CsGy6G034070 (gene) Cucumber (Gy14) v2.1

Overview


Name	CsGy6G034070
Type	gene
Organism	Cucumis sativus L. var. sativus cv. Gy14 (Cucumber (Gy14) v2.1)
Description	Unknown protein
Location	Gy14Chr6: 30485896 .. 30486635 (+)
RNA-Seq Expression	CsGy6G034070
Synteny	CsGy6G034070

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGAAGAGGAAGGTTCAATGTCGTCTTCTGGTCTTACATGGACTAGCCTCACGCTTCAAGCAGGCGCCAGATTCCCCTCAATACCCTCAAATCAAGGAACTATTTGGCCCTGATCCCCTGGCTTTTATTGAGGTAACTTGTCTCGCTTTATTACGCCTTACGTTTGAATTATGTGTTTAATGCCGCTTTTTCTGCCATTCTCTTTACTTTCTTTTTTGCTCTGTCCAATGATTTTTCATTGGATTTTGGTTTCCGATACTGAATTTATATATTTTGAGTGAATTTCTGTTGTATTTTATTGGTTCGGTATGAGTGTATTCCTTGTTCTGCCTTGGTTTGTGCATCTTTTGTTGGCTAATCGAACGTTTCTAGGTTTTGATTTCGATGCTATTGTTTCTCTTTTAGCAATCGGATCTTGCATTTATAGCGGTTTTGAGAGTCACTGCGCGTAAATGCACCATCTCATTTGTTTCGGTCATTTTGATTGTTTACTTCAATTATTACATCATACATTTTTCACATGCAATGGAAACCTTGTTCATCTTTTGTTCTGCCTGAAGAGTATAATTGTTGATGTAATACAAGAACTACAATCTTAGTGGTTTCCATCTCCACAAATACGTTTATCACTTCAGTTTAGTCCTCTTCAATCTTCATTGAGCCCTGGTTTCAGCTATGGAACGAGCATTATCAAGCATCTTGAAACTATTGTTATCCTACAGCAGTTTTTCTACAGTTGA

mRNA sequence

ATGAAGAGGAAGGTTCAATGTCGTCTTCTGGTCTTACATGGACTAGCCTCACGCTTCAAGCAGGCGCCAGATTCCCCTCAATACCCTCAAATCAAGGAACTATTTGGCCCTGATCCCCTGGCTTTTATTGAGCAATCGGATCTTGCATTTATAGCGGTTTTGAGAGTCACTGCGCGTAAATGCACCATCTCATTTGTTTCGTTTAGTCCTCTTCAATCTTCATTGAGCCCTGGTTTCAGCTATGGAACGAGCATTATCAAGCATCTTGAAACTATTGTTATCCTACAGCAGTTTTTCTACAGTTGA

Coding sequence (CDS)

ATGAAGAGGAAGGTTCAATGTCGTCTTCTGGTCTTACATGGACTAGCCTCACGCTTCAAGCAGGCGCCAGATTCCCCTCAATACCCTCAAATCAAGGAACTATTTGGCCCTGATCCCCTGGCTTTTATTGAGCAATCGGATCTTGCATTTATAGCGGTTTTGAGAGTCACTGCGCGTAAATGCACCATCTCATTTGTTTCGTTTAGTCCTCTTCAATCTTCATTGAGCCCTGGTTTCAGCTATGGAACGAGCATTATCAAGCATCTTGAAACTATTGTTATCCTACAGCAGTTTTTCTACAGTTGA

Protein sequence

MKRKVQCRLLVLHGLASRFKQAPDSPQYPQIKELFGPDPLAFIEQSDLAFIAVLRVTARKCTISFVSFSPLQSSLSPGFSYGTSIIKHLETIVILQQFFYS*

Homology

[Close]

BLAST of CsGy6G034070 vs. NCBI nr
Match: KGN49218.1 (hypothetical protein Csa_003958 [Cucumis sativus])

HSP 1 Score: 203 bits (517), Expect = 6.82e-66
Identity = 101/101 (100.00%), Postives = 101/101 (100.00%), Query Frame = 0


Query: 1   MKRKVQCRLLVLHGLASRFKQAPDSPQYPQIKELFGPDPLAFIEQSDLAFIAVLRVTARK 60
           MKRKVQCRLLVLHGLASRFKQAPDSPQYPQIKELFGPDPLAFIEQSDLAFIAVLRVTARK
Sbjct: 1   MKRKVQCRLLVLHGLASRFKQAPDSPQYPQIKELFGPDPLAFIEQSDLAFIAVLRVTARK 60

Query: 61  CTISFVSFSPLQSSLSPGFSYGTSIIKHLETIVILQQFFYS 101
           CTISFVSFSPLQSSLSPGFSYGTSIIKHLETIVILQQFFYS
Sbjct: 61  CTISFVSFSPLQSSLSPGFSYGTSIIKHLETIVILQQFFYS 101

[Close]

BLAST of CsGy6G034070 vs. NCBI nr
Match: CAD1844411.1 (unnamed protein product [Ananas comosus var. bracteatus])

HSP 1 Score: 48.1 bits (113), Expect = 7.41e-04
Identity = 24/45 (53.33%), Postives = 30/45 (66.67%), Query Frame = 0


Query: 13 HGLASRFKQAPDSPQYPQIKELFGPDPLAFIEQSDLAFIAVLRVT 57
          H LA    +A D  QYPQIKELFGPDPLAF++ S + F+ +   T
Sbjct: 28 HALA----KATDPSQYPQIKELFGPDPLAFLKISAVVFVQLWTAT 68

[Close]

BLAST of CsGy6G034070 vs. ExPASy TrEMBL
Match: A0A0A0KI22 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G517260 PE=4 SV=1)

HSP 1 Score: 203 bits (517), Expect = 3.30e-66
Identity = 101/101 (100.00%), Postives = 101/101 (100.00%), Query Frame = 0


Query: 1   MKRKVQCRLLVLHGLASRFKQAPDSPQYPQIKELFGPDPLAFIEQSDLAFIAVLRVTARK 60
           MKRKVQCRLLVLHGLASRFKQAPDSPQYPQIKELFGPDPLAFIEQSDLAFIAVLRVTARK
Sbjct: 1   MKRKVQCRLLVLHGLASRFKQAPDSPQYPQIKELFGPDPLAFIEQSDLAFIAVLRVTARK 60

Query: 61  CTISFVSFSPLQSSLSPGFSYGTSIIKHLETIVILQQFFYS 101
           CTISFVSFSPLQSSLSPGFSYGTSIIKHLETIVILQQFFYS
Sbjct: 61  CTISFVSFSPLQSSLSPGFSYGTSIIKHLETIVILQQFFYS 101

[Close]

BLAST of CsGy6G034070 vs. ExPASy TrEMBL
Match: A0A6V7QNE3 (Lipid_DES domain-containing protein OS=Ananas comosus var. bracteatus OX=296719 GN=CB5_LOCUS27622 PE=4 SV=1)

HSP 1 Score: 48.1 bits (113), Expect = 3.59e-04
Identity = 24/45 (53.33%), Postives = 30/45 (66.67%), Query Frame = 0


Query: 13 HGLASRFKQAPDSPQYPQIKELFGPDPLAFIEQSDLAFIAVLRVT 57
          H LA    +A D  QYPQIKELFGPDPLAF++ S + F+ +   T
Sbjct: 28 HALA----KATDPSQYPQIKELFGPDPLAFLKISAVVFVQLWTAT 68

[Close]

BLAST of CsGy6G034070 vs. ExPASy TrEMBL
Match: A0A5A7UG40 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold120G003080 PE=4 SV=1)

HSP 1 Score: 45.1 bits (105), Expect = 8.92e-04
Identity = 23/29 (79.31%), Postives = 23/29 (79.31%), Query Frame = 0


Query: 1  MKRKVQCRLLVLHGLASRFKQAPDSPQYP 29
          MKRKVQ  LLVLHG ASRFKQAPDS   P
Sbjct: 49 MKRKVQWCLLVLHGRASRFKQAPDSLSIP 77

The following BLAST results are available for this feature:

BLAST of CsGy6G034070 vs.


Match Name	E-value	Identity	Description

BLAST of CsGy6G034070 vs. NCBI nr


Match Name	E-value	Identity	Description
KGN49218.1	6.82e-66	100.00	hypothetical protein Csa_003958 [Cucumis sativus]	[more]
CAD1844411.1	7.41e-04	53.33	unnamed protein product [Ananas comosus var. bracteatus]	[more]

BLAST of CsGy6G034070 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0KI22	3.30e-66	100.00	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G517260 PE=4 SV=1	[more]
A0A6V7QNE3	3.59e-04	53.33	Lipid_DES domain-containing protein OS=Ananas comosus var. bracteatus OX=296719 ...	[more]
A0A5A7UG40	8.92e-04	79.31	Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold...	[more]

BLAST of CsGy6G034070 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CsGy6G034070.2	CsGy6G034070.2	mRNA