSLNT NN SARSGLLHCSFLPS
Sbjct: 1   MAAISVLSSPWVSNGAIAVRVPSASLVISTGSRGSCSVSLNTANNTSARSGLLHCSFLPS 60

Query: 61  SSLSCSSSFSGLSLGLDWSSKVGVGQGKGRGLVVRAGKAALCQTKRNRSRKSLARTHGFR 120
           SSLSCSSSFSGLSLGLDWSSKVGVGQGKGR LVVRAGKAALCQTKRNRSRKSLARTHGFR
Sbjct: 61  SSLSCSSSFSGLSLGLDWSSKVGVGQGKGRSLVVRAGKAALCQTKRNRSRKSLARTHGFR 120

Query: 121 RRMRTTNGRAVLKRRRAKGRKVLCTKSNPSSGKRA 155
           RRMRTTNGRAVLKRRRAKGRKVLCTKSNPSSGKRA
Sbjct: 121 RRMRTTNGRAVLKRRRAKGRKVLCTKSNPSSGKRA 155

[Close]

BLAST of CsGy6G034840 vs. NCBI nr
Match: XP_038883793.1 (50S ribosomal protein L34, chloroplastic [Benincasa hispida])

HSP 1 Score: 260 bits (664), Expect = 1.41e-86
Identity = 145/155 (93.55%), Postives = 147/155 (94.84%), Query Frame = 0


Query: 1   MAAISVLSTPWVSTGAIAVRVPSASLVFSTGSRGYCSVSLNTVNNNSARSGLLHCSFLPS 60
           MAAISVLS+PWVSTGA AVRVPSASLV STG RG CSVSLNT NN SARSGLLHCSFL S
Sbjct: 1   MAAISVLSSPWVSTGATAVRVPSASLVISTGFRGCCSVSLNTANNTSARSGLLHCSFLSS 60

Query: 61  SSLSCSSSFSGLSLGLDWSSKVGVGQGKGRGLVVRAGKAALCQTKRNRSRKSLARTHGFR 120
           SSLSCSSSFSGLSLGLDWSSK+GVGQGKGR LVVRAGKAALCQTKRNRSRKSLARTHGFR
Sbjct: 61  SSLSCSSSFSGLSLGLDWSSKIGVGQGKGRSLVVRAGKAALCQTKRNRSRKSLARTHGFR 120

Query: 121 RRMRTTNGRAVLKRRRAKGRKVLCTKSNPSSGKRA 155
           RRMRTTNGRAVLKRRRAKGRKVLCTKSNPSSGKRA
Sbjct: 121 RRMRTTNGRAVLKRRRAKGRKVLCTKSNPSSGKRA 155

[Close]

BLAST of CsGy6G034840 vs. NCBI nr
Match: XP_022142342.1 (50S ribosomal protein L34, chloroplastic [Momordica charantia])

HSP 1 Score: 244 bits (624), Expect = 1.76e-80
Identity = 137/155 (88.39%), Postives = 143/155 (92.26%), Query Frame = 0


Query: 1   MAAISVLSTPWVSTGAIAVRVPSASLVFSTGSRGYCSVSLNTVNNNSARSGLLHCSFLPS 60
           MAAISVLSTPWV +GA+AVRVPSASLV STGSR  CSVSLNT NN SARSGLL CSFLPS
Sbjct: 1   MAAISVLSTPWVLSGAVAVRVPSASLVISTGSRSCCSVSLNTANNTSARSGLLRCSFLPS 60

Query: 61  SSLSCSSSFSGLSLGLDWSSKVGVGQGKGRGLVVRAGKAALCQTKRNRSRKSLARTHGFR 120
           SSLSCSSSFSG SLGLDW+S++ VGQGKGR LVVRAGKAALCQTKRNRSRKSLARTHGFR
Sbjct: 61  SSLSCSSSFSGFSLGLDWNSRIWVGQGKGRSLVVRAGKAALCQTKRNRSRKSLARTHGFR 120

Query: 121 RRMRTTNGRAVLKRRRAKGRKVLCTKSNPSSGKRA 155
           RRMRTT+GRAVLKRRRAKGRKVLCTKS PSSGK A
Sbjct: 121 RRMRTTSGRAVLKRRRAKGRKVLCTKSYPSSGKGA 155

[Close]

BLAST of CsGy6G034840 vs. NCBI nr
Match: KAA0052628.1 (50S ribosomal protein L34 [Cucumis melo var. makuwa])

HSP 1 Score: 229 bits (583), Expect = 1.82e-74
Identity = 132/155 (85.16%), Postives = 133/155 (85.81%), Query Frame = 0


Query: 1   MAAISVLSTPWVSTGAIAVRVPSASLVFSTGSRGYCSVSLNTVNNNSARSGLLHCSFLPS 60
           MAAISVLS+PWVS GAIAVRVPSASLV STGSRG CSVSLNT NN SARSGLLHC     
Sbjct: 1   MAAISVLSSPWVSNGAIAVRVPSASLVISTGSRGSCSVSLNTANNTSARSGLLHC----- 60

Query: 61  SSLSCSSSFSGLSLGLDWSSKVGVGQGKGRGLVVRAGKAALCQTKRNRSRKSLARTHGFR 120
                      LSLGLDWSSKVGVGQGKGR LVVRAGKAALCQTKRNRSRKSLARTHGFR
Sbjct: 61  -----------LSLGLDWSSKVGVGQGKGRSLVVRAGKAALCQTKRNRSRKSLARTHGFR 120

Query: 121 RRMRTTNGRAVLKRRRAKGRKVLCTKSNPSSGKRA 155
           RRMRTTNGRAVLKRRRAKGRKVLCTKSNPSSGKRA
Sbjct: 121 RRMRTTNGRAVLKRRRAKGRKVLCTKSNPSSGKRA 139

[Close]

BLAST of CsGy6G034840 vs. ExPASy TrEMBL
Match: A0A0A0KI92 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G519510 PE=3 SV=1)

HSP 1 Score: 281 bits (719), Expect = 2.81e-95
Identity = 155/155 (100.00%), Postives = 155/155 (100.00%), Query Frame = 0


Query: 1   MAAISVLSTPWVSTGAIAVRVPSASLVFSTGSRGYCSVSLNTVNNNSARSGLLHCSFLPS 60
           MAAISVLSTPWVSTGAIAVRVPSASLVFSTGSRGYCSVSLNTVNNNSARSGLLHCSFLPS
Sbjct: 1   MAAISVLSTPWVSTGAIAVRVPSASLVFSTGSRGYCSVSLNTVNNNSARSGLLHCSFLPS 60

Query: 61  SSLSCSSSFSGLSLGLDWSSKVGVGQGKGRGLVVRAGKAALCQTKRNRSRKSLARTHGFR 120
           SSLSCSSSFSGLSLGLDWSSKVGVGQGKGRGLVVRAGKAALCQTKRNRSRKSLARTHGFR
Sbjct: 61  SSLSCSSSFSGLSLGLDWSSKVGVGQGKGRGLVVRAGKAALCQTKRNRSRKSLARTHGFR 120

Query: 121 RRMRTTNGRAVLKRRRAKGRKVLCTKSNPSSGKRA 155
           RRMRTTNGRAVLKRRRAKGRKVLCTKSNPSSGKRA
Sbjct: 121 RRMRTTNGRAVLKRRRAKGRKVLCTKSNPSSGKRA 155

[Close]

BLAST of CsGy6G034840 vs. ExPASy TrEMBL
Match: A0A5D3CSJ7 (50S ribosomal protein L34 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold255G008120 PE=3 SV=1)

HSP 1 Score: 266 bits (679), Expect = 3.53e-89
Identity = 148/155 (95.48%), Postives = 149/155 (96.13%), Query Frame = 0


Query: 1   MAAISVLSTPWVSTGAIAVRVPSASLVFSTGSRGYCSVSLNTVNNNSARSGLLHCSFLPS 60
           MAAISVLS+PWVS GAIAVRVPSASLV STGSRG CSVSLNT NN SARSGLLHCSFLPS
Sbjct: 1   MAAISVLSSPWVSNGAIAVRVPSASLVISTGSRGSCSVSLNTANNTSARSGLLHCSFLPS 60

Query: 61  SSLSCSSSFSGLSLGLDWSSKVGVGQGKGRGLVVRAGKAALCQTKRNRSRKSLARTHGFR 120
           SSLSCSSSFSGLSLGLDWSSKVGVGQGKGR LVVRAGKAALCQTKRNRSRKSLARTHGFR
Sbjct: 61  SSLSCSSSFSGLSLGLDWSSKVGVGQGKGRSLVVRAGKAALCQTKRNRSRKSLARTHGFR 120

Query: 121 RRMRTTNGRAVLKRRRAKGRKVLCTKSNPSSGKRA 155
           RRMRTTNGRAVLKRRRAKGRKVLCTKSNPSSGKRA
Sbjct: 121 RRMRTTNGRAVLKRRRAKGRKVLCTKSNPSSGKRA 155

[Close]

BLAST of CsGy6G034840 vs. ExPASy TrEMBL
Match: A0A1S3AZG6 (50S ribosomal protein L34, chloroplastic OS=Cucumis melo OX=3656 GN=LOC103484452 PE=3 SV=1)

HSP 1 Score: 266 bits (679), Expect = 3.53e-89
Identity = 148/155 (95.48%), Postives = 149/155 (96.13%), Query Frame = 0


Query: 1   MAAISVLSTPWVSTGAIAVRVPSASLVFSTGSRGYCSVSLNTVNNNSARSGLLHCSFLPS 60
           MAAISVLS+PWVS GAIAVRVPSASLV STGSRG CSVSLNT NN SARSGLLHCSFLPS
Sbjct: 1   MAAISVLSSPWVSNGAIAVRVPSASLVISTGSRGSCSVSLNTANNTSARSGLLHCSFLPS 60

Query: 61  SSLSCSSSFSGLSLGLDWSSKVGVGQGKGRGLVVRAGKAALCQTKRNRSRKSLARTHGFR 120
           SSLSCSSSFSGLSLGLDWSSKVGVGQGKGR LVVRAGKAALCQTKRNRSRKSLARTHGFR
Sbjct: 61  SSLSCSSSFSGLSLGLDWSSKVGVGQGKGRSLVVRAGKAALCQTKRNRSRKSLARTHGFR 120

Query: 121 RRMRTTNGRAVLKRRRAKGRKVLCTKSNPSSGKRA 155
           RRMRTTNGRAVLKRRRAKGRKVLCTKSNPSSGKRA
Sbjct: 121 RRMRTTNGRAVLKRRRAKGRKVLCTKSNPSSGKRA 155

[Close]

BLAST of CsGy6G034840 vs. ExPASy TrEMBL
Match: A0A6J1CMH5 (50S ribosomal protein L34, chloroplastic OS=Momordica charantia OX=3673 GN=LOC111012484 PE=3 SV=1)

HSP 1 Score: 244 bits (624), Expect = 8.50e-81
Identity = 137/155 (88.39%), Postives = 143/155 (92.26%), Query Frame = 0


Query: 1   MAAISVLSTPWVSTGAIAVRVPSASLVFSTGSRGYCSVSLNTVNNNSARSGLLHCSFLPS 60
           MAAISVLSTPWV +GA+AVRVPSASLV STGSR  CSVSLNT NN SARSGLL CSFLPS
Sbjct: 1   MAAISVLSTPWVLSGAVAVRVPSASLVISTGSRSCCSVSLNTANNTSARSGLLRCSFLPS 60

Query: 61  SSLSCSSSFSGLSLGLDWSSKVGVGQGKGRGLVVRAGKAALCQTKRNRSRKSLARTHGFR 120
           SSLSCSSSFSG SLGLDW+S++ VGQGKGR LVVRAGKAALCQTKRNRSRKSLARTHGFR
Sbjct: 61  SSLSCSSSFSGFSLGLDWNSRIWVGQGKGRSLVVRAGKAALCQTKRNRSRKSLARTHGFR 120

Query: 121 RRMRTTNGRAVLKRRRAKGRKVLCTKSNPSSGKRA 155
           RRMRTT+GRAVLKRRRAKGRKVLCTKS PSSGK A
Sbjct: 121 RRMRTTSGRAVLKRRRAKGRKVLCTKSYPSSGKGA 155

[Close]

BLAST of CsGy6G034840 vs. ExPASy TrEMBL
Match: A0A5A7UBQ8 (50S ribosomal protein L34 OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold120G002370 PE=3 SV=1)

HSP 1 Score: 229 bits (583), Expect = 8.80e-75
Identity = 132/155 (85.16%), Postives = 133/155 (85.81%), Query Frame = 0


Query: 1   MAAISVLSTPWVSTGAIAVRVPSASLVFSTGSRGYCSVSLNTVNNNSARSGLLHCSFLPS 60
           MAAISVLS+PWVS GAIAVRVPSASLV STGSRG CSVSLNT NN SARSGLLHC     
Sbjct: 1   MAAISVLSSPWVSNGAIAVRVPSASLVISTGSRGSCSVSLNTANNTSARSGLLHC----- 60

Query: 61  SSLSCSSSFSGLSLGLDWSSKVGVGQGKGRGLVVRAGKAALCQTKRNRSRKSLARTHGFR 120
                      LSLGLDWSSKVGVGQGKGR LVVRAGKAALCQTKRNRSRKSLARTHGFR
Sbjct: 61  -----------LSLGLDWSSKVGVGQGKGRSLVVRAGKAALCQTKRNRSRKSLARTHGFR 120

Query: 121 RRMRTTNGRAVLKRRRAKGRKVLCTKSNPSSGKRA 155
           RRMRTTNGRAVLKRRRAKGRKVLCTKSNPSSGKRA
Sbjct: 121 RRMRTTNGRAVLKRRRAKGRKVLCTKSNPSSGKRA 139

[Close]

BLAST of CsGy6G034840 vs. TAIR 10
Match: AT1G29070.1 (Ribosomal protein L34 )

HSP 1 Score: 139.4 bits (350), Expect = 2.4e-33
Identity = 101/155 (65.16%), Postives = 112/155 (72.26%), Query Frame = 0


Query: 2   AAISVLSTPWVSTGAIAVRVPSASLVFSTGSRGYCSVSLNTVNNNSARSGLLHCSFLPSS 61
           +A S L  P  S G I   VPSASL   TG R   S SL     +SA S LLHCSFL SS
Sbjct: 11  SASSRLWNPAASNGKIC--VPSASLSLRTGCR-RSSSSL----TSSASSQLLHCSFL-SS 70

Query: 62  SLSCSSSFSGLSLGLDWSSKV-GVGQGKGRGLVVRAGKAALCQTKRNRSRKSLARTHGFR 121
            +S +S FSGLS+  D SS+  G+   + RGLVVRAGKAALCQTKR+RSRKSLARTHGFR
Sbjct: 71  PVSLASPFSGLSIAFDLSSQTSGLNGQRRRGLVVRAGKAALCQTKRSRSRKSLARTHGFR 130

Query: 122 RRMRTTNGRAVLKRRRAKGRKVLCTKSNPSSGKRA 156
           RRMRTT+GRA +KRRRAKGR  LC KSNPSSGKRA
Sbjct: 131 RRMRTTSGRATIKRRRAKGRWNLCPKSNPSSGKRA 157

The following BLAST results are available for this feature:

BLAST of CsGy6G034840 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
P82244	9.2e-38	67.95	50S ribosomal protein L34, chloroplastic OS=Spinacia oleracea OX=3562 GN=RPL34 P...	[more]
Q9LP37	3.4e-32	65.16	50S ribosomal protein L34, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=RPL3...	[more]
Q04CX6	8.7e-04	70.59	50S ribosomal protein L34 OS=Oenococcus oeni (strain ATCC BAA-331 / PSU-1) OX=20...	[more]
Q48BE9	8.7e-04	83.33	50S ribosomal protein L34 OS=Pseudomonas savastanoi pv. phaseolicola (strain 144...	[more]
Q1I2H1	8.7e-04	83.33	50S ribosomal protein L34 OS=Pseudomonas entomophila (strain L48) OX=384676 GN=r...	[more]

BLAST of CsGy6G034840 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_004134668.1	5.81e-95	100.00	50S ribosomal protein L34, chloroplastic [Cucumis sativus] >KGN49298.1 hypotheti...	[more]
XP_008439748.1	7.28e-89	95.48	PREDICTED: 50S ribosomal protein L34, chloroplastic [Cucumis melo] >TYK13199.1 5...	[more]
XP_038883793.1	1.41e-86	93.55	50S ribosomal protein L34, chloroplastic [Benincasa hispida]	[more]
XP_022142342.1	1.76e-80	88.39	50S ribosomal protein L34, chloroplastic [Momordica charantia]	[more]
KAA0052628.1	1.82e-74	85.16	50S ribosomal protein L34 [Cucumis melo var. makuwa]	[more]

BLAST of CsGy6G034840 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0KI92	2.81e-95	100.00	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G519510 PE=3 SV=1	[more]
A0A5D3CSJ7	3.53e-89	95.48	50S ribosomal protein L34 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffo...	[more]
A0A1S3AZG6	3.53e-89	95.48	50S ribosomal protein L34, chloroplastic OS=Cucumis melo OX=3656 GN=LOC103484452...	[more]
A0A6J1CMH5	8.50e-81	88.39	50S ribosomal protein L34, chloroplastic OS=Momordica charantia OX=3673 GN=LOC11...	[more]
A0A5A7UBQ8	8.80e-75	85.16	50S ribosomal protein L34 OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffo...	[more]

BLAST of CsGy6G034840 vs. TAIR 10


Match Name	E-value	Identity	Description
AT1G29070.1	2.4e-33	65.16	Ribosomal protein L34	[more]

InterPro

Analysis Name: InterPro Annotations of Cucumber (Gy14) v2.1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	GENE3D	1.10.287.3980		coord: 97..155 e-value: 2.0E-26 score: 93.4
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 136..155
None	No IPR available	PANTHER	PTHR14503:SF9	BNAC06G17900D PROTEIN	coord: 13..154
IPR000271	Ribosomal protein L34	PFAM	PF00468	Ribosomal_L34	coord: 109..144 e-value: 2.1E-12 score: 46.8
IPR000271	Ribosomal protein L34	TIGRFAM	TIGR01030	TIGR01030	coord: 110..143 e-value: 3.9E-11 score: 41.0
IPR000271	Ribosomal protein L34	PANTHER	PTHR14503	MITOCHONDRIAL RIBOSOMAL PROTEIN 34 FAMILY MEMBER	coord: 13..154
IPR000271	Ribosomal protein L34	HAMAP	MF_00391	Ribosomal_L34	coord: 97..145 score: 12.617811

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CsGy6G034840.1	CsGy6G034840.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006412	translation
cellular_component	GO:0005762	mitochondrial large ribosomal subunit
cellular_component	GO:0005840	ribosome
molecular_function	GO:0003735	structural constituent of ribosome