CsGy6G034080 (gene) Cucumber (Gy14) v2.1

Overview


Name	CsGy6G034080
Type	gene
Organism	Cucumis sativus L. var. sativus cv. Gy14 (Cucumber (Gy14) v2.1)
Description	RNA polymerase II transcription factor B subunit 2
Location	Gy14Chr6: 30487644 .. 30497183 (-)
RNA-Seq Expression	CsGy6G034080
Synteny	CsGy6G034080

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

TTTTAAGTTATTAGCAAGTATTTTAGTTATTATTATTTTTTTAAATCTAGCAACACGTCTTTAGTTTGAAGTTGCAGATCTGTCCAAGTCGCCGCTGCCGTCCGATCACCTTTCAGCAGGTGTTGCCCGTTGCCGCGCGAGGTTCCAAATTTTATACTTTAGGGTTTTCATTTTTACAAAGGGGTAATTGGACAATTCATATATCCATTTGTCTCAAAGGAAAAAGAAAGTTTAAATTGAAAGCTCATCTAAAATGGCAATTTCCCGACCCAATAGCTTCTTTTATAATCAAGAAGAATTGGACATTCAACTACGTGTCGTTCTTCGTCTTCGGTCTTCCGAATGAGCAAGCAGTGTCAATCTACTAAGGTTAACTTTGAGTTAGTTGATAACTGATTGATTTAAGAGGATCTCACCATTTGCTATAAGTCTCACTCTCGACCTGGAACCTGCAATTTTTTTAATTCGTGATTCTGTGCCTAAAGGACTAGCAAAGCTAATCCAAAATGCCTCAAGTAAAGATCATAGCGAAGAATTTTATGGACATGGTGGCCTCCTTGCCCGCCATGAAGCTCGATCAACTCTATGAGAATGCATTCATCTGCGAAGCCATTCTCAGGTCCTTGCTTTCCATTCTTAAATGCTTTAATTGGTTGGGGTCGTATTTATAATTGAAACCATTGAGCTTGCTTGTTCGTAATACGATGTCATTGAAACTGTTTTTTTTTTAAAAAAAAAAAAAATTGATTGAGGTGTTTTATTTATTTATTATTTTTTAATTAGTTGTTTTTTTCATTTTTCCTTGGCCAAAGTTAGGTATTTGCAAATGAATTTAACTTAATAGTAGCTAGTCAATCATAGTTTTGGAGGTTATAATTTACAAGAGTGCCGATAATTTTTTTGTAATCAGGTCACTTCCGCCACTGGCTAAGAAGTTTGTTTTACAAATGTTATACATTGATGGTCCAGTTTCAGCCAAGTCCATGGAGGAGTGGGTGCTTCCAGATGGAGTCTCAAAGTATAAGGTTGCTGTTGATCGATTGATTCAATTGAGAGTATTTATTGAGACTGCAGATAGGTGCTATTCTCTTCCCACATTTTCTTAAGAATTTGATACTTTTTCACAATTCTTCAAAAATGCATTCTTAGTTAGATAAGTCCAAGAAAGCTGTCATTCAAGAGTTCAAGAGTAAGGCTACGTTTGTGGAGTGTTATTTTGTTATCATTTTTATCTTCATCTTCTTTGTGGATGTTTCTTTCCAAGAGTTGATAGATTGCCTTCGTGTTCATAATTCAAATTACGATATCATGATATCATCAGAATTGAGAGGTTCCTGCCAGGAGAACTTTAATTATGAGCTTGTGTAAATGCTTTTGCGTTACTTCTGTTTTGATTTCACTTAAATCGTTTGTAATTCTATCAGCAGTTTTGCATTGTTTGTAGCCCTCAACCCATTCCTGTATTGTAATCTTTTCTGTGAATCCCTATTTTATTTATAGGAAAAGAGAAACAACCTACCGGCTAAATCCAACTTTCCAAGCAAACCTCCAAAAGCTTTTAATACATGGGTAAGTATTCTCTCAACTTTGCTCAATGAATGCATTTCTAAACCAGATATGCTAGGATGGATACATGATTTGTCTCATTTCCCTTCTACCCACCACAGACGTTCTGATGCATGAATCTTTCTTAATAAATGCACATTTTCTTTTACTTGCTCCCTTATTCACATTCATTAAGTTCAAGTAGATGATTACTTATTTTCTTTAATAAGAAGCTGATCCTGGAGTTTAGACTCCATGATTTTAACATTTCAAAGTGATTTACTCTTGGTTTAGAAAATGACAATGAATTTGGGATCTTGCAGTGAAGTTCTAGCCAGAGAACCTATGCCTTCTAATATAACCGTGAGGCTTCCAAGTTTGGAAGATCTTGAGGCTTATGCTCTGGATCAGTGGGAGGTTGGACAGTCATCAAAATGATTTTAATAATCTGTTTTTTAGTTGCATCTTTTCTAGTTTAGTCTTTGGCTAGTATTGATTCCATCCTCTTAGACTCAATCTAAGGCAACCATCTTCTAAGTTGATTACTGTCCAAGTTTTAACTGTGGATATTCTTTTGACCTGTTATTGTCTTAGTTCAGTGCTTCTTGCTGCAATTGATAAACTCGGGCCAAGCAGAGAAGCCATCAAATATTAGTTCTTCTGTGATGAAAGTTTTCCAGAAAGGCCTTTTAAGTCAGAGGTTAAAATCTTGTTCAATGTACTCTAGCTTTATGTATTGTGATGTATCTGATAAAATGTTATGTATGGTATTCTAGGGATAAAGAAGCTCCACGATTAACTGAGAGTGGTTTCCAGTTCTTGGTATGAATCACATGAACCATAGACTTTTTGAAATCCTCATTGATCTGACTCACCAGGGATTCTTGTGATATGTAAACTTCAGTTGATGGAAACAAATGCACAACTTTGGTATATCATCAGAGAATATATATCTAATGCTGAGGTTTGTGTTTTCCTTTTTTTATTGTCATAGCCTATTGCCTTTCTCCAAGGTGTATATATATATATATATTCTATTTCTGTCATTAGTTTTCTATTTGAATCTGAATAATGGATGCGACTACTGTAACTCATAATGAAAAGCAAATATTGTTAATTTTAAGACCCTTTCTTTAGTTTTACTGGACTGTATAATTTATTTATTTATTTTCTTCTTATAACTCGTACTCCTCTCTTGTAAATGCATGCTTAATCAATATGGTTCAGGAGCGAGGTGTGGATCCTGCAGATTTGATTTCTTTTCTGCTAGAGCTTAGTTTTCATGTGACAGGAGAGGTATCAATTCCTTGAATTTCTTTTTACATCTTTATCTTTTATTGTTGTTGTCTTCTTTTATCCCATCGTAGAACTCTCTTTTAAGTTCTGTTGCTTCACATCATTTTAATACTGAACTACTTTGATTGGTTCGGGAGTATATATATGTATATGTATATTTTAACACAGATTGGTTTTCTTTAGTTTGTTGCATTGTGCATCTATCCTAATTTACTTTTTCTTGTTTATGGCGAGGTTGAATTTTGTTGGAATTTTATCAATACTTTTTTTCATTTATACAATGTCTGTCATTCTTGTTTTACAAGTTACTGTGTTCTAGAAACTAAACAAAGGGGTTTAGTTCTGTTTCCCTCCATCATAAGGGTGAATAAGTGTATTAGTTATAAATTCCTCCCATTGACATTCACAAATAAGAATAGTAAATGCGTTCAGTTTGATCGTCTTACATAATCATCTTTCATTCTAAATTTATCCTTAAAATCTCTGCAGTTCCTTTCATCAACGTTTGCTGCATCGTGGTCAAGTTTCCATATTTCTTGTGCATGTGATGCACAAGGAGAGAAGAATCATATGGGTTTTCCTTTGAGAAAGCTTGACTTGTATTAATCCCCTTCCTAAGCAAAATGAAAAATCTAATTTTCTTTGGGTTTCCATACCTCCACTTCAGGTAACCTTAAACAAGTTACTACTCTATTGGTTAAGAACGTCAGTAATTTCAAGTCTAGAGTTAGTCCAAAGCCCATCTCAGTCTGTTAGGTTGCCATTTTGGACTGTGGTTCTATTTCAATCTTTTAGTTCCTTTAATTCCAGCAGGCAGCTAACTCTTCATTTTAAAAACTAGGCAATTGAATTCTGAAGAAAACTTGCTTTAGAGGAATATTATACTTTTATGGATTATGGAGGTTTGTCCGTTGCCAATTTTGAAGGAAAAAGCTCCTAATTCTTTTTGCACCTTACCACAAACTTCTAAGGACTGCTGCTTCTCATTTTTTTTATGGTGAACAAATAGATGTAAATCAAATTAGACGCGAGTGCTAAATTTCTCTCCTTCAGATTGCCTTCTCCAATTCCACGCTCTTATGGTGGTTAGACACCTTCCTCCAATCAGCTACATAGCTGGCATTGTCAATACTCTCTCTGGCCCATAGGAGGTTTCTCAACATACTCTCTAAAAGCTTAGCCTTTTGGATTTTCAATAAATACATCAAATAAATAGGCATACTCAACATTGTAAATTGCAATAAGGAGGTAAGCCTTTCCCCGTCAGACATAAAGGCACTTACGCGCATTTTTTCTTTGTGAAACCTCTGGAACTGATTTTGGTTCAATTTCCATAGCTCCAAGCGGAAATTAACCTTTTTACAAATTCTGCCCTTTGAAATTTCAGTAAGAAATAAAAAATAAAAAAGAAACAAACTAGGGATGCCATAATCCATTCAACCTTAAGACACATGCCCTAAATGTGTTCTACTTTCACCACAGGCAATTTTTGGATATCCCAGGGAACCTTTTGTACCCTGATTTTGAGTGGGCTAATCCCTCTCTTCCATCCCTTAATCAATAACAGATGCACATTAAACCTCTGATAACTATAGTAAATACAGTATAATCCATATTACTAACTTTTATAAAAATGATCCCTATATTATTTACTATCCAATGACCAACATGTTTCTTCTTGGTCTGTAGGCTTATGATATTGATACACTGTCAGATGAACAGAGGTATGCTATCAAGGACCTTGCTGATCTGGGACTAGTTAAGCTTCAGCAGGTTTTCGGCTAGCCTCTGCTGCTTTCTAAATCGAACATGACCTTTGCACAAAGTTTTACTTTATTTTAACTTCACCTTTTTCTTTTTCTGTTGTTTCTTTCGTTGTTGATTTGTCCAGGGTAGAAAAGAGAGTTGGTTCATACCTACTAAATTAGCCACAAATCTTTCAATGAGTTTGGCAGATTCCTCTTCGAGGAAACTGGTGAGTGTTTCTGAATGCAAATTATATTTAAATTTGGTATATTTCTATTCAGTTTCATTTTCTTTATGCTTACCAAGTTTTTAGGAGGTGTTTGGCTCGCGAAGTTGGAGTTAAGGGAGTGTTTGTGCCCAAGGAAAACGTGGATCCCACAAACTAAAAAACCACCAATTTCATGCATAATTAACGTCTTATATTACGAGCCCCACGACTTTACAACTCATCAGATTTCACAACTCCACTCTTGGCCTCAAACACTCCCTTAGTGTTTTGCGTGTTTTCGATGATTGCTTTTCCATAACTATTTTTTTATTTTTACACTCTGCTATATATCTGCTTATCGTTACTTATGTAAATTTTATTTGATAGAACCTTCTTTCTGCTATTAAATAATTCGATTGATTGAATTTCTTTTTTTTTTTTCGGGGGGGGGGGGGGGGGGGGGGGGGCTGATTCCCAGTTTGGAGGCTCTATGAAGTTTTTTGCTCATCCTAATTTTCTTTCTGTTCTATACCAGGGATTTGTTGTTGTGGAGACAAATTTCAGGATGTATGCTTATTCTACTTCCAAACTACATTGTGAAATATTACGTCTTTTTTCAAGGTATATGCCATCATTTAGTGTTAATTACATTATATAACCAGTACTTTTGTAAGGAAAATTTATAGACGCCACCTACACAATATTTGTATCTTATAAGTCACTTTGACAATTTTATTTATTTATTTTTGGAAAACAACAACTTTCATTGAGAAAAAAAGGAATATAAGGGCATACAAAAAAAGCAAGCCCACAAAAAGGGATCCTCTATCCACAAAAAGTGACCCCAGTTATGTGTAACAATGCCTATAGAAAAGTTACAAAAGGTCGTTGAAATTGAAGTCCACAAAATAAATGCAAGCGAACGAGGGACTAAATCTCACTAGTGTCCCTTTCTGAAAAGCCCTAATATTCCGCTCACTCCATACAAAACCTATAAGAACAAACCATAAAAAGTAACCTTTCTCCCTGTGAGACGAATTGAGGAGGAACTCCTCGATCATAACACGAGCACTTGTGAGGGAGCAAGATACCAAACGTTGGAAAGAATAAGGCCCAAACAGAACTTGCAAACTCACGAAGTGCAAGAATATGGTCTAGATATTCTAGTGCATTTTGACAAAGAATGCACTAGAAAGGGCCAACAAGCAAGGGCAACGTCCTTACAAGCTGATCTATCATGTTAGCACGACCATAAACTTGCCAAGTAAAGAACCTCATTTTACTAGGGATCTTAATTCTCTAAAGAACTGAAAAAATCGACTCTCCTAAGGGAGAAGAATCGACCAAACTTCAAAAAAAGACTTCCAAAACCCCTCCAAAGAATTGGGTATCCAAACCATTACACCCCTTCTCCCAAGCCTCAAGGAGTGACCCTTGAGCAGAGAAAGAAGACTGACCATGTTTGTTGTTTCCCTATTAGAAAGAGAGATCAGGTGGAACCTGAAAATAAAAGAACCAGAGCTCCCAGATCCACATGAGGGTTAAGTAGTTGTTTCGTAAGAATAGTCGAGGGATACAAGCCGGCTCAAATTTCAAAGGATTAAGAAAGCTTTACAAAATTGACTGGCTACTGGTTACATTTAATATTTACATCATAAGCTAAATGTATTTGAAATCCCACTGCTGATAGGCCCCTCGTGAAACTTCACATATGTTGGGAGGAAGAAAGAGGGGCAAGCTGAGGGATAACTTAGTCATTAGCATTGCTTCTTGAGAGTGCAAGCAACTAGTGATAATCTGTTAATGATAATTCAACGGTTATAATGCTATACTTGTGTAAATTAGAAATGCTGCCTTTTTTTTTTATCAAAATATAATTCTCACTTTTTGAGTCAAATGTTTACCACGGATTCGTTTGAGTTTGATTGTAATAGGAATGCTATTGGGAAGTAGTTGGAGTAAGGGCATATTAGCAATTATTTAAGAAGTTTATTGGGAAAGTTTGGTTATAAATAGTGAATAGAGAAGAAGGAAAATAAACAATATTCTGTAGCTCGGGAATATTTTTAAGATTGGGAGGGTCTAAGTTGGTTTATCTTGCTATTCCATTATTATTTTTCATTATATTTGGGTTCAAATTGTTAAAGGTCCATTTTTTTAATTGCATTCTCACAGAAGCACTTGTAATAGTTGATTAAAAAGGAAAAATAATTTTAGTTCAACGTTCTACATTTTACTTACTGCTTGATGAATGCAGTTATTTCCCTTTCTGTTGAATTGAACCATATAATGCAGCAGTCTAAACACAGACGTCAACTTTCTATTTGGTTCAAGAATTACAAAATAAAACGAAGCTGTCCTTCTGCAGGATTGAGTATCAACTTCCAAATCTTATAGTTGGAGCAATAACGAAAGAAAGCTTGTATAATGCTTTTAAGAATGGGATTACAGCAGAGCAGGCAAGTTTTCTGCTTGTTCACCCTGCCTCATGTTACTCTTAGTCTTGTGAAGTAAGGGTACCACTATATTATGTTCAAATTGCCAATGGAATGCAGTAGACCAGTTATTCTTCGCGCAACATTTTGCATTGGTAGCACTGTTAATTCTTGCCAGTGGTGGAATGCTTGGAGAATTCTCCCTAATTCTAAATATTTATTCCTAGCATGAAAAATATTGGGGCTTTGCCCAAGGGAGTTATTCCTAGTTAGCAGGGATCAAGTGCCAAACCCATTGTTACCGGTCATTAACAAGGGAACTTCGACTAGCATTAGCTCCTGATCCACAAGAAACGAAATTTCTATTTTCCTTCTGTGCGTCAGTCTAAACTTTATGTAAATGTAAACTCTGGATATTTTTTTAGCTAAAAGTGATCAACATACATATTTAGTCTTTGAGATTTGGTAAAAGGTTCTTGGGATCGTTGTCCAACGGAACATGACGTAGTTGTTAAGTTGCTAACAGTGTGTTGATAGAGTGAGCATCTATATTAATTAGACATTATTTTTATTTTTAAGGTAGCGTATTATCTGTCTCTTCTCCTTCTTTGTCACCTCCGACAACCTTTACCTTCATCATCACCACCACCTTCCACCGTCACCATTGTCATCTTGGTCAAAGGGGTTCTAAAGACGTTGGATTGCCATCAAAACATATAAAGGAGAAGCTGAGAATTTTTCTTTTTTGGGGGGAGGGGGGAGTGGGGAGGGACCCAATACTAAATTGAGCAGGGTGGCGGATAAGTATTCTCCAAATTCTTCTCACCGAAAATTCTCTGTAGGGTCATGAGGGAGGAGGATGGCGACAATGCTCGCCAAAAGGTGAAGAAGGAGAAGAGATGAGAGATAACAGGCTACCTCACAAATTAATATTAAATTAATATAATTGACTACTCATCCCTACACAGATACTTAATTACATTGGATACATTACTGGAGTTTTCTATGCTGGTTTTCTCATTTCAAATTGCTTGACATCTGACTATTGGTATACAGATAGTTACTTTTCTACAACAGAATGCACATCCTCGTGTTGCAGAGAGAATACCATCAGTCCCTGAAAATGTCACAGATCAGGTTAGGGTTGCTTCGGTAAATTCTTTATATTTGTCAAACCAATGGTTTCACCTATCATGGAAACCAAAAATGTTTACACGTGTTCTCATCGTACAGTTTTATCTAATCTTTGTTCTGTTCCTGATTTTTTCCATTTGCTCTTTATTCCATGCCAGATTAGGTTATGGGAATCAGATCTTAATAGGGTTGATATTACTCCCGCACATTTTTACGACGAATTTCCTTCCAGGGTACGGATTTCAAATGTTGCTTCTTTTAACTTTGAAGATTACTTGTACATTCACCTGAAAAACCCACTTGAGAAGGAATTTCTTTTGCATTCCAGGAAGTTTTCGAGGCTGCTTGCGACTATGCACGGGAATGGAACGGGTTGCTATGGGAGGATTCAAAAAACTTGCGACTGGTAGTGAAGGCAGACATACACACACATATGCGAGAACATCTTCGGCGTCAAAAGTAGATTGCGAAGACATGATTCAATACGGCTGCCAAGAAATGTTTATAACCATGGACTATGGCACTTCCGTTTTTGTTGCTTCAGTGGCATGGCCTAAAAGATAAGTCTTTAATGACGGTGAAGAACGCAGTGAAAGTTTTTGGCGGGATTGGGAGGAAAGAAAATTGTGCCGATGACAATGGTTTTGTTACTGTGTACATTTCGAAGTCAGTTTCCCTTGTTCGTAGATTATATGATACGCAAGTTTTGTTATGTTGATTTCCCTTTGACAATCAACATTTTGGTATAGTTGGCATACAAATGTGCTACTAATCAAGAGATTTGTTATCAAAATTCTTTAATCTTATTGTATCACTGCTTGATAAAAAAAAAAAGAAATTATGGGTACTACTTCGTTCTGGCACTTACGTCTGGGACTATAAAAAAACATGGTCATGTGCTTCAAAAAATAATGAAATGTGTAATGTCAAAGATCATGGAGGGGAACTTTTAGTGGAAAATTTATGCATGTATAGAACTATTTGAACTATAGAATAAGTATTTCATACAGTTAAGTAACATGTTCAAGGCTCCAAAATTTGAATTTGGCGTTTAGCAGTTTTGTCATTTTCTCAACACATTCTTATCTCTAGTTTTAGGATACCTTATCCATGATTGGCATGAAATTGCTCGTTGAGTTACCAAAAACGGTAGATATACCTAAAAAAATGATAGGG

mRNA sequence

TTTTAAGTTATTAGCAAGTATTTTAGTTATTATTATTTTTTTAAATCTAGCAACACGTCTTTAGTTTGAAGTTGCAGATCTGTCCAAGTCGCCGCTGCCGTCCGATCACCTTTCAGCAGGTGTTGCCCGTTGCCGCGCGAGGTTCCAAATTTTATACTTTAGGGTTTTCATTTTTACAAAGGGGTAATTGGACAATTCATATATCCATTTGTCTCAAAGGAAAAAGAAAGTTTAAATTGAAAGCTCATCTAAAATGGCAATTTCCCGACCCAATAGCTTCTTTTATAATCAAGAAGAATTGGACATTCAACTACGTGTCGTTCTTCGTCTTCGGTCTTCCGAATGAGCAAGCAGTGTCAATCTACTAAGGTTAACTTTGAGTTAGTTGATAACTGATTGATTTAAGAGGATCTCACCATTTGCTATAAGTCTCACTCTCGACCTGGAACCTGCAATTTTTTTAATTCGTGATTCTGTGCCTAAAGGACTAGCAAAGCTAATCCAAAATGCCTCAAGTAAAGATCATAGCGAAGAATTTTATGGACATGGTGGCCTCCTTGCCCGCCATGAAGCTCGATCAACTCTATGAGAATGCATTCATCTGCGAAGCCATTCTCAGGTCACTTCCGCCACTGGCTAAGAAGTTTGTTTTACAAATGTTATACATTGATGGTCCAGTTTCAGCCAAGTCCATGGAGGAGTGGGTGCTTCCAGATGGAGTCTCAAAGTATAAGGTTGCTGTTGATCGATTGATTCAATTGAGAGTATTTATTGAGACTGCAGATAGGAAAAGAGAAACAACCTACCGGCTAAATCCAACTTTCCAAGCAAACCTCCAAAAGCTTTTAATACATGGTGAAGTTCTAGCCAGAGAACCTATGCCTTCTAATATAACCGTGAGGCTTCCAAGTTTGGAAGATCTTGAGGCTTATGCTCTGGATCAGTGGGAGTGCTTCTTGCTGCAATTGATAAACTCGGGCCAAGCAGAGAAGCCATCAAATATTAGTTCTTCTGTGATGAAAGTTTTCCAGAAAGGCCTTTTAAGTCAGAGGGATAAAGAAGCTCCACGATTAACTGAGAGTGGTTTCCAGTTCTTGTTGATGGAAACAAATGCACAACTTTGGTATATCATCAGAGAATATATATCTAATGCTGAGGAGCGAGGTGTGGATCCTGCAGATTTGATTTCTTTTCTGCTAGAGCTTAGTTTTCATGTGACAGGAGAGGCTTATGATATTGATACACTGTCAGATGAACAGAGGTATGCTATCAAGGACCTTGCTGATCTGGGACTAGTTAAGCTTCAGCAGGGTAGAAAAGAGAGTTGGTTCATACCTACTAAATTAGCCACAAATCTTTCAATGAGTTTGGCAGATTCCTCTTCGAGGAAACTGGGATTTGTTGTTGTGGAGACAAATTTCAGGATGTATGCTTATTCTACTTCCAAACTACATTGTGAAATATTACGTCTTTTTTCAAGGATTGAGTATCAACTTCCAAATCTTATAGTTGGAGCAATAACGAAAGAAAGCTTGTATAATGCTTTTAAGAATGGGATTACAGCAGAGCAGATAGTTACTTTTCTACAACAGAATGCACATCCTCGTGTTGCAGAGAGAATACCATCAGTCCCTGAAAATGTCACAGATCAGATTAGGTTATGGGAATCAGATCTTAATAGGGTTGATATTACTCCCGCACATTTTTACGACGAATTTCCTTCCAGGGAAGTTTTCGAGGCTGCTTGCGACTATGCACGGGAATGGAACGGGTTGCTATGGGAGGATTCAAAAAACTTGCGACTGGTAGTGAAGGCAGACATACACACACATATGCGAGAACATCTTCGGCGTCAAAAGTAGATTGCGAAGACATGATTCAATACGGCTGCCAAGAAATGTTTATAACCATGGACTATGGCACTTCCGTTTTTGTTGCTTCAGTGGCATGGCCTAAAAGATAAGTCTTTAATGACGGTGAAGAACGCAGTGAAAGTTTTTGGCGGGATTGGGAGGAAAGAAAATTGTGCCGATGACAATGGTTTTGTTACTGTGTACATTTCGAAGTCAGTTTCCCTTGTTCGTAGATTATATGATACGCAAGTTTTGTTATGTTGATTTCCCTTTGACAATCAACATTTTGGTATAGTTGGCATACAAATGTGCTACTAATCAAGAGATTTGTTATCAAAATTCTTTAATCTTATTGTATCACTGCTTGATAAAAAAAAAAAGAAATTATGGGTACTACTTCGTTCTGGCACTTACGTCTGGGACTATAAAAAAACATGGTCATGTGCTTCAAAAAATAATGAAATGTGTAATGTCAAAGATCATGGAGGGGAACTTTTAGTGGAAAATTTATGCATGTATAGAACTATTTGAACTATAGAATAAGTATTTCATACAGTTAAGTAACATGTTCAAGGCTCCAAAATTTGAATTTGGCGTTTAGCAGTTTTGTCATTTTCTCAACACATTCTTATCTCTAGTTTTAGGATACCTTATCCATGATTGGCATGAAATTGCTCGTTGAGTTACCAAAAACGGTAGATATACCTAAAAAAATGATAGGG

Coding sequence (CDS)

ATGCCTCAAGTAAAGATCATAGCGAAGAATTTTATGGACATGGTGGCCTCCTTGCCCGCCATGAAGCTCGATCAACTCTATGAGAATGCATTCATCTGCGAAGCCATTCTCAGGTCACTTCCGCCACTGGCTAAGAAGTTTGTTTTACAAATGTTATACATTGATGGTCCAGTTTCAGCCAAGTCCATGGAGGAGTGGGTGCTTCCAGATGGAGTCTCAAAGTATAAGGTTGCTGTTGATCGATTGATTCAATTGAGAGTATTTATTGAGACTGCAGATAGGAAAAGAGAAACAACCTACCGGCTAAATCCAACTTTCCAAGCAAACCTCCAAAAGCTTTTAATACATGGTGAAGTTCTAGCCAGAGAACCTATGCCTTCTAATATAACCGTGAGGCTTCCAAGTTTGGAAGATCTTGAGGCTTATGCTCTGGATCAGTGGGAGTGCTTCTTGCTGCAATTGATAAACTCGGGCCAAGCAGAGAAGCCATCAAATATTAGTTCTTCTGTGATGAAAGTTTTCCAGAAAGGCCTTTTAAGTCAGAGGGATAAAGAAGCTCCACGATTAACTGAGAGTGGTTTCCAGTTCTTGTTGATGGAAACAAATGCACAACTTTGGTATATCATCAGAGAATATATATCTAATGCTGAGGAGCGAGGTGTGGATCCTGCAGATTTGATTTCTTTTCTGCTAGAGCTTAGTTTTCATGTGACAGGAGAGGCTTATGATATTGATACACTGTCAGATGAACAGAGGTATGCTATCAAGGACCTTGCTGATCTGGGACTAGTTAAGCTTCAGCAGGGTAGAAAAGAGAGTTGGTTCATACCTACTAAATTAGCCACAAATCTTTCAATGAGTTTGGCAGATTCCTCTTCGAGGAAACTGGGATTTGTTGTTGTGGAGACAAATTTCAGGATGTATGCTTATTCTACTTCCAAACTACATTGTGAAATATTACGTCTTTTTTCAAGGATTGAGTATCAACTTCCAAATCTTATAGTTGGAGCAATAACGAAAGAAAGCTTGTATAATGCTTTTAAGAATGGGATTACAGCAGAGCAGATAGTTACTTTTCTACAACAGAATGCACATCCTCGTGTTGCAGAGAGAATACCATCAGTCCCTGAAAATGTCACAGATCAGATTAGGTTATGGGAATCAGATCTTAATAGGGTTGATATTACTCCCGCACATTTTTACGACGAATTTCCTTCCAGGGAAGTTTTCGAGGCTGCTTGCGACTATGCACGGGAATGGAACGGGTTGCTATGGGAGGATTCAAAAAACTTGCGACTGGTAGTGAAGGCAGACATACACACACATATGCGAGAACATCTTCGGCGTCAAAAGTAG

Protein sequence

MPQVKIIAKNFMDMVASLPAMKLDQLYENAFICEAILRSLPPLAKKFVLQMLYIDGPVSAKSMEEWVLPDGVSKYKVAVDRLIQLRVFIETADRKRETTYRLNPTFQANLQKLLIHGEVLAREPMPSNITVRLPSLEDLEAYALDQWECFLLQLINSGQAEKPSNISSSVMKVFQKGLLSQRDKEAPRLTESGFQFLLMETNAQLWYIIREYISNAEERGVDPADLISFLLELSFHVTGEAYDIDTLSDEQRYAIKDLADLGLVKLQQGRKESWFIPTKLATNLSMSLADSSSRKLGFVVVETNFRMYAYSTSKLHCEILRLFSRIEYQLPNLIVGAITKESLYNAFKNGITAEQIVTFLQQNAHPRVAERIPSVPENVTDQIRLWESDLNRVDITPAHFYDEFPSREVFEAACDYAREWNGLLWEDSKNLRLVVKADIHTHMREHLRRQK*

Homology

[Close]

BLAST of CsGy6G034080 vs. ExPASy Swiss-Prot
Match: Q680U9 (General transcription and DNA repair factor IIH subunit TFB2 OS=Arabidopsis thaliana OX=3702 GN=TFB2 PE=2 SV=1)

HSP 1 Score: 723.0 bits (1865), Expect = 2.1e-207
Identity = 352/450 (78.22%), Postives = 403/450 (89.56%), Query Frame = 0


Query: 1   MPQVKIIAKNFMDMVASLPAMKLDQLYENAFICEAILRSLPPLAKKFVLQMLYIDGPVSA 60
           MPQVKIIAKNFMDMVASLPA+KLD+LY N FICEAILRSLPPLAKK+VLQMLYID PV A
Sbjct: 1   MPQVKIIAKNFMDMVASLPAIKLDKLYNNVFICEAILRSLPPLAKKYVLQMLYIDVPVPA 60

Query: 61  KSMEEWVLPDGVSKYKVAVDRLIQLRVFIETADRKRETTYRLNPTFQANLQKLLIHGEVL 120
             MEEWVL DG SK++VA+DRLIQLR+F E +DRKR T+Y LNPTFQ NLQK +I G VL
Sbjct: 61  TMMEEWVLADGTSKHRVAIDRLIQLRIFSEISDRKRGTSYSLNPTFQNNLQKHIISGGVL 120

Query: 121 AREPMPSNITVRLPSLEDLEAYALDQWECFLLQLINSGQAEKPSNISSSVMKVFQKGLLS 180
            REPM S+  ++LPSL++LE YAL QWECFLLQLINSGQ EK + ISSS+MK+FQ+GLLS
Sbjct: 121 PREPMNSDNAIKLPSLQELETYALKQWECFLLQLINSGQGEKLTGISSSMMKIFQRGLLS 180

Query: 181 QRDKEAPRLTESGFQFLLMETNAQLWYIIREYISNAEERGVDPADLISFLLELSFHVTGE 240
           QRDK+ PRLTESGFQFLLM+TNAQLWYIIREYI NAEER VDPADLISFLLELSFHVTG+
Sbjct: 181 QRDKDGPRLTESGFQFLLMDTNAQLWYIIREYILNAEERDVDPADLISFLLELSFHVTGQ 240

Query: 241 AYDIDTLSDEQRYAIKDLADLGLVKLQQGRKESWFIPTKLATNLSMSLADSSSRKLGFVV 300
           AY+++TL++ Q   +KDLADLGLVKLQQGRK+SWFIPTKLATNLS+SLADSS+RK GFVV
Sbjct: 241 AYNLNTLTEVQNNTLKDLADLGLVKLQQGRKDSWFIPTKLATNLSVSLADSSARKEGFVV 300

Query: 301 VETNFRMYAYSTSKLHCEILRLFSRIEYQLPNLIVGAITKESLYNAFKNGITAEQIVTFL 360
           +ETNFRMYAYSTSKL CEILRLF+RIEYQLPNLI  AITKESLYNAF NGIT++QI+TFL
Sbjct: 301 METNFRMYAYSTSKLQCEILRLFARIEYQLPNLIACAITKESLYNAFDNGITSDQIITFL 360

Query: 361 QQNAHPRVAERIPSVPENVTDQIRLWESDLNRVDITPAHFYDEFPSREVFEAACDYAREW 420
           QQN+HPR A+R+PS+PENVTDQIRLWE+DL R+++T AHFYDEFPS++VFEAACD+AREW
Sbjct: 361 QQNSHPRCADRVPSIPENVTDQIRLWETDLQRIEMTQAHFYDEFPSKDVFEAACDFAREW 420

Query: 421 NGLLWEDSKNLRLVVKADIHTHMREHLRRQ 451
            GLLWEDSK +RLVVK+++H  MRE L  Q
Sbjct: 421 RGLLWEDSKRMRLVVKSEVHNQMREFLHTQ 450

[Close]

BLAST of CsGy6G034080 vs. ExPASy Swiss-Prot
Match: Q92759 (General transcription factor IIH subunit 4 OS=Homo sapiens OX=9606 GN=GTF2H4 PE=1 SV=1)

HSP 1 Score: 266.5 bits (680), Expect = 5.3e-70
Identity = 155/453 (34.22%), Postives = 257/453 (56.73%), Query Frame = 0


Query: 3   QVKIIAKNFMDMVASLPAMKLDQLYENAFICEAILRSLPPLAKKFVLQMLYIDGPVSAKS 62
           +V +  +N  + +  L    LD+LY +   C A+ R LP LAK +V++ML+++ P+   +
Sbjct: 11  RVHLQCRNLQEFLGGLSPGVLDRLYGHPATCLAVFRELPSLAKNWVMRMLFLEQPLPQAA 70

Query: 63  MEEWVLPDGVSKYKVAVDRLIQLRVFIETADRKRETTYRLNPTFQANLQ-KLLIHGEVLA 122
           +  WV  +     + +   L  LR++             LNP F+ NL+  LL  G+  +
Sbjct: 71  VALWVKKEFSKAQEESTGLLSGLRIWHTQLLPGGLQGLILNPIFRQNLRIALLGGGKAWS 130

Query: 123 REPMPSNITVRLPSLEDLEAYALDQWECFLLQLINSGQAEKPSNISSSVMKVFQKGLL-S 182
            +            +  L+ YA ++WE  L  ++ S  A    +++  +    Q GL+ S
Sbjct: 131 DDTSQLGPDKHARDVPSLDKYAEERWEVVLHFMVGSPSAAVSQDLAQLLS---QAGLMKS 190

Query: 183 QRDKEAPRLTESGFQFLLMETNAQLWYIIREYISNAEERGVDPADLISFLLELSFHVTGE 242
               E P +T +GFQFLL++T AQLWY + +Y+  A+ RG+D  +++SFL +LSF   G+
Sbjct: 191 TEPGEPPCITSAGFQFLLLDTPAQLWYFMLQYLQTAQSRGMDLVEILSFLFQLSFSTLGK 250

Query: 243 AYDIDTLSDEQRYAIKDLADLGLVKLQQGRKESWFIPTKLATNLS--MSLADSSSRKLGF 302
            Y ++ +SD     ++ L + GLV  Q+ RK   + PT+LA NLS  +S A  +  + GF
Sbjct: 251 DYSVEGMSDSLLNFLQHLREFGLV-FQRKRKSRRYYPTRLAINLSSGVSGAGGTVHQPGF 310

Query: 303 VVVETNFRMYAYSTSKLHCEILRLFSRIEYQLPNLIVGAITKESLYNAFKNGITAEQIVT 362
           +VVETN+R+YAY+ S+L   ++ LFS + Y+ PN++V  +T+ES+  A  +GITA+QI+ 
Sbjct: 311 IVVETNYRLYAYTESELQIALIALFSEMLYRFPNMVVAQVTRESVQQAIASGITAQQIIH 370

Query: 363 FLQQNAHPRVAERIPSVPENVTDQIRLWESDLNRVDITPAHFYDEFPSREVFEAACDYAR 422
           FL+  AHP + ++ P +P  +TDQIRLWE + +R+  T    Y++F S+  FE    +AR
Sbjct: 371 FLRTRAHPVMLKQTPVLPPTITDQIRLWELERDRLRFTEGVLYNQFLSQVDFELLLAHAR 430

Query: 423 EWNGLLWEDSKNLRLVVKADIHTHMREHLRRQK 452
           E   L++E+S    +VV    H+ ++   +RQK
Sbjct: 431 ELGVLVFENSAKRLMVVTPAGHSDVKRFWKRQK 459

[Close]

BLAST of CsGy6G034080 vs. ExPASy Swiss-Prot
Match: P60027 (General transcription factor IIH subunit 4 OS=Pan troglodytes OX=9598 GN=GTF2H4 PE=3 SV=1)

HSP 1 Score: 266.5 bits (680), Expect = 5.3e-70
Identity = 155/453 (34.22%), Postives = 257/453 (56.73%), Query Frame = 0


Query: 3   QVKIIAKNFMDMVASLPAMKLDQLYENAFICEAILRSLPPLAKKFVLQMLYIDGPVSAKS 62
           +V +  +N  + +  L    LD+LY +   C A+ R LP LAK +V++ML+++ P+   +
Sbjct: 11  RVHLQCRNLQEFLGGLSPGVLDRLYGHPATCLAVFRELPSLAKNWVMRMLFLEQPLPQAA 70

Query: 63  MEEWVLPDGVSKYKVAVDRLIQLRVFIETADRKRETTYRLNPTFQANLQ-KLLIHGEVLA 122
           +  WV  +     + +   L  LR++             LNP F+ NL+  LL  G+  +
Sbjct: 71  VALWVKKEFSKAQEESTGLLSGLRIWHTQLLPGGLQGLILNPIFRQNLRIALLGGGKAWS 130

Query: 123 REPMPSNITVRLPSLEDLEAYALDQWECFLLQLINSGQAEKPSNISSSVMKVFQKGLL-S 182
            +            +  L+ YA ++WE  L  ++ S  A    +++  +    Q GL+ S
Sbjct: 131 DDTSQLGPDKHARDVPSLDKYAEERWEVVLHFMVGSPSAAVSQDLAQLLS---QAGLMKS 190

Query: 183 QRDKEAPRLTESGFQFLLMETNAQLWYIIREYISNAEERGVDPADLISFLLELSFHVTGE 242
               E P +T +GFQFLL++T AQLWY + +Y+  A+ RG+D  +++SFL +LSF   G+
Sbjct: 191 TEPGEPPCITSAGFQFLLLDTPAQLWYFMLQYLQTAQSRGMDLVEILSFLFQLSFSTLGK 250

Query: 243 AYDIDTLSDEQRYAIKDLADLGLVKLQQGRKESWFIPTKLATNLS--MSLADSSSRKLGF 302
            Y ++ +SD     ++ L + GLV  Q+ RK   + PT+LA NLS  +S A  +  + GF
Sbjct: 251 DYSVEGMSDSLLNFLQHLREFGLV-FQRKRKSRRYYPTRLAINLSSGVSGAGGTVHQPGF 310

Query: 303 VVVETNFRMYAYSTSKLHCEILRLFSRIEYQLPNLIVGAITKESLYNAFKNGITAEQIVT 362
           +VVETN+R+YAY+ S+L   ++ LFS + Y+ PN++V  +T+ES+  A  +GITA+QI+ 
Sbjct: 311 IVVETNYRLYAYTESELQIALIALFSEMLYRFPNMVVAQVTRESVQQAIASGITAQQIIH 370

Query: 363 FLQQNAHPRVAERIPSVPENVTDQIRLWESDLNRVDITPAHFYDEFPSREVFEAACDYAR 422
           FL+  AHP + ++ P +P  +TDQIRLWE + +R+  T    Y++F S+  FE    +AR
Sbjct: 371 FLRTRAHPVMLKQTPVLPPTITDQIRLWELERDRLRFTEGVLYNQFLSQVDFELLLAHAR 430

Query: 423 EWNGLLWEDSKNLRLVVKADIHTHMREHLRRQK 452
           E   L++E+S    +VV    H+ ++   +RQK
Sbjct: 431 ELGVLVFENSAKRLMVVTPAGHSDVKRFWKRQK 459

[Close]

BLAST of CsGy6G034080 vs. ExPASy Swiss-Prot
Match: O70422 (General transcription factor IIH subunit 4 OS=Mus musculus OX=10090 GN=Gtf2h4 PE=1 SV=1)

HSP 1 Score: 265.4 bits (677), Expect = 1.2e-69
Identity = 154/447 (34.45%), Postives = 254/447 (56.82%), Query Frame = 0


Query: 9   KNFMDMVASLPAMKLDQLYENAFICEAILRSLPPLAKKFVLQMLYIDGPVSAKSMEEWVL 68
           +N  + +  L    LD+LY +   C A+ R LP LAK +V++ML+++ P+   ++  WV 
Sbjct: 18  RNLQEFLGGLSPGVLDRLYGHPATCLAVFRELPSLAKNWVMRMLFLEQPLPQAAVALWVK 77

Query: 69  PDGVSKYKVAVDRLIQLRVFIETADRKRETTYRLNPTFQANLQ-KLLIHGEVLAREPMPS 128
            +     + +   L  LR++             LNP F+ NL+  LL  G+  + +    
Sbjct: 78  KEFSKAQEESTGLLSGLRIWHTQLLPGGLQGLILNPVFRQNLRIALLGGGKAWSDDTSQL 137

Query: 129 NITVRLPSLEDLEAYALDQWECFLLQLINSGQAEKPSNISSSVMKVFQKGLL-SQRDKEA 188
                   +  L+ YA ++WE  L  ++ S  A    +++  +    Q GL+ S    E 
Sbjct: 138 GPDKHARDVPSLDKYAEERWEVVLHFMVGSPSAAVSQDLAQLLS---QAGLMKSTEPGEP 197

Query: 189 PRLTESGFQFLLMETNAQLWYIIREYISNAEERGVDPADLISFLLELSFHVTGEAYDIDT 248
           P +T +GFQFLL++T AQLWY + +Y+  A+ RG+D  +++SFL +LSF   G+ Y ++ 
Sbjct: 198 PCITSAGFQFLLLDTPAQLWYFMLQYLQTAQSRGMDLVEILSFLFQLSFSTLGKDYSVEG 257

Query: 249 LSDEQRYAIKDLADLGLVKLQQGRKESWFIPTKLATNLS--MSLADSSSRKLGFVVVETN 308
           +SD     ++ L + GLV  Q+ RK   + PT+LA NLS  +S A  +  + GF+VVETN
Sbjct: 258 MSDSLLNFLQHLREFGLV-FQRKRKSRRYYPTRLAINLSSGVSGAGGTVHQPGFIVVETN 317

Query: 309 FRMYAYSTSKLHCEILRLFSRIEYQLPNLIVGAITKESLYNAFKNGITAEQIVTFLQQNA 368
           +R+YAY+ S+L   ++ LFS + Y+ PN++V  +T+ES+  A  +GITA+QI+ FL+  A
Sbjct: 318 YRLYAYTESELQIALIALFSEMLYRFPNMVVAQVTRESVQQAIASGITAQQIIHFLRTRA 377

Query: 369 HPRVAERIPSVPENVTDQIRLWESDLNRVDITPAHFYDEFPSREVFEAACDYAREWNGLL 428
           HP + ++ P +P  +TDQIRLWE + +R+  T    Y++F S+  FE    +ARE   L+
Sbjct: 378 HPVMLKQNPVLPPTITDQIRLWELERDRLRFTEGVLYNQFLSQVDFELLLAHARELGVLV 437

Query: 429 WEDSKNLRLVVKADIHTHMREHLRRQK 452
           +E+S    +VV    H+ ++   +RQK
Sbjct: 438 FENSAKRLMVVTPAGHSDVKRFWKRQK 460

[Close]

BLAST of CsGy6G034080 vs. ExPASy Swiss-Prot
Match: Q6CLR2 (General transcription and DNA repair factor IIH subunit TFB2 OS=Kluyveromyces lactis (strain ATCC 8585 / CBS 2359 / DSM 70799 / NBRC 1267 / NRRL Y-1140 / WM37) OX=284590 GN=TFB2 PE=3 SV=1)

HSP 1 Score: 249.2 bits (635), Expect = 8.8e-65
Identity = 151/486 (31.07%), Postives = 249/486 (51.23%), Query Frame = 0


Query: 13  DMVASLPAMKLDQLYENAFICEAILRSLPPLAKKFVLQMLYIDGPVSAKSMEEWVLPDGV 72
           D +  LP     +LYE+   C AI R L P+AK F++ ML+ D  VS + +++WV PD  
Sbjct: 12  DYLEGLPEQVQSRLYESPATCLAIYRLLSPMAKFFIMSMLFQDHDVSLRDLDKWVKPDAK 71

Query: 73  SKYKVAVDRLIQLRVFIETADRKRETTYRLNPTFQANLQKLLIHGEVLAREPMPSNITVR 132
            + + ++  +  L + IE  + K+    RLNP F+ + + +L  GE+       ++    
Sbjct: 72  YQLQYSIKSMKSLNLIIE-GESKQPLLIRLNPIFKKSFKNVLTGGEINNSFGDVADDDTN 131

Query: 133 LPSLEDLEAYALDQWECFLLQLINSGQAEKPSNISSSVMKVFQ-KGLLSQRDKEAPRLTE 192
             S   L+ Y+ ++WE  L  ++ +     P      V+ + Q  GL+ + +    ++T 
Sbjct: 132 PVSTATLDQYSAEKWETILHYMVGTPNTNTP---GGKVLDLLQHSGLMEEAEYGELKITN 191

Query: 193 SGFQFLLMETNAQLWYIIREYISNAEERGVDPADLISFLLELSFHVTGEAYDIDTLSDEQ 252
            GFQFLL + NAQ+W ++ +Y+  AE   +DP D+++F+  L     G+AY  D LS+ Q
Sbjct: 192 QGFQFLLQDVNAQMWTLLLQYLKMAESLQMDPVDVLNFIFMLGALQLGKAYKCDQLSNTQ 251

Query: 253 RYAIKDLADLGLVKLQQGRKESWFIPTKLATNL--------SMSLA-DSSSRKL------ 312
           R  ++D+ D GL+  Q     + F PT+LAT L        S S+A DS   K       
Sbjct: 252 RTMLQDMRDYGLI-YQNQSDYAKFYPTRLATLLTSDTKAFRSASVALDSVLNKANETTAV 311

Query: 313 ---------------GFVVVETNFRMYAYSTSKLHCEILRLFSRIEYQLPNLIVGAITKE 372
                          G +++ETNF++Y+YS S L   IL LF  ++ +  N++ G +T+E
Sbjct: 312 EGDSGQDETTERTQDGALIIETNFKLYSYSNSPLQIAILSLFVHLKSRFANMVTGQLTRE 371

Query: 373 SLYNAFKNGITAEQIVTFLQQNAHPR------------------VAERIPSVPENVTDQI 432
           S+ NA  NGITAEQI+ +L+ +AHPR                  V E +  +P  V DQI
Sbjct: 372 SVRNALLNGITAEQIIAYLETHAHPRMRRLAEENLSKKLELDPTVKETLQVLPPTVVDQI 431

Query: 433 RLWESDLNRVDITPAHFYDEFPSREVFEAACDYAREWNGLLWEDSKNLRLVVKADIHTHM 450
           RLW+ +L+R+     + Y +F S + ++   DYA++   LLW++ K     V  + ++ +
Sbjct: 432 RLWQLELDRIISYDGYLYTDFESYQEYQTVADYAKDIGVLLWQNEKKKMFFVSTEGNSQV 491

[Close]

BLAST of CsGy6G034080 vs. NCBI nr
Match: XP_004134713.1 (general transcription and DNA repair factor IIH subunit TFB2 isoform X1 [Cucumis sativus] >KGN49219.1 hypothetical protein Csa_003950 [Cucumis sativus])

HSP 1 Score: 891 bits (2302), Expect = 0.0
Identity = 451/451 (100.00%), Postives = 451/451 (100.00%), Query Frame = 0


Query: 1   MPQVKIIAKNFMDMVASLPAMKLDQLYENAFICEAILRSLPPLAKKFVLQMLYIDGPVSA 60
           MPQVKIIAKNFMDMVASLPAMKLDQLYENAFICEAILRSLPPLAKKFVLQMLYIDGPVSA
Sbjct: 1   MPQVKIIAKNFMDMVASLPAMKLDQLYENAFICEAILRSLPPLAKKFVLQMLYIDGPVSA 60

Query: 61  KSMEEWVLPDGVSKYKVAVDRLIQLRVFIETADRKRETTYRLNPTFQANLQKLLIHGEVL 120
           KSMEEWVLPDGVSKYKVAVDRLIQLRVFIETADRKRETTYRLNPTFQANLQKLLIHGEVL
Sbjct: 61  KSMEEWVLPDGVSKYKVAVDRLIQLRVFIETADRKRETTYRLNPTFQANLQKLLIHGEVL 120

Query: 121 AREPMPSNITVRLPSLEDLEAYALDQWECFLLQLINSGQAEKPSNISSSVMKVFQKGLLS 180
           AREPMPSNITVRLPSLEDLEAYALDQWECFLLQLINSGQAEKPSNISSSVMKVFQKGLLS
Sbjct: 121 AREPMPSNITVRLPSLEDLEAYALDQWECFLLQLINSGQAEKPSNISSSVMKVFQKGLLS 180

Query: 181 QRDKEAPRLTESGFQFLLMETNAQLWYIIREYISNAEERGVDPADLISFLLELSFHVTGE 240
           QRDKEAPRLTESGFQFLLMETNAQLWYIIREYISNAEERGVDPADLISFLLELSFHVTGE
Sbjct: 181 QRDKEAPRLTESGFQFLLMETNAQLWYIIREYISNAEERGVDPADLISFLLELSFHVTGE 240

Query: 241 AYDIDTLSDEQRYAIKDLADLGLVKLQQGRKESWFIPTKLATNLSMSLADSSSRKLGFVV 300
           AYDIDTLSDEQRYAIKDLADLGLVKLQQGRKESWFIPTKLATNLSMSLADSSSRKLGFVV
Sbjct: 241 AYDIDTLSDEQRYAIKDLADLGLVKLQQGRKESWFIPTKLATNLSMSLADSSSRKLGFVV 300

Query: 301 VETNFRMYAYSTSKLHCEILRLFSRIEYQLPNLIVGAITKESLYNAFKNGITAEQIVTFL 360
           VETNFRMYAYSTSKLHCEILRLFSRIEYQLPNLIVGAITKESLYNAFKNGITAEQIVTFL
Sbjct: 301 VETNFRMYAYSTSKLHCEILRLFSRIEYQLPNLIVGAITKESLYNAFKNGITAEQIVTFL 360

Query: 361 QQNAHPRVAERIPSVPENVTDQIRLWESDLNRVDITPAHFYDEFPSREVFEAACDYAREW 420
           QQNAHPRVAERIPSVPENVTDQIRLWESDLNRVDITPAHFYDEFPSREVFEAACDYAREW
Sbjct: 361 QQNAHPRVAERIPSVPENVTDQIRLWESDLNRVDITPAHFYDEFPSREVFEAACDYAREW 420

Query: 421 NGLLWEDSKNLRLVVKADIHTHMREHLRRQK 451
           NGLLWEDSKNLRLVVKADIHTHMREHLRRQK
Sbjct: 421 NGLLWEDSKNLRLVVKADIHTHMREHLRRQK 451

[Close]

BLAST of CsGy6G034080 vs. NCBI nr
Match: XP_038882460.1 (general transcription and DNA repair factor IIH subunit TFB2 isoform X1 [Benincasa hispida])

HSP 1 Score: 871 bits (2250), Expect = 0.0
Identity = 439/451 (97.34%), Postives = 446/451 (98.89%), Query Frame = 0


Query: 1   MPQVKIIAKNFMDMVASLPAMKLDQLYENAFICEAILRSLPPLAKKFVLQMLYIDGPVSA 60
           MPQVKIIAKNFMDMVASLP MKLDQLYENAFICEAILRSLPPLAKKFVLQMLYID PVSA
Sbjct: 1   MPQVKIIAKNFMDMVASLPPMKLDQLYENAFICEAILRSLPPLAKKFVLQMLYIDAPVSA 60

Query: 61  KSMEEWVLPDGVSKYKVAVDRLIQLRVFIETADRKRETTYRLNPTFQANLQKLLIHGEVL 120
           KSMEEWVLPDGVSKYKVAVDRLIQLRVFIETADRKRETTYRLNP FQANLQKLLIHGEVL
Sbjct: 61  KSMEEWVLPDGVSKYKVAVDRLIQLRVFIETADRKRETTYRLNPMFQANLQKLLIHGEVL 120

Query: 121 AREPMPSNITVRLPSLEDLEAYALDQWECFLLQLINSGQAEKPSNISSSVMKVFQKGLLS 180
           AREPMP+NITVRLPSLE+L+AYALDQWECFLLQLINSGQAEKPSNISSSVMKVFQKGLLS
Sbjct: 121 AREPMPANITVRLPSLEELKAYALDQWECFLLQLINSGQAEKPSNISSSVMKVFQKGLLS 180

Query: 181 QRDKEAPRLTESGFQFLLMETNAQLWYIIREYISNAEERGVDPADLISFLLELSFHVTGE 240
           QRDKEAPRLTESGFQFLLMETNAQLWYIIREYISNAEERGVDPADLISFLLELSFHVTGE
Sbjct: 181 QRDKEAPRLTESGFQFLLMETNAQLWYIIREYISNAEERGVDPADLISFLLELSFHVTGE 240

Query: 241 AYDIDTLSDEQRYAIKDLADLGLVKLQQGRKESWFIPTKLATNLSMSLADSSSRKLGFVV 300
           AYDIDTL+DEQRYAIKDLADLGLVKLQQGRK+SWFIPTKLATNLSMSLADSSSRK GFVV
Sbjct: 241 AYDIDTLTDEQRYAIKDLADLGLVKLQQGRKDSWFIPTKLATNLSMSLADSSSRKQGFVV 300

Query: 301 VETNFRMYAYSTSKLHCEILRLFSRIEYQLPNLIVGAITKESLYNAFKNGITAEQIVTFL 360
           VETNFRMYAYS+SKLHCEILRLFSRIEYQLPNLIVGAITKESLYNAFKNGITAEQIVTFL
Sbjct: 301 VETNFRMYAYSSSKLHCEILRLFSRIEYQLPNLIVGAITKESLYNAFKNGITAEQIVTFL 360

Query: 361 QQNAHPRVAERIPSVPENVTDQIRLWESDLNRVDITPAHFYDEFPSREVFEAACDYAREW 420
           QQNAHPRVAERIPSVPENVTDQIRLWESDLNRVDITPAHFYDEFPSREVFEAACDYAREW
Sbjct: 361 QQNAHPRVAERIPSVPENVTDQIRLWESDLNRVDITPAHFYDEFPSREVFEAACDYAREW 420

Query: 421 NGLLWEDSKNLRLVVKADIHTHMREHLRRQK 451
           NGLLWED KN+RLVVKADIHTHMREHLRRQK
Sbjct: 421 NGLLWEDLKNMRLVVKADIHTHMREHLRRQK 451

[Close]

BLAST of CsGy6G034080 vs. NCBI nr
Match: XP_022977542.1 (RNA polymerase II transcription factor B subunit 2 [Cucurbita maxima])

HSP 1 Score: 870 bits (2247), Expect = 0.0
Identity = 437/451 (96.90%), Postives = 447/451 (99.11%), Query Frame = 0


Query: 1   MPQVKIIAKNFMDMVASLPAMKLDQLYENAFICEAILRSLPPLAKKFVLQMLYIDGPVSA 60
           MPQVKIIAKNFMDMVASLPAMKLDQLYENAFICEAILRSLPPLAKKFVLQMLYID PV+A
Sbjct: 1   MPQVKIIAKNFMDMVASLPAMKLDQLYENAFICEAILRSLPPLAKKFVLQMLYIDAPVTA 60

Query: 61  KSMEEWVLPDGVSKYKVAVDRLIQLRVFIETADRKRETTYRLNPTFQANLQKLLIHGEVL 120
           KSMEEWVLPDGVSKYKVAVDRLIQLRVFIETADRKRETTY+LNPTFQANLQKLLIHGEVL
Sbjct: 61  KSMEEWVLPDGVSKYKVAVDRLIQLRVFIETADRKRETTYKLNPTFQANLQKLLIHGEVL 120

Query: 121 AREPMPSNITVRLPSLEDLEAYALDQWECFLLQLINSGQAEKPSNISSSVMKVFQKGLLS 180
           AREPMPSNITVRLP+LE+LEAYALDQWECFLLQLINSGQA+KPSNISSSVMKVFQKGLLS
Sbjct: 121 AREPMPSNITVRLPNLEELEAYALDQWECFLLQLINSGQADKPSNISSSVMKVFQKGLLS 180

Query: 181 QRDKEAPRLTESGFQFLLMETNAQLWYIIREYISNAEERGVDPADLISFLLELSFHVTGE 240
           QRDKE PRLTESGFQFLLMETNAQLWYIIREYISNAEERGVDPADLISFLLELSFHVTGE
Sbjct: 181 QRDKETPRLTESGFQFLLMETNAQLWYIIREYISNAEERGVDPADLISFLLELSFHVTGE 240

Query: 241 AYDIDTLSDEQRYAIKDLADLGLVKLQQGRKESWFIPTKLATNLSMSLADSSSRKLGFVV 300
           AYDIDTL++EQRYAIKDLADLGLVKLQQGRK+SWFIPTKLATNLSMSLADSSSRK GFVV
Sbjct: 241 AYDIDTLTEEQRYAIKDLADLGLVKLQQGRKDSWFIPTKLATNLSMSLADSSSRKQGFVV 300

Query: 301 VETNFRMYAYSTSKLHCEILRLFSRIEYQLPNLIVGAITKESLYNAFKNGITAEQIVTFL 360
           VETNFRMYAYS+SKLHCEILRLFSRIEYQLPNLIVGAITKESLYNAFKNGITA+QIVTFL
Sbjct: 301 VETNFRMYAYSSSKLHCEILRLFSRIEYQLPNLIVGAITKESLYNAFKNGITAQQIVTFL 360

Query: 361 QQNAHPRVAERIPSVPENVTDQIRLWESDLNRVDITPAHFYDEFPSREVFEAACDYAREW 420
           QQNAHPRVAERIPSVPENVTDQIRLWESDLNRVDITPAHFYDEFPSREVFEAACDYAREW
Sbjct: 361 QQNAHPRVAERIPSVPENVTDQIRLWESDLNRVDITPAHFYDEFPSREVFEAACDYAREW 420

Query: 421 NGLLWEDSKNLRLVVKADIHTHMREHLRRQK 451
           NGLLWEDSK LRLVVKADIHTHMREHLRRQK
Sbjct: 421 NGLLWEDSKTLRLVVKADIHTHMREHLRRQK 451

[Close]

BLAST of CsGy6G034080 vs. NCBI nr
Match: XP_023543805.1 (RNA polymerase II transcription factor B subunit 2 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 867 bits (2240), Expect = 0.0
Identity = 436/451 (96.67%), Postives = 446/451 (98.89%), Query Frame = 0


Query: 1   MPQVKIIAKNFMDMVASLPAMKLDQLYENAFICEAILRSLPPLAKKFVLQMLYIDGPVSA 60
           MPQVKIIAKNFMDMVASLPAMKLDQLYENAFICEAILRSLPPLAKKFVLQMLYID PV+A
Sbjct: 1   MPQVKIIAKNFMDMVASLPAMKLDQLYENAFICEAILRSLPPLAKKFVLQMLYIDAPVTA 60

Query: 61  KSMEEWVLPDGVSKYKVAVDRLIQLRVFIETADRKRETTYRLNPTFQANLQKLLIHGEVL 120
           KSMEEWVLPDGVSKYKVAVDRLIQLRVFIETADRKRETTY+LNPTFQANLQKLLIHGEVL
Sbjct: 61  KSMEEWVLPDGVSKYKVAVDRLIQLRVFIETADRKRETTYKLNPTFQANLQKLLIHGEVL 120

Query: 121 AREPMPSNITVRLPSLEDLEAYALDQWECFLLQLINSGQAEKPSNISSSVMKVFQKGLLS 180
           AREPMPSNITVRLP+LE+LEAYALDQWECFLLQLINSGQA+KPSNISSSVMKVFQKGLLS
Sbjct: 121 AREPMPSNITVRLPNLEELEAYALDQWECFLLQLINSGQADKPSNISSSVMKVFQKGLLS 180

Query: 181 QRDKEAPRLTESGFQFLLMETNAQLWYIIREYISNAEERGVDPADLISFLLELSFHVTGE 240
           QRDKE PRLTESGFQFLLMETNAQLWYIIREYISNAEER VDPADLISFLLELSFHVTGE
Sbjct: 181 QRDKETPRLTESGFQFLLMETNAQLWYIIREYISNAEERDVDPADLISFLLELSFHVTGE 240

Query: 241 AYDIDTLSDEQRYAIKDLADLGLVKLQQGRKESWFIPTKLATNLSMSLADSSSRKLGFVV 300
           AYDIDTL++EQRYAIKDLADLGLVKLQQGRK+SWFIPTKLATNLSMSLADSSSRK GFVV
Sbjct: 241 AYDIDTLTEEQRYAIKDLADLGLVKLQQGRKDSWFIPTKLATNLSMSLADSSSRKQGFVV 300

Query: 301 VETNFRMYAYSTSKLHCEILRLFSRIEYQLPNLIVGAITKESLYNAFKNGITAEQIVTFL 360
           VETNFRMYAYS+SKLHCEILRLFSRIEYQLPNLIVGAITKESLYNAFKNGITA+QIVTFL
Sbjct: 301 VETNFRMYAYSSSKLHCEILRLFSRIEYQLPNLIVGAITKESLYNAFKNGITAQQIVTFL 360

Query: 361 QQNAHPRVAERIPSVPENVTDQIRLWESDLNRVDITPAHFYDEFPSREVFEAACDYAREW 420
           QQNAHPRVAERIPSVPENVTDQIRLWESDLNRVDITPAHFYDEFPSREVFEAACDYAREW
Sbjct: 361 QQNAHPRVAERIPSVPENVTDQIRLWESDLNRVDITPAHFYDEFPSREVFEAACDYAREW 420

Query: 421 NGLLWEDSKNLRLVVKADIHTHMREHLRRQK 451
           NGLLWEDSK LRLVVKADIHTHMREHLRRQK
Sbjct: 421 NGLLWEDSKTLRLVVKADIHTHMREHLRRQK 451

[Close]

BLAST of CsGy6G034080 vs. NCBI nr
Match: KAG6604444.1 (General transcription and DNA repair factor IIH subunit TFB2, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 867 bits (2240), Expect = 0.0
Identity = 436/451 (96.67%), Postives = 446/451 (98.89%), Query Frame = 0


Query: 1   MPQVKIIAKNFMDMVASLPAMKLDQLYENAFICEAILRSLPPLAKKFVLQMLYIDGPVSA 60
           MPQVKIIAKNFMDMVASLPAMKLDQLYENAFICEAILRSLPPLAKKFVLQMLYID PV+A
Sbjct: 32  MPQVKIIAKNFMDMVASLPAMKLDQLYENAFICEAILRSLPPLAKKFVLQMLYIDAPVTA 91

Query: 61  KSMEEWVLPDGVSKYKVAVDRLIQLRVFIETADRKRETTYRLNPTFQANLQKLLIHGEVL 120
           KSMEEWVLPDGVSKYKVAVDRLIQLRVFIETADRKRETTY+LNPTFQANLQKLLIHGEVL
Sbjct: 92  KSMEEWVLPDGVSKYKVAVDRLIQLRVFIETADRKRETTYKLNPTFQANLQKLLIHGEVL 151

Query: 121 AREPMPSNITVRLPSLEDLEAYALDQWECFLLQLINSGQAEKPSNISSSVMKVFQKGLLS 180
           AREPMPSNITVRLP+LE+LEAYALDQWECFLLQLINSGQA+KPSNISSSVMKVFQKGLLS
Sbjct: 152 AREPMPSNITVRLPNLEELEAYALDQWECFLLQLINSGQADKPSNISSSVMKVFQKGLLS 211

Query: 181 QRDKEAPRLTESGFQFLLMETNAQLWYIIREYISNAEERGVDPADLISFLLELSFHVTGE 240
           QRDKE PRLTESGFQFLLMETNAQLWYIIREYISNAEER VDPADLISFLLELSFHVTGE
Sbjct: 212 QRDKETPRLTESGFQFLLMETNAQLWYIIREYISNAEERDVDPADLISFLLELSFHVTGE 271

Query: 241 AYDIDTLSDEQRYAIKDLADLGLVKLQQGRKESWFIPTKLATNLSMSLADSSSRKLGFVV 300
           AYDIDTL++EQRYAIKDLADLGLVKLQQGRK+SWFIPTKLATNLSMSLADSSSRK GFVV
Sbjct: 272 AYDIDTLTEEQRYAIKDLADLGLVKLQQGRKDSWFIPTKLATNLSMSLADSSSRKQGFVV 331

Query: 301 VETNFRMYAYSTSKLHCEILRLFSRIEYQLPNLIVGAITKESLYNAFKNGITAEQIVTFL 360
           VETNFRMYAYS+SKLHCEILRLFSRIEYQLPNLIVGAITKESLYNAFKNGITA+QIVTFL
Sbjct: 332 VETNFRMYAYSSSKLHCEILRLFSRIEYQLPNLIVGAITKESLYNAFKNGITAQQIVTFL 391

Query: 361 QQNAHPRVAERIPSVPENVTDQIRLWESDLNRVDITPAHFYDEFPSREVFEAACDYAREW 420
           QQNAHPRVAERIPSVPENVTDQIRLWESDLNRVDITPAHFYDEFPSREVFEAACDYAREW
Sbjct: 392 QQNAHPRVAERIPSVPENVTDQIRLWESDLNRVDITPAHFYDEFPSREVFEAACDYAREW 451

Query: 421 NGLLWEDSKNLRLVVKADIHTHMREHLRRQK 451
           NGLLWEDSK LRLVVKADIHTHMREHLRRQK
Sbjct: 452 NGLLWEDSKTLRLVVKADIHTHMREHLRRQK 482

[Close]

BLAST of CsGy6G034080 vs. ExPASy TrEMBL
Match: A0A0A0KK55 (RNA polymerase II transcription factor B subunit 2 OS=Cucumis sativus OX=3659 GN=Csa_6G517270 PE=3 SV=1)

HSP 1 Score: 891 bits (2302), Expect = 0.0
Identity = 451/451 (100.00%), Postives = 451/451 (100.00%), Query Frame = 0


Query: 1   MPQVKIIAKNFMDMVASLPAMKLDQLYENAFICEAILRSLPPLAKKFVLQMLYIDGPVSA 60
           MPQVKIIAKNFMDMVASLPAMKLDQLYENAFICEAILRSLPPLAKKFVLQMLYIDGPVSA
Sbjct: 1   MPQVKIIAKNFMDMVASLPAMKLDQLYENAFICEAILRSLPPLAKKFVLQMLYIDGPVSA 60

Query: 61  KSMEEWVLPDGVSKYKVAVDRLIQLRVFIETADRKRETTYRLNPTFQANLQKLLIHGEVL 120
           KSMEEWVLPDGVSKYKVAVDRLIQLRVFIETADRKRETTYRLNPTFQANLQKLLIHGEVL
Sbjct: 61  KSMEEWVLPDGVSKYKVAVDRLIQLRVFIETADRKRETTYRLNPTFQANLQKLLIHGEVL 120

Query: 121 AREPMPSNITVRLPSLEDLEAYALDQWECFLLQLINSGQAEKPSNISSSVMKVFQKGLLS 180
           AREPMPSNITVRLPSLEDLEAYALDQWECFLLQLINSGQAEKPSNISSSVMKVFQKGLLS
Sbjct: 121 AREPMPSNITVRLPSLEDLEAYALDQWECFLLQLINSGQAEKPSNISSSVMKVFQKGLLS 180

Query: 181 QRDKEAPRLTESGFQFLLMETNAQLWYIIREYISNAEERGVDPADLISFLLELSFHVTGE 240
           QRDKEAPRLTESGFQFLLMETNAQLWYIIREYISNAEERGVDPADLISFLLELSFHVTGE
Sbjct: 181 QRDKEAPRLTESGFQFLLMETNAQLWYIIREYISNAEERGVDPADLISFLLELSFHVTGE 240

Query: 241 AYDIDTLSDEQRYAIKDLADLGLVKLQQGRKESWFIPTKLATNLSMSLADSSSRKLGFVV 300
           AYDIDTLSDEQRYAIKDLADLGLVKLQQGRKESWFIPTKLATNLSMSLADSSSRKLGFVV
Sbjct: 241 AYDIDTLSDEQRYAIKDLADLGLVKLQQGRKESWFIPTKLATNLSMSLADSSSRKLGFVV 300

Query: 301 VETNFRMYAYSTSKLHCEILRLFSRIEYQLPNLIVGAITKESLYNAFKNGITAEQIVTFL 360
           VETNFRMYAYSTSKLHCEILRLFSRIEYQLPNLIVGAITKESLYNAFKNGITAEQIVTFL
Sbjct: 301 VETNFRMYAYSTSKLHCEILRLFSRIEYQLPNLIVGAITKESLYNAFKNGITAEQIVTFL 360

Query: 361 QQNAHPRVAERIPSVPENVTDQIRLWESDLNRVDITPAHFYDEFPSREVFEAACDYAREW 420
           QQNAHPRVAERIPSVPENVTDQIRLWESDLNRVDITPAHFYDEFPSREVFEAACDYAREW
Sbjct: 361 QQNAHPRVAERIPSVPENVTDQIRLWESDLNRVDITPAHFYDEFPSREVFEAACDYAREW 420

Query: 421 NGLLWEDSKNLRLVVKADIHTHMREHLRRQK 451
           NGLLWEDSKNLRLVVKADIHTHMREHLRRQK
Sbjct: 421 NGLLWEDSKNLRLVVKADIHTHMREHLRRQK 451

[Close]

BLAST of CsGy6G034080 vs. ExPASy TrEMBL
Match: A0A6J1IIT5 (RNA polymerase II transcription factor B subunit 2 OS=Cucurbita maxima OX=3661 GN=LOC111477843 PE=3 SV=1)

HSP 1 Score: 870 bits (2247), Expect = 0.0
Identity = 437/451 (96.90%), Postives = 447/451 (99.11%), Query Frame = 0


Query: 1   MPQVKIIAKNFMDMVASLPAMKLDQLYENAFICEAILRSLPPLAKKFVLQMLYIDGPVSA 60
           MPQVKIIAKNFMDMVASLPAMKLDQLYENAFICEAILRSLPPLAKKFVLQMLYID PV+A
Sbjct: 1   MPQVKIIAKNFMDMVASLPAMKLDQLYENAFICEAILRSLPPLAKKFVLQMLYIDAPVTA 60

Query: 61  KSMEEWVLPDGVSKYKVAVDRLIQLRVFIETADRKRETTYRLNPTFQANLQKLLIHGEVL 120
           KSMEEWVLPDGVSKYKVAVDRLIQLRVFIETADRKRETTY+LNPTFQANLQKLLIHGEVL
Sbjct: 61  KSMEEWVLPDGVSKYKVAVDRLIQLRVFIETADRKRETTYKLNPTFQANLQKLLIHGEVL 120

Query: 121 AREPMPSNITVRLPSLEDLEAYALDQWECFLLQLINSGQAEKPSNISSSVMKVFQKGLLS 180
           AREPMPSNITVRLP+LE+LEAYALDQWECFLLQLINSGQA+KPSNISSSVMKVFQKGLLS
Sbjct: 121 AREPMPSNITVRLPNLEELEAYALDQWECFLLQLINSGQADKPSNISSSVMKVFQKGLLS 180

Query: 181 QRDKEAPRLTESGFQFLLMETNAQLWYIIREYISNAEERGVDPADLISFLLELSFHVTGE 240
           QRDKE PRLTESGFQFLLMETNAQLWYIIREYISNAEERGVDPADLISFLLELSFHVTGE
Sbjct: 181 QRDKETPRLTESGFQFLLMETNAQLWYIIREYISNAEERGVDPADLISFLLELSFHVTGE 240

Query: 241 AYDIDTLSDEQRYAIKDLADLGLVKLQQGRKESWFIPTKLATNLSMSLADSSSRKLGFVV 300
           AYDIDTL++EQRYAIKDLADLGLVKLQQGRK+SWFIPTKLATNLSMSLADSSSRK GFVV
Sbjct: 241 AYDIDTLTEEQRYAIKDLADLGLVKLQQGRKDSWFIPTKLATNLSMSLADSSSRKQGFVV 300

Query: 301 VETNFRMYAYSTSKLHCEILRLFSRIEYQLPNLIVGAITKESLYNAFKNGITAEQIVTFL 360
           VETNFRMYAYS+SKLHCEILRLFSRIEYQLPNLIVGAITKESLYNAFKNGITA+QIVTFL
Sbjct: 301 VETNFRMYAYSSSKLHCEILRLFSRIEYQLPNLIVGAITKESLYNAFKNGITAQQIVTFL 360

Query: 361 QQNAHPRVAERIPSVPENVTDQIRLWESDLNRVDITPAHFYDEFPSREVFEAACDYAREW 420
           QQNAHPRVAERIPSVPENVTDQIRLWESDLNRVDITPAHFYDEFPSREVFEAACDYAREW
Sbjct: 361 QQNAHPRVAERIPSVPENVTDQIRLWESDLNRVDITPAHFYDEFPSREVFEAACDYAREW 420

Query: 421 NGLLWEDSKNLRLVVKADIHTHMREHLRRQK 451
           NGLLWEDSK LRLVVKADIHTHMREHLRRQK
Sbjct: 421 NGLLWEDSKTLRLVVKADIHTHMREHLRRQK 451

[Close]

BLAST of CsGy6G034080 vs. ExPASy TrEMBL
Match: A0A6J1EGA7 (RNA polymerase II transcription factor B subunit 2 OS=Cucurbita moschata OX=3662 GN=LOC111433104 PE=3 SV=1)

HSP 1 Score: 861 bits (2225), Expect = 6.60e-315
Identity = 434/451 (96.23%), Postives = 444/451 (98.45%), Query Frame = 0


Query: 1   MPQVKIIAKNFMDMVASLPAMKLDQLYENAFICEAILRSLPPLAKKFVLQMLYIDGPVSA 60
           MPQVKIIAKNFMDMVASLPAMKLDQLY NAFICEAILRSLPPLAKKFVLQMLYID PV+A
Sbjct: 1   MPQVKIIAKNFMDMVASLPAMKLDQLYGNAFICEAILRSLPPLAKKFVLQMLYIDAPVTA 60

Query: 61  KSMEEWVLPDGVSKYKVAVDRLIQLRVFIETADRKRETTYRLNPTFQANLQKLLIHGEVL 120
           KSMEEWVLPDGVSKYKVAVDRLIQLRVFIETADRKRETTY+LNPTFQANLQKLLI GEVL
Sbjct: 61  KSMEEWVLPDGVSKYKVAVDRLIQLRVFIETADRKRETTYKLNPTFQANLQKLLIQGEVL 120

Query: 121 AREPMPSNITVRLPSLEDLEAYALDQWECFLLQLINSGQAEKPSNISSSVMKVFQKGLLS 180
           AREPMPSNITVRLP+LE+LEAYALDQWECFLLQLINSGQA+KPSNISSSVMKVFQKGLLS
Sbjct: 121 AREPMPSNITVRLPNLEELEAYALDQWECFLLQLINSGQADKPSNISSSVMKVFQKGLLS 180

Query: 181 QRDKEAPRLTESGFQFLLMETNAQLWYIIREYISNAEERGVDPADLISFLLELSFHVTGE 240
           QRDKE PRLTESGFQFLLMETNAQLWYIIREYISNAEER VDPADLISFLLELSFHVTGE
Sbjct: 181 QRDKETPRLTESGFQFLLMETNAQLWYIIREYISNAEERDVDPADLISFLLELSFHVTGE 240

Query: 241 AYDIDTLSDEQRYAIKDLADLGLVKLQQGRKESWFIPTKLATNLSMSLADSSSRKLGFVV 300
           AYDIDTL++EQRYAIKDLADLGLVKLQQGRK+SWFIPTKLATNLSMSLADSSSRK GFVV
Sbjct: 241 AYDIDTLTEEQRYAIKDLADLGLVKLQQGRKDSWFIPTKLATNLSMSLADSSSRKQGFVV 300

Query: 301 VETNFRMYAYSTSKLHCEILRLFSRIEYQLPNLIVGAITKESLYNAFKNGITAEQIVTFL 360
           VETNFRMYAYS+SKLHCEILRLFSRIEYQLPNLIVGAITKESLYNAFKNGITA+QIVTFL
Sbjct: 301 VETNFRMYAYSSSKLHCEILRLFSRIEYQLPNLIVGAITKESLYNAFKNGITAQQIVTFL 360

Query: 361 QQNAHPRVAERIPSVPENVTDQIRLWESDLNRVDITPAHFYDEFPSREVFEAACDYAREW 420
           QQNAHPRVAERIPSVPENVTDQIRLWESDLNRVDITPAHFYDEFPSREVFEAACDYAREW
Sbjct: 361 QQNAHPRVAERIPSVPENVTDQIRLWESDLNRVDITPAHFYDEFPSREVFEAACDYAREW 420

Query: 421 NGLLWEDSKNLRLVVKADIHTHMREHLRRQK 451
           NGLLWEDSK LRLVVKADIHTHMREHLRRQK
Sbjct: 421 NGLLWEDSKTLRLVVKADIHTHMREHLRRQK 451

[Close]

BLAST of CsGy6G034080 vs. ExPASy TrEMBL
Match: A0A6J1CK16 (RNA polymerase II transcription factor B subunit 2 OS=Momordica charantia OX=3673 GN=LOC111012326 PE=3 SV=1)

HSP 1 Score: 847 bits (2187), Expect = 1.81e-308
Identity = 435/491 (88.59%), Postives = 447/491 (91.04%), Query Frame = 0


Query: 1   MPQVKIIAKNFMDMVASLPAMKLDQLYENAFICEAILRSLPPLAKKFVLQMLYIDGPVSA 60
           MPQVKIIAKNFMDMVASLPAMKLD LYENAFICEAILRSLPPLAKKFVLQMLYI+ PV+A
Sbjct: 1   MPQVKIIAKNFMDMVASLPAMKLDNLYENAFICEAILRSLPPLAKKFVLQMLYIEAPVAA 60

Query: 61  KSMEEWVLPDGVSKYKVAVDRLIQLRVFIETADRKRETTYRLNPTFQANLQKLLIHGEVL 120
           KSMEEWVL DGVSKYKVA+DRLIQLRVFIETADRKRETTYRLNPTFQANLQKLLI+GEVL
Sbjct: 61  KSMEEWVLSDGVSKYKVALDRLIQLRVFIETADRKRETTYRLNPTFQANLQKLLIYGEVL 120

Query: 121 AREPMPSNITVRLPSLEDLEAYALDQWECFLLQLINSGQAEKPSNISSSVMKVFQKGLLS 180
           AREPMPSNITVRLPSLEDLEAYALDQWECFLLQLINSGQAEKPSNISSSVMKVFQKGLLS
Sbjct: 121 AREPMPSNITVRLPSLEDLEAYALDQWECFLLQLINSGQAEKPSNISSSVMKVFQKGLLS 180

Query: 181 QRDKEAPRLTESGFQFLLMETNAQLWYIIREYISNAEERGVDPADLISFLLELSFHVTGE 240
           QRDKEAPRLTESGFQFLLMETNAQLWYIIREYISN+EERGVDPADLISFLLELSFHVTGE
Sbjct: 181 QRDKEAPRLTESGFQFLLMETNAQLWYIIREYISNSEERGVDPADLISFLLELSFHVTGE 240

Query: 241 ----------------------------------------AYDIDTLSDEQRYAIKDLAD 300
                                                   AYDIDTL++EQRYAIKDLAD
Sbjct: 241 LQWLFGDADLLLRFVCLFRGALFFIVLSGFLYFWEFISFLAYDIDTLTEEQRYAIKDLAD 300

Query: 301 LGLVKLQQGRKESWFIPTKLATNLSMSLADSSSRKLGFVVVETNFRMYAYSTSKLHCEIL 360
           LGLVKLQQGRK+SWFIPTKLATNLSMSLADSSSRK GFVVVETNFRMYAYS+S+LHCEIL
Sbjct: 301 LGLVKLQQGRKDSWFIPTKLATNLSMSLADSSSRKQGFVVVETNFRMYAYSSSRLHCEIL 360

Query: 361 RLFSRIEYQLPNLIVGAITKESLYNAFKNGITAEQIVTFLQQNAHPRVAERIPSVPENVT 420
           RLFSRIEYQLPNLIVGAITKESLYNAFKNGITAEQIVTFLQQNAHPRVAERIPSVPENVT
Sbjct: 361 RLFSRIEYQLPNLIVGAITKESLYNAFKNGITAEQIVTFLQQNAHPRVAERIPSVPENVT 420

Query: 421 DQIRLWESDLNRVDITPAHFYDEFPSREVFEAACDYAREWNGLLWEDSKNLRLVVKADIH 451
           DQIRLWESDLNRVDITPAHFYDEFPSREVFEAACDYAREWNGLLWEDSKN+RLVVKAD+H
Sbjct: 421 DQIRLWESDLNRVDITPAHFYDEFPSREVFEAACDYAREWNGLLWEDSKNMRLVVKADVH 480

[Close]

BLAST of CsGy6G034080 vs. ExPASy TrEMBL
Match: A0A5A7UBE2 (RNA polymerase II transcription factor B subunit 2 OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold120G003070 PE=3 SV=1)

HSP 1 Score: 834 bits (2154), Expect = 7.98e-302
Identity = 430/458 (93.89%), Postives = 431/458 (94.10%), Query Frame = 0


Query: 1   MPQVKIIAKNFMDMVASLPAMKLDQLYENAFICEAILRSLPPLAKKFVLQMLYIDGPVSA 60
           MPQVKIIAKNFMDMVASLPAMKLDQLYENAFICEAILRSLPPLAKKFVLQMLYID PVSA
Sbjct: 1   MPQVKIIAKNFMDMVASLPAMKLDQLYENAFICEAILRSLPPLAKKFVLQMLYIDAPVSA 60

Query: 61  KSMEEWVLPDGVSKYKVAVDRLIQLRVFIETADRKRETTYRLNPTFQANLQKLLIHGEVL 120
           KSMEEWVLPDGVSKYKVAVDRLIQLRVFIETADRKRETTYRLNPTFQANLQKLLIHGEVL
Sbjct: 61  KSMEEWVLPDGVSKYKVAVDRLIQLRVFIETADRKRETTYRLNPTFQANLQKLLIHGEVL 120

Query: 121 AREPMPSNITVRLPSLEDLEAYALDQWECFLLQLINSGQAEKPSNISSSVMKVFQKGLLS 180
           AREPMPSNITVRLPSLEDLEAYALDQWECFLLQLINSGQAEKPSNISSSVMKVFQKGLLS
Sbjct: 121 AREPMPSNITVRLPSLEDLEAYALDQWECFLLQLINSGQAEKPSNISSSVMKVFQKGLLS 180

Query: 181 QR-------------------------DKEAPRLTESGFQFLLMETNAQLWYIIREYISN 240
           QR                         DKEAPRLTESGFQFLLMETNAQLWYIIREYISN
Sbjct: 181 QRLKSCSMYSSLYFARYLIKCYVWYSRDKEAPRLTESGFQFLLMETNAQLWYIIREYISN 240

Query: 241 AEERGVDPADLISFLLELSFHVTGEAYDIDTLSDEQRYAIKDLADLGLVKLQQGRKESWF 300
           AEERGVDPADLISFLLELSFHVTGEAYDIDTLSDEQRYAIKDLADLGLVKLQQGRKESWF
Sbjct: 241 AEERGVDPADLISFLLELSFHVTGEAYDIDTLSDEQRYAIKDLADLGLVKLQQGRKESWF 300

Query: 301 IPTKLATNLSMSLADSSSRKLGFVVVETNFRMYAYSTSKLHCEILRLFSRIEYQLPNLIV 360
           IPTKLATNLSMSLADSSSRK GFVVVETNFRMYAYS+SKLHCEILRLFSRIEYQLPNLIV
Sbjct: 301 IPTKLATNLSMSLADSSSRKQGFVVVETNFRMYAYSSSKLHCEILRLFSRIEYQLPNLIV 360

Query: 361 GAITKESLYNAFKNGITAEQIVTFLQQNAHPRVAERIPSVPENVTDQIRLWESDLNRVDI 420
           GAITKESLYNAFKNGITAEQIVTFLQQNAHPRVAERIPSVPENVTDQIRLWESDLNRVDI
Sbjct: 361 GAITKESLYNAFKNGITAEQIVTFLQQNAHPRVAERIPSVPENVTDQIRLWESDLNRVDI 420

Query: 421 TPAHFYDEFPSREVFEAACDYAREWNGLLWEDSKNLRL 433
           TPAHFYDEFPSREVFEAACDYAREWNGLLWEDSKNLRL
Sbjct: 421 TPAHFYDEFPSREVFEAACDYAREWNGLLWEDSKNLRL 458

[Close]

BLAST of CsGy6G034080 vs. TAIR 10
Match: AT4G17020.2 (transcription factor-related )

HSP 1 Score: 723.0 bits (1865), Expect = 1.5e-208
Identity = 352/450 (78.22%), Postives = 403/450 (89.56%), Query Frame = 0


Query: 1   MPQVKIIAKNFMDMVASLPAMKLDQLYENAFICEAILRSLPPLAKKFVLQMLYIDGPVSA 60
           MPQVKIIAKNFMDMVASLPA+KLD+LY N FICEAILRSLPPLAKK+VLQMLYID PV A
Sbjct: 1   MPQVKIIAKNFMDMVASLPAIKLDKLYNNVFICEAILRSLPPLAKKYVLQMLYIDVPVPA 60

Query: 61  KSMEEWVLPDGVSKYKVAVDRLIQLRVFIETADRKRETTYRLNPTFQANLQKLLIHGEVL 120
             MEEWVL DG SK++VA+DRLIQLR+F E +DRKR T+Y LNPTFQ NLQK +I G VL
Sbjct: 61  TMMEEWVLADGTSKHRVAIDRLIQLRIFSEISDRKRGTSYSLNPTFQNNLQKHIISGGVL 120

Query: 121 AREPMPSNITVRLPSLEDLEAYALDQWECFLLQLINSGQAEKPSNISSSVMKVFQKGLLS 180
            REPM S+  ++LPSL++LE YAL QWECFLLQLINSGQ EK + ISSS+MK+FQ+GLLS
Sbjct: 121 PREPMNSDNAIKLPSLQELETYALKQWECFLLQLINSGQGEKLTGISSSMMKIFQRGLLS 180

Query: 181 QRDKEAPRLTESGFQFLLMETNAQLWYIIREYISNAEERGVDPADLISFLLELSFHVTGE 240
           QRDK+ PRLTESGFQFLLM+TNAQLWYIIREYI NAEER VDPADLISFLLELSFHVTG+
Sbjct: 181 QRDKDGPRLTESGFQFLLMDTNAQLWYIIREYILNAEERDVDPADLISFLLELSFHVTGQ 240

Query: 241 AYDIDTLSDEQRYAIKDLADLGLVKLQQGRKESWFIPTKLATNLSMSLADSSSRKLGFVV 300
           AY+++TL++ Q   +KDLADLGLVKLQQGRK+SWFIPTKLATNLS+SLADSS+RK GFVV
Sbjct: 241 AYNLNTLTEVQNNTLKDLADLGLVKLQQGRKDSWFIPTKLATNLSVSLADSSARKEGFVV 300

Query: 301 VETNFRMYAYSTSKLHCEILRLFSRIEYQLPNLIVGAITKESLYNAFKNGITAEQIVTFL 360
           +ETNFRMYAYSTSKL CEILRLF+RIEYQLPNLI  AITKESLYNAF NGIT++QI+TFL
Sbjct: 301 METNFRMYAYSTSKLQCEILRLFARIEYQLPNLIACAITKESLYNAFDNGITSDQIITFL 360

Query: 361 QQNAHPRVAERIPSVPENVTDQIRLWESDLNRVDITPAHFYDEFPSREVFEAACDYAREW 420
           QQN+HPR A+R+PS+PENVTDQIRLWE+DL R+++T AHFYDEFPS++VFEAACD+AREW
Sbjct: 361 QQNSHPRCADRVPSIPENVTDQIRLWETDLQRIEMTQAHFYDEFPSKDVFEAACDFAREW 420

Query: 421 NGLLWEDSKNLRLVVKADIHTHMREHLRRQ 451
            GLLWEDSK +RLVVK+++H  MRE L  Q
Sbjct: 421 RGLLWEDSKRMRLVVKSEVHNQMREFLHTQ 450

[Close]

BLAST of CsGy6G034080 vs. TAIR 10
Match: AT4G17020.1 (transcription factor-related )

HSP 1 Score: 723.0 bits (1865), Expect = 1.5e-208
Identity = 352/450 (78.22%), Postives = 403/450 (89.56%), Query Frame = 0


Query: 1   MPQVKIIAKNFMDMVASLPAMKLDQLYENAFICEAILRSLPPLAKKFVLQMLYIDGPVSA 60
           MPQVKIIAKNFMDMVASLPA+KLD+LY N FICEAILRSLPPLAKK+VLQMLYID PV A
Sbjct: 1   MPQVKIIAKNFMDMVASLPAIKLDKLYNNVFICEAILRSLPPLAKKYVLQMLYIDVPVPA 60

Query: 61  KSMEEWVLPDGVSKYKVAVDRLIQLRVFIETADRKRETTYRLNPTFQANLQKLLIHGEVL 120
             MEEWVL DG SK++VA+DRLIQLR+F E +DRKR T+Y LNPTFQ NLQK +I G VL
Sbjct: 61  TMMEEWVLADGTSKHRVAIDRLIQLRIFSEISDRKRGTSYSLNPTFQNNLQKHIISGGVL 120

Query: 121 AREPMPSNITVRLPSLEDLEAYALDQWECFLLQLINSGQAEKPSNISSSVMKVFQKGLLS 180
            REPM S+  ++LPSL++LE YAL QWECFLLQLINSGQ EK + ISSS+MK+FQ+GLLS
Sbjct: 121 PREPMNSDNAIKLPSLQELETYALKQWECFLLQLINSGQGEKLTGISSSMMKIFQRGLLS 180

Query: 181 QRDKEAPRLTESGFQFLLMETNAQLWYIIREYISNAEERGVDPADLISFLLELSFHVTGE 240
           QRDK+ PRLTESGFQFLLM+TNAQLWYIIREYI NAEER VDPADLISFLLELSFHVTG+
Sbjct: 181 QRDKDGPRLTESGFQFLLMDTNAQLWYIIREYILNAEERDVDPADLISFLLELSFHVTGQ 240

Query: 241 AYDIDTLSDEQRYAIKDLADLGLVKLQQGRKESWFIPTKLATNLSMSLADSSSRKLGFVV 300
           AY+++TL++ Q   +KDLADLGLVKLQQGRK+SWFIPTKLATNLS+SLADSS+RK GFVV
Sbjct: 241 AYNLNTLTEVQNNTLKDLADLGLVKLQQGRKDSWFIPTKLATNLSVSLADSSARKEGFVV 300

Query: 301 VETNFRMYAYSTSKLHCEILRLFSRIEYQLPNLIVGAITKESLYNAFKNGITAEQIVTFL 360
           +ETNFRMYAYSTSKL CEILRLF+RIEYQLPNLI  AITKESLYNAF NGIT++QI+TFL
Sbjct: 301 METNFRMYAYSTSKLQCEILRLFARIEYQLPNLIACAITKESLYNAFDNGITSDQIITFL 360

Query: 361 QQNAHPRVAERIPSVPENVTDQIRLWESDLNRVDITPAHFYDEFPSREVFEAACDYAREW 420
           QQN+HPR A+R+PS+PENVTDQIRLWE+DL R+++T AHFYDEFPS++VFEAACD+AREW
Sbjct: 361 QQNSHPRCADRVPSIPENVTDQIRLWETDLQRIEMTQAHFYDEFPSKDVFEAACDFAREW 420

Query: 421 NGLLWEDSKNLRLVVKADIHTHMREHLRRQ 451
            GLLWEDSK +RLVVK+++H  MRE L  Q
Sbjct: 421 RGLLWEDSKRMRLVVKSEVHNQMREFLHTQ 450

[Close]

BLAST of CsGy6G034080 vs. TAIR 10
Match: AT4G17020.3 (transcription factor-related )

HSP 1 Score: 723.0 bits (1865), Expect = 1.5e-208
Identity = 352/450 (78.22%), Postives = 403/450 (89.56%), Query Frame = 0


Query: 1   MPQVKIIAKNFMDMVASLPAMKLDQLYENAFICEAILRSLPPLAKKFVLQMLYIDGPVSA 60
           MPQVKIIAKNFMDMVASLPA+KLD+LY N FICEAILRSLPPLAKK+VLQMLYID PV A
Sbjct: 1   MPQVKIIAKNFMDMVASLPAIKLDKLYNNVFICEAILRSLPPLAKKYVLQMLYIDVPVPA 60

Query: 61  KSMEEWVLPDGVSKYKVAVDRLIQLRVFIETADRKRETTYRLNPTFQANLQKLLIHGEVL 120
             MEEWVL DG SK++VA+DRLIQLR+F E +DRKR T+Y LNPTFQ NLQK +I G VL
Sbjct: 61  TMMEEWVLADGTSKHRVAIDRLIQLRIFSEISDRKRGTSYSLNPTFQNNLQKHIISGGVL 120

Query: 121 AREPMPSNITVRLPSLEDLEAYALDQWECFLLQLINSGQAEKPSNISSSVMKVFQKGLLS 180
            REPM S+  ++LPSL++LE YAL QWECFLLQLINSGQ EK + ISSS+MK+FQ+GLLS
Sbjct: 121 PREPMNSDNAIKLPSLQELETYALKQWECFLLQLINSGQGEKLTGISSSMMKIFQRGLLS 180

Query: 181 QRDKEAPRLTESGFQFLLMETNAQLWYIIREYISNAEERGVDPADLISFLLELSFHVTGE 240
           QRDK+ PRLTESGFQFLLM+TNAQLWYIIREYI NAEER VDPADLISFLLELSFHVTG+
Sbjct: 181 QRDKDGPRLTESGFQFLLMDTNAQLWYIIREYILNAEERDVDPADLISFLLELSFHVTGQ 240

Query: 241 AYDIDTLSDEQRYAIKDLADLGLVKLQQGRKESWFIPTKLATNLSMSLADSSSRKLGFVV 300
           AY+++TL++ Q   +KDLADLGLVKLQQGRK+SWFIPTKLATNLS+SLADSS+RK GFVV
Sbjct: 241 AYNLNTLTEVQNNTLKDLADLGLVKLQQGRKDSWFIPTKLATNLSVSLADSSARKEGFVV 300

Query: 301 VETNFRMYAYSTSKLHCEILRLFSRIEYQLPNLIVGAITKESLYNAFKNGITAEQIVTFL 360
           +ETNFRMYAYSTSKL CEILRLF+RIEYQLPNLI  AITKESLYNAF NGIT++QI+TFL
Sbjct: 301 METNFRMYAYSTSKLQCEILRLFARIEYQLPNLIACAITKESLYNAFDNGITSDQIITFL 360

Query: 361 QQNAHPRVAERIPSVPENVTDQIRLWESDLNRVDITPAHFYDEFPSREVFEAACDYAREW 420
           QQN+HPR A+R+PS+PENVTDQIRLWE+DL R+++T AHFYDEFPS++VFEAACD+AREW
Sbjct: 361 QQNSHPRCADRVPSIPENVTDQIRLWETDLQRIEMTQAHFYDEFPSKDVFEAACDFAREW 420

Query: 421 NGLLWEDSKNLRLVVKADIHTHMREHLRRQ 451
            GLLWEDSK +RLVVK+++H  MRE L  Q
Sbjct: 421 RGLLWEDSKRMRLVVKSEVHNQMREFLHTQ 450

The following BLAST results are available for this feature:

BLAST of CsGy6G034080 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q680U9	2.1e-207	78.22	General transcription and DNA repair factor IIH subunit TFB2 OS=Arabidopsis thal...	[more]
Q92759	5.3e-70	34.22	General transcription factor IIH subunit 4 OS=Homo sapiens OX=9606 GN=GTF2H4 PE=...	[more]
P60027	5.3e-70	34.22	General transcription factor IIH subunit 4 OS=Pan troglodytes OX=9598 GN=GTF2H4 ...	[more]
O70422	1.2e-69	34.45	General transcription factor IIH subunit 4 OS=Mus musculus OX=10090 GN=Gtf2h4 PE...	[more]
Q6CLR2	8.8e-65	31.07	General transcription and DNA repair factor IIH subunit TFB2 OS=Kluyveromyces la...	[more]

BLAST of CsGy6G034080 vs. NCBI nr


Match Name	Identity	Description
XP_004134713.1	100.00	general transcription and DNA repair factor IIH subunit TFB2 isoform X1 [Cucumis...	[more]
XP_038882460.1	97.34	general transcription and DNA repair factor IIH subunit TFB2 isoform X1 [Beninca...	[more]
XP_022977542.1	96.90	RNA polymerase II transcription factor B subunit 2 [Cucurbita maxima]	[more]
XP_023543805.1	96.67	RNA polymerase II transcription factor B subunit 2 [Cucurbita pepo subsp. pepo]	[more]
KAG6604444.1	96.67	General transcription and DNA repair factor IIH subunit TFB2, partial [Cucurbita...	[more]

BLAST of CsGy6G034080 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0KK55	0.0	100.00	RNA polymerase II transcription factor B subunit 2 OS=Cucumis sativus OX=3659 GN...	[more]
A0A6J1IIT5	0.0	96.90	RNA polymerase II transcription factor B subunit 2 OS=Cucurbita maxima OX=3661 G...	[more]
A0A6J1EGA7	6.60e-315	96.23	RNA polymerase II transcription factor B subunit 2 OS=Cucurbita moschata OX=3662...	[more]
A0A6J1CK16	1.81e-308	88.59	RNA polymerase II transcription factor B subunit 2 OS=Momordica charantia OX=367...	[more]
A0A5A7UBE2	7.98e-302	93.89	RNA polymerase II transcription factor B subunit 2 OS=Cucumis melo var. makuwa O...	[more]

BLAST of CsGy6G034080 vs. TAIR 10


Match Name	E-value	Identity	Description
AT4G17020.2	1.5e-208	78.22	transcription factor-related	[more]
AT4G17020.1	1.5e-208	78.22	transcription factor-related	[more]
AT4G17020.3	1.5e-208	78.22	transcription factor-related	[more]

InterPro

Analysis Name: InterPro Annotations of Cucumber (Gy14) v2.1
Date Performed: 2021-10-25

Position :

Zoom :

x 1


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR040662	Transcription factor Tfb2, C-terminal domain	PFAM	PF18307	Tfb2_C	coord: 381..448 e-value: 1.6E-22 score: 79.7
None	No IPR available	GENE3D	3.30.70.2610		coord: 377..451 e-value: 1.2E-26 score: 94.8
IPR004598	Transcription factor TFIIH subunit p52/Tfb2	TIGRFAM	TIGR00625	TIGR00625	coord: 13..451 e-value: 2.7E-105 score: 350.9
IPR004598	Transcription factor TFIIH subunit p52/Tfb2	PFAM	PF03849	Tfb2	coord: 14..366 e-value: 4.3E-110 score: 368.0
IPR004598	Transcription factor TFIIH subunit p52/Tfb2	PANTHER	PTHR13152	TFIIH, POLYPEPTIDE 4	coord: 5..449

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CsGy6G034080.2	CsGy6G034080.2	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006289	nucleotide-excision repair
biological_process	GO:0070816	phosphorylation of RNA polymerase II C-terminal domain
cellular_component	GO:0016021	integral component of membrane
cellular_component	GO:0000439	transcription factor TFIIH core complex
cellular_component	GO:0005675	transcription factor TFIIH holo complex
molecular_function	GO:0001671	ATPase activator activity
molecular_function	GO:0003690	double-stranded DNA binding